Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  39  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13888018--13888042
7
3.6
7
100
0
50
16
28
28
28
1.97
13896649--13896680
5
6.4
5
100
0
64
40
59
0
0
0.97
13907226--13907274
24
2.0
24
96
0
89
51
6
0
42
1.27
13918048--13918100
23
2.3
23
93
0
97
20
20
26
32
1.98
13925772--13925984
46
4.6
46
92
1
347
36
7
25
30
1.84
13927655--13927693
20
2.0
20
100
0
78
25
20
17
35
1.95
13928294--13928338
23
1.9
24
81
4
56
33
24
0
42
1.55
13928485--13928759
3
91.7
3
100
0
550
66
0
0
33
0.92
13930487--13930536
25
2.0
25
100
0
100
20
20
32
28
1.97
13931218--13931246
15
1.9
15
100
0
58
31
13
27
27
1.94
13935145--13935193
25
1.9
25
84
12
64
32
2
10
55
1.45
13938678--13938702
12
2.1
12
100
0
50
16
8
16
60
1.58
13943919--13943980
29
2.1
29
96
0
115
14
20
22
41
1.89
13943946--13944001
22
2.6
21
77
5
58
17
17
19
44
1.87
13947561--13947617
22
2.6
21
76
10
51
42
17
3
36
1.67
13949902--13949933
8
3.9
8
92
8
55
78
9
0
12
0.97
13949929--13950105
90
2.0
90
87
4
259
35
23
3
38
1.71
13949929--13950085
30
5.2
30
89
3
253
36
22
2
38
1.68
13950432--13950461
3
10.0
3
100
0
60
66
0
33
0
0.92
13950457--13950486
4
7.5
4
100
0
60
76
0
23
0
0.78
13950486--13950538
8
6.6
8
83
16
74
77
0
11
11
1.00
13950670--13950730
24
2.5
25
84
10
81
27
37
24
9
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13950818--13950860
7
5.9
7
78
10
50
83
0
16
0
0.64
13950816--13950860
23
2.0
23
90
0
72
84
0
15
0
0.62
13950829--13950860
16
2.0
16
100
0
64
87
0
12
0
0.54
13950993--13951019
5
5.4
5
100
0
54
37
0
0
62
0.95
13951460--13951763
18
16.6
18
73
12
210
30
14
10
44
1.78
13951460--13951710
37
6.8
37
74
11
183
31
14
10
44
1.79
13951460--13951779
55
5.8
55
78
7
310
30
14
10
44
1.78
13951473--13951779
17
16.6
19
71
13
153
30
14
10
43
1.80
13957719--13957760
9
4.8
9
82
5
59
88
11
0
0
0.53
13957719--13957760
13
3.2
13
83
12
59
88
11
0
0
0.53
13957719--13957760
12
3.5
12
84
9
59
88
11
0
0
0.53
13957719--13957750
14
2.3
14
88
0
55
90
9
0
0
0.45
13958625--13959085
77
6.0
77
84
6
565
26
17
19
36
1.94
13958625--13959085
155
3.0
154
86
5
594
26
17
19
36
1.94
13958625--13959085
232
2.0
232
97
0
868
26
17
19
36
1.94
13959424--13960432
77
13.0
77
88
3
1241
26
17
21
35
1.95
13960594--13960771
60
2.9
59
90
4
250
35
24
2
37
1.70
13960594--13960771
90
2.0
91
86
1
250
35
24
2
37
1.70
13960594--13960751
30
5.2
30
89
0
253
37
23
1
37
1.66
13961094--13961133
3
13.0
3
89
5
62
67
0
32
0
0.91
13961095--13961150
9
6.1
9
84
10
60
75
0
25
0
0.81
13961087--13961146
19
3.2
19
87
0
84
68
0
31
0
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13961094--13961153
16
3.8
16
82
10
70
73
0
26
0
0.84
13961098--13961163
6
10.3
6
80
9
51
77
0
22
0
0.77
13961420--13961468
21
2.3
22
89
3
73
83
0
16
0
0.64
13961421--13961468
7
6.9
7
81
9
62
83
0
16
0
0.65
13962036--13962077
20
2.0
22
86
9
61
42
16
2
38
1.61
13962069--13962274
18
11.6
17
72
11
137
33
12
11
43
1.78
13962068--13962274
54
3.8
53
82
6
213
32
12
11
43
1.78
13962068--13962273
17
11.5
17
72
10
126
32
12
11
43
1.78
13962119--13962321
109
1.9
106
82
11
250
30
14
10
44
1.79
13965374--13965763
18
21.7
18
70
16
222
46
10
12
30
1.75
13965376--13965681
53
5.8
51
71
17
184
47
10
11
30
1.74
13965397--13965652
35
7.3
35
71
11
168
48
10
11
29
1.73
13965397--13965652
88
2.9
88
79
10
240
48
10
11
29
1.73
13965398--13965763
17
20.4
18
68
19
155
46
10
12
30
1.75
13965723--13965761
20
1.9
21
94
5
71
41
10
15
33
1.81
13965855--13965899
8
6.0
8
77
15
51
71
4
0
24
1.05
