genome.fa.s3.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  115  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38703492--38703599	53	2.0	53	96	0	198	31	13	11	43	1.80
38703879--38703908	15	2.0	15	100	0	60	26	20	33	20	1.97
38706404--38706433	15	2.0	15	93	0	51	10	6	10	73	1.25
38707761--38707882	23	5.3	23	87	3	174	29	27	22	20	1.99
38707761--38707882	46	2.7	46	92	0	199	29	27	22	20	1.99
38710122--38710170	13	3.8	13	88	0	62	44	0	14	40	1.45
38710493--38710662	71	2.4	69	88	3	243	42	2	4	50	1.38
38714345--38714395	23	2.2	23	89	0	75	29	9	19	41	1.84
38731027--38731387	180	2.0	181	95	2	656	31	6	30	32	1.83
38731786--38731830	16	3.1	15	84	12	58	35	0	8	55	1.31
38734817--38734863	22	2.1	22	88	0	67	46	8	6	38	1.60
38752161--38752203	23	1.9	22	90	4	68	30	4	6	58	1.45
38753697--38753972	137	2.0	138	99	0	545	46	13	6	34	1.67
38760759--38760789	3	10.3	3	92	0	53	67	3	0	29	1.06
38763766--38763808	20	2.2	19	83	4	50	65	2	0	32	1.06
38769013--38769162	53	2.9	52	81	6	162	34	18	24	22	1.96
38768981--38769347	194	1.9	195	80	4	427	34	17	20	27	1.95
38769239--38769477	53	4.4	52	78	11	180	36	19	22	21	1.95
38769301--38769477	53	3.2	53	82	9	196	38	19	22	19	1.93
38770556--38770598	17	2.4	19	81	14	56	67	0	4	27	1.10
38772661--38772723	33	1.9	33	83	0	81	15	14	46	23	1.83
38773763--38773841	5	14.6	5	77	12	50	20	20	0	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38773757--38773808	16	3.2	16	83	0	59	17	11	0	71	1.15
38773762--38773812	21	2.4	22	83	6	68	19	13	0	66	1.24
38775545--38776587	55	18.8	55	77	8	786	21	22	19	36	1.95
38775545--38776446	390	2.3	386	84	5	1121	22	21	19	36	1.95
38775545--38776584	110	9.4	108	77	8	884	22	22	19	36	1.95
38776602--38776725	52	2.4	52	80	10	128	22	20	17	38	1.93
38778358--38778385	5	5.6	5	100	0	56	60	39	0	0	0.97
38781463--38781530	34	2.0	35	85	8	95	58	2	0	38	1.13
38781614--38781697	43	2.0	43	85	4	116	47	10	4	36	1.59
38786586--38786733	79	1.9	81	85	2	210	39	32	2	25	1.67
38786604--38786771	79	2.1	79	82	6	198	42	30	1	25	1.65
38786910--38787023	41	2.8	41	89	0	165	30	25	21	22	1.99
38793063--38793153	25	3.7	24	75	11	76	29	21	21	26	1.99
38794368--38794452	20	4.2	20	67	21	61	48	3	4	43	1.41
38796960--38797005	20	2.3	21	85	10	62	63	2	6	28	1.31
38802204--38802275	18	3.8	18	71	15	65	36	1	0	62	1.04
38802221--38802287	11	6.4	11	75	18	54	35	2	0	61	1.12
38802211--38802296	40	2.2	39	93	2	154	34	2	0	62	1.08
38802270--38802309	21	1.9	21	89	0	62	37	2	0	60	1.11
38802269--38802323	21	2.5	20	80	13	56	38	1	3	56	1.28
38803892--38804316	38	11.2	38	82	1	433	15	18	30	35	1.92
38803892--38804316	114	3.7	114	81	1	487	15	18	30	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38810335--38810379	23	2.0	23	95	0	81	46	22	8	22	1.79
38817661--38817686	5	5.2	5	100	0	52	38	19	19	23	1.93
38817635--38817686	26	2.0	26	81	7	61	34	15	26	23	1.94
38818463--38818493	9	3.4	9	90	0	53	38	22	12	25	1.90
38819386--38819415	15	2.0	15	100	0	60	53	0	6	40	1.27
38819995--38820054	25	2.4	25	83	5	77	26	16	28	28	1.97
38821399--38821710	38	8.3	38	85	3	389	16	19	29	33	1.95
38822379--38822437	17	3.5	17	85	0	73	25	18	38	16	1.92
38826196--38826271	23	3.3	23	90	3	118	30	25	19	25	1.98
38826409--38826447	18	2.2	17	86	13	53	46	20	0	33	1.51
38826522--38826560	20	2.0	20	84	0	51	17	35	5	41	1.72
38828513--38828561	20	2.7	18	77	22	57	48	4	2	44	1.33
38829033--38829084	19	2.7	18	82	11	59	34	3	3	57	1.35
38835703--38835732	15	2.0	15	93	0	51	13	43	20	23	1.86
38836174--38836202	2	14.5	2	100	0	58	48	0	0	51	1.00
