genome.fa.s3.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  43  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15215589--15215625	17	2.2	17	95	0	65	35	40	8	16	1.78
15222401--15222498	25	3.9	25	75	9	92	23	23	22	30	1.99
15236506--15236559	25	2.2	25	86	6	74	57	0	3	38	1.17
15237215--15237276	30	2.1	30	81	6	72	50	12	6	30	1.66
15238971--15239165	27	7.3	27	81	3	214	21	15	18	44	1.86
15238970--15239165	54	3.6	54	84	2	252	21	15	18	44	1.86
15238971--15239164	107	1.8	107	86	2	282	21	15	19	44	1.87
15249572--15249780	86	2.5	85	81	3	242	28	16	24	30	1.96
15249572--15249780	43	4.9	43	80	5	212	28	16	24	30	1.96
15251323--15251427	20	5.2	20	72	13	88	14	18	25	41	1.88
15251336--15251411	21	3.7	20	74	11	73	15	15	25	43	1.86
15251323--15251427	41	2.6	41	85	0	147	14	18	25	41	1.88
15251882--15251958	28	2.7	28	83	2	100	41	12	19	25	1.87
15256747--15256840	41	2.3	41	88	0	143	29	17	27	25	1.97
15262463--15262651	41	4.6	41	84	0	243	28	18	21	31	1.97
15262463--15262655	82	2.3	82	86	0	278	27	19	22	31	1.98
15262753--15262803	26	2.0	26	88	0	75	60	5	9	23	1.50
15263162--15263200	21	1.9	20	94	5	69	28	0	15	56	1.40
15263345--15263538	14	14.0	13	68	13	77	20	2	35	42	1.64
15263366--15263551	21	8.9	20	72	10	88	20	1	35	42	1.62
15263407--15263559	7	21.9	7	72	7	96	18	1	35	44	1.59
15264122--15264152	1	31.0	1	93	0	53	3	96	0	0	0.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15266764--15267161	43	9.3	43	90	0	607	22	18	34	25	1.96
15267975--15268023	17	2.9	17	84	0	71	26	20	20	32	1.97
15271165--15271211	19	2.5	19	85	0	58	59	14	0	25	1.36
15272089--15272133	23	2.0	23	95	0	81	15	22	20	42	1.89
15274082--15274120	18	2.2	18	95	0	69	25	5	20	48	1.70
15274121--15274228	9	12.2	9	70	14	73	30	3	17	48	1.65
15274120--15274231	25	5.0	23	72	22	80	30	3	16	49	1.63
15274164--15274222	20	2.6	23	84	15	79	28	1	20	49	1.59
15274315--15275358	522	2.0	522	99	0	2070	44	10	8	36	1.69
15276449--15276489	13	3.2	13	83	13	57	51	9	4	34	1.56
15277599--15277628	15	2.0	15	100	0	60	26	20	20	33	1.97
15277620--15278188	270	2.1	270	80	4	612	32	18	16	32	1.93
15278249--15278290	19	2.2	19	86	0	57	11	2	9	76	1.12
15278372--15278561	93	2.1	92	93	1	335	38	5	5	50	1.49
15278413--15278569	46	3.4	46	67	15	133	39	4	6	49	1.48
15279966--15280080	41	2.8	40	80	6	113	37	26	16	19	1.93
15279890--15280080	83	2.3	82	77	13	196	38	26	16	18	1.92
15279964--15280081	42	2.8	42	81	6	134	37	26	16	19	1.93
15283322--15283370	19	2.6	19	84	9	57	63	2	2	32	1.17
15287506--15287536	16	1.9	16	93	0	53	9	9	9	70	1.33
15291353--15291472	25	4.8	25	84	0	159	35	17	25	21	1.95
15291353--15291472	50	2.4	50	97	0	222	35	17	25	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15305053--15305086	17	2.0	17	100	0	68	35	11	11	41	1.78
15305773--15305838	4	16.5	4	100	0	132	50	24	0	25	1.50
15312429--15312474	21	2.2	20	81	11	56	39	8	34	17	1.80
15314540--15314565	13	2.0	13	100	0	52	76	0	23	0	0.78
15317473--15317524	9	5.6	9	78	17	61	26	7	19	46	1.77
15317473--15317526	20	2.8	19	91	5	83	25	7	18	48	1.74
15321406--15321478	33	2.2	34	85	7	96	39	1	26	32	1.65
15324433--15324472	20	2.0	20	100	0	80	40	25	30	5	1.77
15328302--15328474	85	2.0	86	86	5	244	26	21	8	43	1.80
15333209--15333266	27	2.1	27	83	0	71	34	29	22	13	1.93
15337070--15337108	19	2.1	19	100	0	78	61	12	15	10	1.56
15339268--15339300	13	2.7	13	90	9	52	36	12	15	36	1.84
15340286--15340594	102	3.0	102	82	2	336	30	15	25	29	1.96
15340454--15340586	50	2.7	50	92	0	212	30	17	23	29	1.97
15340306--15340588	51	5.6	50	78	4	228	29	15	25	29	1.96
15342754--15342811	25	2.3	25	90	0	89	17	6	37	37	1.76
