genome.fa.s3.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  156  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52189716--52189988	133	2.1	133	92	1	458	29	17	24	28	1.97
52189425--52189954	89	6.1	87	71	9	355	30	18	23	27	1.98
52191594--52191623	4	7.2	4	96	3	51	23	0	0	76	0.78
52196964--52197020	27	2.1	27	100	0	114	42	24	19	14	1.88
52198953--52198977	13	1.9	13	100	0	50	48	16	12	24	1.79
52208033--52208265	110	2.1	110	96	3	434	32	7	5	54	1.50
52213876--52213920	21	2.1	21	95	0	81	15	24	15	44	1.85
52218492--52218690	56	3.7	56	78	8	248	27	19	26	26	1.99
52218548--52218787	50	4.7	50	78	7	250	28	21	25	24	1.99
52218492--52218724	106	2.2	106	100	0	466	28	20	25	25	1.99
52218990--52219039	20	2.5	20	81	15	68	56	4	24	16	1.57
52220959--52221169	54	3.9	54	83	1	255	22	22	30	24	1.99
52221852--52221895	20	2.2	20	100	0	88	50	0	18	31	1.47
52223629--52223679	22	2.4	21	81	12	59	17	9	3	68	1.33
52240325--52240362	5	7.8	5	94	5	69	36	0	21	42	1.53
52241784--52241855	26	2.8	25	82	12	92	19	20	22	37	1.94
52241923--52242034	25	4.6	25	66	11	79	17	28	20	33	1.96
52247478--52247545	26	2.7	24	76	13	66	16	25	23	35	1.95
52247478--52247654	25	7.2	25	70	15	102	18	26	21	33	1.96
52247627--52247729	25	4.2	24	69	10	66	18	31	20	30	1.96
52253015--52253046	16	2.0	16	93	0	55	9	31	25	34	1.87
52255593--52255691	23	4.3	23	82	5	128	31	25	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52257063--52257110	12	4.0	12	77	0	51	27	6	4	62	1.38
52257206--52257257	26	2.0	26	85	11	70	11	3	5	78	1.05
52261365--52261415	13	3.9	13	77	10	59	15	3	5	74	1.16
52266488--52266647	80	2.0	80	100	0	320	37	17	17	27	1.92
52270174--52270309	68	2.0	68	100	0	272	41	16	20	22	1.90
52272652--52273031	189	2.0	189	100	0	760	35	9	12	43	1.74
52286028--52286057	12	2.4	13	94	5	53	66	6	6	20	1.38
52287946--52288054	29	3.8	29	87	4	143	22	7	12	57	1.59
52287947--52288058	58	1.9	58	89	10	176	22	8	12	57	1.61
52288421--52288454	3	11.3	3	100	0	68	32	0	35	32	1.58
52288453--52288487	3	11.7	3	100	0	70	65	0	34	0	0.93
52288538--52288643	41	2.7	39	77	13	117	34	24	21	18	1.96
52288723--52288931	41	5.2	42	73	16	140	19	25	24	30	1.98
52288702--52288931	77	2.9	78	80	11	231	20	25	24	30	1.99
52288861--52288995	41	3.3	41	77	6	130	25	24	25	24	2.00
52293040--52293073	15	2.4	14	90	5	50	17	14	2	64	1.40
52306636--52306769	66	2.0	66	81	5	155	39	14	29	17	1.88
52306740--52306787	21	2.3	21	85	0	60	33	16	43	6	1.73
52306960--52306991	10	3.3	10	95	4	57	31	0	6	62	1.20
52307113--52307367	43	5.9	43	77	8	191	23	19	29	27	1.98
52307113--52307367	86	3.0	85	76	10	241	23	19	29	27	1.98
52307314--52307408	43	2.2	43	88	3	138	18	24	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52307469--52307510	22	1.9	22	90	0	66	40	26	21	11	1.88
52307528--52307581	3	18.0	3	100	0	108	66	0	33	0	0.92
52307588--52307625	19	2.0	19	94	0	67	39	10	18	31	1.85
52308381--52308431	20	2.6	19	87	9	75	43	15	13	27	1.85
52309362--52309408	24	1.9	25	83	12	62	6	36	0	57	1.24
52312879--52312918	15	2.5	17	76	19	50	65	2	5	27	1.27
52327054--52327112	6	9.7	6	94	3	73	59	0	22	18	1.38
52327054--52327113	18	3.3	18	88	2	84	58	0	23	18	1.39
52334598--52334633	6	5.8	6	96	3	63	52	0	30	16	1.44
52340034--52340063	2	15.0	2	100	0	60	50	0	50	0	1.00
52340701--52340782	41	2.0	41	92	0	137	23	14	28	34	1.94
52350848--52350887	18	2.2	18	95	0	71	40	35	2	22	1.68
52355861--52355903	20	2.2	20	91	0	68	39	11	27	20	1.88
52358838--52358975	39	3.5	39	93	2	215	44	21	3	29	1.69
52395298--52395353	16	3.4	16	76	18	53	23	17	0	58	1.38
52395285--52395368	43	2.0	43	90	4	134	25	20	0	54	1.44