13966037--13966097
18
3.3
18
86
11
88
0
18
0
81
0.68
13966031--13966098
29
2.5
27
82
15
86
0
16
0
83
0.64
13966033--13966101
30
2.3
29
92
2
111
0
17
0
82
0.67
13966382--13966415
3
11.3
3
93
0
59
0
29
0
70
0.87
13966475--13966531
16
3.4
16
83
9
62
1
33
0
64
1.04
13966771--13966903
30
4.5
29
79
7
142
41
6
18
33
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13967102--13967699
78
7.6
78
79
9
578
34
19
16
29
1.94
13967613--13967787
98
1.8
96
85
6
246
41
16
16
26
1.89
13967613--13967795
96
1.9
97
83
6
237
43
15
15
25
1.87
13979663--13979998
18
19.3
16
69
13
161
45
10
11
32
1.74
13979697--13980049
18
20.1
18
72
11
225
47
10
11
30
1.74
13979911--13979967
17
3.5
15
76
9
51
52
8
5
33
1.55
13979662--13980049
35
11.1
35
72
9
234
46
10
11
31
1.73
13984960--13985010
21
2.4
21
90
0
75
35
17
45
1
1.60
13985391--13985557
43
3.9
44
75
6
153
34
17
19
28
1.95
13985374--13985601
42
5.3
43
73
3
154
31
17
20
30
1.96
13985375--13985596
87
2.6
88
79
4
222
31
18
21
28
1.96
13987683--13987739
25
2.2
26
90
3
89
61
8
5
24
1.46
13991086--13991832
373
2.0
373
96
0
1379
26
27
20
24
1.99
13994910--13994969
16
3.9
16
78
16
56
63
16
0
20
1.31
13995186--13995244
27
2.2
27
84
0
73
15
20
38
25
1.91
13995948--13995994
22
2.1
22
84
0
58
44
0
6
48
1.28
13997137--13997180
22
2.0
21
83
12
54
45
11
15
27
1.81
13997418--13997554
42
3.3
42
90
2
204
48
18
21
11
1.79
14033663--14033751
3
30.0
3
69
10
58
61
2
5
30
1.31
14033668--14033731
23
3.0
21
69
20
53
62
3
4
29
1.31
14034358--14034410
27
2.0
27
81
7
63
73
7
16
1
1.15
14034398--14034472
39
1.9
39
100
0
150
50
16
4
29
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14035068--14035394
132
2.5
132
93
2
550
25
27
18
28
1.98
14035464--14036118
89
7.4
89
87
0
873
22
25
24
27
2.00
14040652--14040686
18
1.9
18
88
0
52
28
5
5
60
1.43
14054937--14055033
48
2.0
49
97
2
187
40
14
10
35
1.80
14061085--14061189
6
18.0
6
83
13
123
81
1
16
0
0.77
14061088--14061179
7
13.4
7
81
11
93
82
2
15
0
0.76
14061922--14061962
16
2.7
15
85
7
64
43
21
2
31
1.66
14062196--14062236
16
2.7
15
85
7
64
43
21
2
31
1.66
14061852--14062400
274
2.0
275
99
0
1091
36
18
16
28
1.93
14062510--14063168
100
6.6
100
91
0
978
32
22
20
24
1.98
14062507--14063165
50
13.2
50
73
1
496
32
22
20
24
1.98
14063281--14063398
47
2.6
46
80
9
136
23
22
26
27
1.99
14065162--14065198
19
1.9
19
88
0
56
24
0
10
64
1.25
14069793--14069819
2
13.5
2
100
0
54
51
0
0
48
1.00
14076330--14076954
312
2.0
313
99
0
1243
39
11
7
41
1.69
14078587--14078653
31
2.2
30
81
5
80
35
10
11
41
1.76
14086865--14087159
147
2.0
147
99
0
581
37
13
6
41
1.71
14092070--14092109
2
20.0
2
100
0
80
50
0
0
50
1.00
14105207--14105277
34
2.1
34
100
0
142
38
15
12
33
1.85
14111275--14111328
2
27.0
2
100
0
108
0
0
50
50
1.00
14115370--14115403
14
2.4
15
85
14
54
44
5
14
35
1.70
14123233--14123275
20
2.3
18
80
8
50
62
4
0
32
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14126211--14126248
14
2.7
14
80
15
51
42
5
0
52
1.24
14130792--14130831
6
6.8
6
91
2
55
20
7
0
72
1.08
14132806--14132833
10
2.8
10
100
0
56
78
0
21
0
0.75
14136678--14136737
29
2.1
28
81
9
68
41
0
5
53
1.23
14156606--14156678
37
2.0
37
88
0
110
49
6
2
41
1.44
14156620--14156680
17
3.4
18
71
11
54
47
4
3
44
1.41
14159705--14159808
52
2.0
52
100
0
208
26
15
19
38
1.91
14166665--14166698
16
2.1
16
94
0
59
11
26
20
41
1.87
14168229--14168266
20
1.9
20
88
0
58
50
5
0
44
1.24
14170576--14170608
16
1.9
18
88
11
52
54
0
0
45
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210