15347652--15347676	13	1.9	13	100	0	50	60	0	0	40	0.97
15363208--15363351	79	1.8	77	88	2	216	31	14	6	47	1.69
15363613--15363645	14	2.3	15	89	5	50	27	0	9	63	1.24
15364068--15364097	12	2.5	12	94	0	51	30	13	43	13	1.82
15367757--15367926	72	2.3	73	86	7	238	57	12	5	24	1.56
15369107--15369962	45	19.0	45	100	0	1712	55	8	6	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15370101--15370132	15	2.2	14	94	5	55	53	12	28	6	1.62
15372545--15372708	72	2.3	72	85	4	224	25	5	12	56	1.58
15374274--15374328	26	2.1	26	89	0	83	38	18	9	34	1.82
15374274--15374328	13	4.2	13	76	0	56	38	18	9	34	1.82
15375119--15375175	26	2.2	26	87	6	80	45	0	3	50	1.18
15375574--15375613	21	2.0	21	90	5	64	42	0	15	42	1.46
15386904--15386944	19	2.2	18	91	4	64	82	0	14	2	0.76
15386911--15386945	17	2.0	17	88	5	52	82	0	17	0	0.66
15387824--15387865	7	6.0	7	83	10	59	69	0	16	14	1.20
15387817--15387873	15	3.9	15	82	13	75	68	0	15	15	1.22
15387826--15387873	21	2.3	21	88	0	69	70	0	14	14	1.16
15388952--15389294	128	2.6	128	88	4	501	30	20	23	25	1.98
15389303--15389402	44	2.3	44	77	6	105	34	19	18	29	1.95
15389305--15390100	175	4.5	175	90	0	1252	31	18	20	29	1.96
15389353--15390117	44	17.5	42	65	14	162	31	18	20	29	1.96
15390166--15390643	50	9.6	50	69	2	173	32	24	21	22	1.98
15390137--15390683	100	5.5	100	87	1	711	31	24	21	22	1.98
15392275--15392309	16	2.2	16	94	0	61	34	0	0	65	0.93
15403395--15403488	25	3.7	25	76	11	93	53	9	6	30	1.59
15403423--15403505	25	3.4	23	77	11	67	49	8	9	32	1.66
15405101--15406352	44	28.3	44	76	5	966	32	23	12	30	1.93
15405101--15406193	133	8.2	133	91	2	1317	32	24	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15405101--15406350	266	4.7	266	85	2	1394	32	24	12	30	1.92
15407632--15407678	14	3.3	15	79	11	53	12	14	0	72	1.13
15407632--15407678	15	3.3	14	76	11	51	12	14	0	72	1.13
15407630--15407687	28	2.1	27	84	9	73	15	17	0	67	1.24
15410569--15410614	19	2.4	19	85	7	58	47	8	19	23	1.77
15412349--15412438	23	3.8	24	76	8	85	54	10	5	30	1.56
15414561--15414631	26	2.7	27	73	14	69	45	0	2	52	1.15
15415222--15415311	23	3.8	24	76	8	85	54	10	5	30	1.56
15416624--15416688	26	2.5	27	73	14	66	44	0	3	52	1.16
15416695--15417054	102	3.5	102	95	1	616	40	11	10	37	1.76
15417159--15417196	16	2.4	16	100	0	76	23	28	5	42	1.76
15423231--15423265	16	2.2	16	89	0	52	0	34	0	65	0.93
15423277--15423351	28	2.7	26	74	18	62	57	2	0	40	1.13
15424917--15425024	33	3.3	33	80	5	146	25	22	18	34	1.96
15424916--15425059	66	2.2	66	91	2	236	25	22	18	33	1.97
15424935--15425057	33	3.7	33	80	4	140	26	22	17	32	1.97
15426733--15427120	79	4.9	80	85	6	497	56	9	7	26	1.59
15426733--15427120	159	2.4	159	86	5	523	56	9	7	26	1.59
15427315--15427457	33	4.3	33	74	9	130	27	14	42	14	1.85
15427305--15427457	66	2.3	66	79	2	155	27	14	43	14	1.84
15429476--15429512	16	2.3	17	81	13	51	62	8	0	29	1.24
15429474--15429512	15	2.5	15	87	4	51	61	7	0	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15429496--15429868	106	3.5	105	86	6	488	56	13	0	30	1.42
15429597--15429922	106	3.1	105	84	4	286	55	14	0	29	1.45
15431267--15431321	22	2.4	23	80	17	62	47	3	5	43	1.44
15434879--15434934	18	3.1	18	84	0	76	8	8	46	35	1.67
15440166--15440190	11	2.3	11	100	0	50	16	0	0	84	0.63
15441122--15441158	2	19.5	2	83	10	51	48	2	0	48	1.15
15453891--15453932	18	2.4	18	88	4	59	66	2	9	21	1.32
15468331--15468377	6	8.0	6	85	4	69	78	2	0	19	0.85
15468333--15468384	5	9.6	5	82	17	52	80	1	0	17	0.80
15469610--15469654	24	1.9	24	86	4	65	57	2	11	28	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210