52404399--52404578	50	3.6	50	80	4	166	25	16	26	31	1.97
52407263--52407335	30	2.4	30	86	0	101	24	23	12	39	1.89
52407323--52407399	30	2.6	30	78	15	104	19	23	9	48	1.77
52407378--52407490	30	3.8	30	75	8	106	29	26	9	34	1.88
52407260--52407477	120	1.8	120	82	2	285	24	25	11	38	1.88
52414212--52414317	41	2.5	43	84	7	146	20	19	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52418769--52418827	27	2.2	27	82	11	68	54	11	8	25	1.65
52420537--52420604	21	3.1	21	74	16	57	30	2	4	61	1.30
52421660--52421716	24	2.4	24	82	2	62	36	1	3	57	1.26
52423308--52423770	231	2.0	231	100	0	926	25	21	22	30	1.99
52425613--52425691	36	2.4	33	82	16	92	45	0	12	41	1.42
52427546--52428525	219	4.5	219	92	0	1532	26	25	20	27	1.99
52428853--52428908	24	2.3	24	81	6	69	32	21	12	33	1.91
52429852--52429894	22	2.0	22	95	0	77	2	11	0	86	0.67
52429851--52429894	11	4.0	11	78	0	52	2	13	0	84	0.73
52429852--52429895	17	2.6	17	88	0	70	2	11	0	86	0.66
52432139--52432172	12	2.8	12	81	0	50	8	23	23	44	1.81
52434093--52434926	415	2.0	415	100	0	1668	35	16	13	34	1.88
52435284--52435338	9	6.2	9	74	17	53	76	0	1	21	0.88
52435264--52435339	18	4.2	18	75	14	59	73	2	2	21	1.07
52435769--52435810	19	2.2	20	86	4	59	4	52	38	4	1.44
52440454--52440491	19	2.0	19	85	10	51	13	18	44	23	1.85
52440725--52440924	27	7.4	27	82	1	240	43	20	18	18	1.89
52446720--52446769	19	2.6	19	87	0	73	28	40	4	28	1.74
52446710--52446771	28	2.2	28	85	5	81	25	40	3	30	1.72
52446710--52446776	9	7.2	9	77	11	64	23	40	2	32	1.70
52459283--52459720	218	2.0	219	99	0	869	45	10	7	36	1.68
52460826--52460856	6	5.2	6	100	0	62	0	0	16	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52460953--52461056	15	6.6	15	69	22	61	21	1	20	56	1.51
52460950--52461029	9	8.8	9	70	26	62	22	1	18	57	1.48
52460950--52461029	21	3.5	22	83	13	83	22	1	18	57	1.48
52460950--52461056	28	4.0	28	81	15	111	21	1	20	56	1.52
52460975--52461102	33	4.1	31	77	12	120	22	3	21	52	1.63
52461050--52461204	79	2.0	79	84	5	206	25	8	18	47	1.76
52461215--52461261	9	5.4	9	82	10	62	25	0	19	55	1.43
52461214--52461265	25	2.1	25	96	0	95	28	0	17	53	1.44
52461222--52461277	25	2.2	25	93	0	94	26	0	19	53	1.45
52466742--52466801	30	2.0	31	86	3	86	20	40	0	40	1.52
52470220--52470274	25	2.2	25	90	0	83	29	20	29	21	1.98
52471786--52471849	30	2.1	31	88	2	94	40	40	1	17	1.59
52471795--52471819	13	1.9	13	100	0	50	40	48	4	8	1.51
52471812--52471845	17	1.9	18	88	5	52	41	41	0	17	1.50
52471834--52471907	38	1.9	39	94	2	132	52	25	2	18	1.59
52472039--52472113	37	2.0	37	89	0	114	38	4	13	44	1.62
52475927--52476079	44	3.4	44	80	4	155	22	17	14	45	1.85
52478587--52478643	21	2.7	21	76	10	71	36	14	15	33	1.88
52479245--52479314	24	2.9	24	75	12	63	28	2	0	68	1.04
52491250--52491275	12	2.2	12	100	0	52	69	0	15	15	1.20
52492541--52492569	13	2.1	14	93	6	51	37	0	0	62	0.96
52495749--52495801	19	2.9	18	78	16	65	30	9	0	60	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52495860--52495931	21	3.5	20	68	22	58	34	4	2	58	1.32
52496341--52496368	6	4.7	6	100	0	56	64	0	0	35	0.94
52508704--52508730	7	3.9	7	100	0	54	55	0	0	44	0.99
52508997--52509035	20	2.0	20	100	0	78	43	5	15	35	1.69
52512917--52513091	49	3.5	50	77	8	144	30	20	25	24	1.99
52513279--52513336	20	3.3	17	77	15	55	55	5	24	15	1.61
52526220--52526291	34	2.1	34	92	0	117	22	29	16	31	1.96
52533723--52533757	18	1.9	18	88	0	52	25	37	2	34	1.71
52534616--52534648	16	2.0	17	94	5	59	24	6	18	51	1.68
52534617--52534652	17	2.2	16	90	5	54	25	8	19	47	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210