38837437--38837527	40	2.3	38	78	14	94	50	2	6	40	1.41
38844158--38844227	22	3.4	23	66	30	68	25	21	11	41	1.86
38844154--38844238	38	2.2	38	97	0	161	24	20	9	45	1.80
38846178--38846241	33	1.9	33	87	6	94	51	12	14	21	1.75
38847489--38847525	9	4.1	9	92	0	65	29	10	13	45	1.77
38856170--38856218	25	2.0	25	84	8	64	55	4	10	30	1.52
38856212--38856250	11	3.5	11	86	10	53	53	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38856198--38856250	17	2.9	19	78	18	60	49	0	7	43	1.31
38864840--38864908	35	2.0	35	94	0	120	36	14	8	40	1.77
38867399--38867461	33	1.9	33	90	3	101	58	11	9	20	1.60
38867581--38867627	9	5.2	9	85	7	60	0	14	0	85	0.61
38867588--38867627	16	2.4	17	84	15	57	0	12	0	87	0.54
38867954--38868025	12	6.2	12	77	19	73	0	25	0	75	0.81
38867957--38868030	17	4.6	17	73	20	70	0	27	0	72	0.84
38868275--38868330	16	3.4	16	77	18	53	1	35	0	62	1.06
38868583--38868630	13	3.5	13	73	15	51	47	8	12	31	1.71
38868571--38868647	29	2.7	29	85	0	109	44	7	19	28	1.78
38870385--38870424	21	1.9	21	94	0	71	42	0	0	57	0.98
38870451--38870582	60	2.2	60	94	0	228	31	30	7	30	1.85
38871639--38871670	3	10.7	3	100	0	64	31	0	0	68	0.90
38874760--38874800	2	20.5	2	89	0	64	48	2	0	48	1.14
38875727--38875752	2	13.0	2	100	0	52	50	0	0	50	1.00
38876925--38877305	181	2.1	180	81	4	437	29	10	20	39	1.86
38876925--38877350	181	2.4	181	80	4	405	29	10	20	39	1.86
38879020--38879072	4	13.2	4	100	0	106	24	0	26	49	1.51
38882279--38882310	15	2.3	15	89	10	50	75	0	18	6	1.01
38882867--38882918	26	2.1	24	82	7	59	26	3	7	61	1.41
38883421--38883475	26	2.2	26	80	3	67	12	20	14	52	1.73
38884859--38884919	31	2.0	31	87	6	88	40	11	11	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38885810--38885843	16	2.1	16	94	0	59	26	2	5	64	1.30
38885857--38885893	19	2.0	19	89	5	58	40	0	2	56	1.13
38885846--38885911	18	3.4	18	78	18	62	42	0	1	56	1.08
38885905--38885942	13	3.1	12	82	17	51	31	0	10	57	1.32
38885907--38885942	12	2.8	13	87	8	56	27	0	11	61	1.30
38888395--38888783	205	1.9	205	88	3	595	32	16	11	39	1.84
38896229--38896275	13	3.8	12	76	18	51	36	0	2	61	1.08
38896223--38896275	25	2.1	25	92	0	88	35	0	1	62	1.06
38897524--38897697	20	8.7	20	65	11	70	17	31	17	34	1.93
38897508--38897771	40	6.6	40	85	2	325	17	28	18	35	1.93
38897644--38897709	20	3.3	20	72	16	64	16	30	15	37	1.90
38899662--38899804	45	3.0	45	78	11	169	29	22	16	32	1.95
38909978--38910028	26	1.9	26	88	11	77	56	11	9	21	1.63
38910122--38910153	15	2.0	17	88	11	50	62	9	0	28	1.26
38910312--38910351	19	2.0	20	85	4	55	47	0	15	37	1.45
38911279--38911346	16	3.9	16	76	19	66	1	16	5	76	1.05
38913784--38913859	24	3.2	23	76	9	73	48	0	1	50	1.09
38913798--38913841	12	3.7	11	80	14	52	52	0	2	45	1.13
38913821--38913858	14	2.4	17	87	12	55	47	0	0	52	1.00
38914077--38914108	17	2.0	17	88	11	50	62	15	21	0	1.32
38916104--38916131	3	9.3	3	100	0	56	67	0	0	32	0.91
38919169--38919207	21	1.9	21	89	5	62	41	17	23	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38932845--38932961	37	3.3	37	66	19	104	53	10	5	30	1.56
38932800--38932957	70	2.2	70	93	4	264	56	10	3	29	1.51
38939012--38939050	20	2.0	20	85	10	53	53	2	2	41	1.28
38942796--38942858	31	2.0	31	100	0	126	28	0	22	49	1.50
38944546--38944640	35	2.9	32	85	6	136	48	8	5	37	1.56
38944552--38944657	13	8.0	13	71	19	76	50	9	5	34	1.59
38945912--38945953	7	6.1	7	77	5	50	35	0	50	14	1.43
38952819--38952860	18	2.3	18	80	8	50	40	7	0	52	1.29
38953008--38953059	18	2.9	18	75	11	52	36	7	0	55	1.29
38952952--38953072	36	3.3	35	78	12	118	34	8	0	56	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210