genome.fa.s3.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  90  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31084583--31084646	20	3.1	22	84	6	73	48	40	0	10	1.38
31084598--31084646	7	7.1	7	90	4	73	48	40	0	10	1.37
31085119--31085159	21	2.0	21	90	9	66	29	0	0	70	0.87
31085322--31085352	16	1.9	16	93	0	53	22	54	9	12	1.67
31085648--31086325	103	6.8	97	83	9	544	27	0	13	58	1.41
31085916--31086348	103	4.2	103	87	4	606	30	1	12	56	1.44
31085926--31086340	210	2.0	204	89	2	632	29	1	13	55	1.45
31094088--31094143	19	2.9	19	65	19	53	64	12	0	23	1.27
31094283--31094331	25	1.9	26	87	4	73	63	6	2	28	1.30
31094416--31094450	18	1.9	18	88	0	52	0	28	2	68	1.04
31094540--31094615	27	2.8	27	75	11	84	22	27	28	21	1.99
31101476--31101513	3	12.7	3	100	0	76	31	34	0	34	1.58
31101479--31101587	6	18.2	6	75	7	51	22	31	2	44	1.67
31101553--31101594	18	2.3	18	87	0	57	16	19	7	57	1.62
31104996--31105076	43	1.9	41	85	5	108	29	13	27	29	1.94
31111133--31111203	20	3.8	20	69	27	64	59	4	19	16	1.54
31111152--31111210	17	3.4	17	68	32	52	59	5	18	16	1.55
31111144--31111218	36	2.1	36	100	0	150	60	5	18	16	1.54
31115517--31115625	43	2.6	41	82	7	139	23	19	26	30	1.98
31116329--31116374	12	4.2	12	73	21	55	30	2	0	67	1.03
31116335--31116378	20	2.2	20	95	0	79	27	2	0	70	0.99
31117557--31117581	12	2.1	12	100	0	50	24	16	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31118645--31118674	12	2.5	12	94	0	51	30	40	23	6	1.80
31126102--31126130	3	9.7	3	100	0	58	31	34	0	34	1.58
31132273--31132362	30	3.1	29	73	19	73	58	2	3	35	1.27
31132289--31132353	21	3.4	20	73	12	57	60	0	3	36	1.13
31132726--31132841	10	12.2	10	75	13	84	31	3	2	62	1.26
31132742--31132833	19	4.9	18	77	18	82	33	3	2	60	1.25
31132741--31132841	29	3.6	28	76	14	102	31	2	1	63	1.21
31132726--31132838	19	5.9	18	74	15	70	31	3	2	61	1.26
31133044--31133117	38	1.9	38	86	8	105	37	22	2	36	1.69
31134430--31134480	22	2.3	22	100	0	102	35	0	3	60	1.15
31134694--31134808	46	2.5	46	100	0	230	21	21	24	32	1.98
31134694--31134814	23	5.3	23	83	0	170	22	21	23	32	1.98
31135764--31135858	45	2.1	45	96	0	172	43	8	12	35	1.73
31139664--31139862	103	1.9	106	91	3	332	31	17	18	32	1.94
31140026--31140191	84	2.0	85	96	1	307	34	12	11	41	1.79
31143701--31143746	18	2.4	19	79	13	51	78	0	19	2	0.86
31144970--31145527	89	6.3	89	86	1	665	28	24	22	24	2.00
31144970--31145635	223	3.0	223	83	3	745	28	24	22	23	1.99
31144956--31145635	89	7.6	89	83	4	411	28	24	23	23	1.99
31144956--31145623	134	5.0	134	81	4	774	28	23	23	24	1.99
31145669--31145883	44	4.8	44	79	6	227	29	19	22	28	1.98
31145648--31145831	89	2.1	89	90	2	289	32	19	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31145669--31145907	44	5.4	45	77	7	150	29	18	21	30	1.97
31145669--31145919	133	1.9	131	82	4	315	29	18	21	29	1.97
31145930--31146183	131	1.9	131	85	2	348	30	20	24	24	1.98
31147617--31147655	3	13.3	3	89	5	62	30	0	2	66	1.05
31148995--31149072	30	2.6	30	82	11	81	41	1	1	56	1.15
31148994--31149089	9	10.1	9	72	17	70	38	1	1	59	1.11
31149462--31149605	76	1.9	76	91	2	236	50	4	2	42	1.38
31163868--31163913	11	4.3	11	88	2	58	8	10	10	69	1.37
31163868--31163913	22	2.1	22	88	4	67	8	10	10	69	1.37
31165102--31165173	35	2.1	35	97	0	135	37	11	6	44	1.67
31168330--31168377	18	2.6	18	83	3	60	41	45	2	10	1.50
31168354--31168378	13	1.9	13	100	0	50	40	48	0	12	1.40
31168678--31168715	9	4.2	9	93	0	67	26	10	23	39	1.87
31168682--31168726	18	2.5	18	82	7	56	24	11	24	40	1.87
31183222--31183306	41	2.0	42	84	6	111	35	11	0	52	1.38
31190035--31190212	95	1.9	95	89	2	277	44	15	11	28	1.81
31191889--31191920	6	5.3	6	96	0	55	18	0	0	81	0.70
31194506--31194555	20	2.5	20	76	0	64	38	8	0	54	1.30
31207303--31207423	44	2.8	43	83	8	156	32	19	19	28	1.97
31207431--31207626	44	4.6	45	71	14	139	30	21	21	25	1.99
31207474--31207626	81	1.9	81	90	0	243	30	22	20	26	1.98
31207347--31207676	125	2.6	127	76	6	321	30	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31209361--31209415	20	3.1	18	73	14	51	36	9	0	54	1.32
31209359--31209409	20	2.5	20	77	0	66	39	7	0	52	1.30
31210236--31210428	96	2.0	97	98	1	379	25	18	17	37	1.93
31220870--31220909	21	1.9	21	94	0	71	37	17	7	37	1.78
31221677--31221970	44	6.7	44	84	5	362	28	24	18	27	1.98
31221970--31222380	88	4.7	88	90	0	624	19	23	28	28	1.98
31222008--31222146	44	3.2	44	64	8	111	22	26	26	24	2.00
31221993--31222129	45	3.1	45	63	12	111	19	25	27	27	1.99
31229152--31229209	22	2.6	22	84	7	73	43	17	3	36	1.66
31229165--31229262	19	4.8	19	85	9	106	38	16	8	36	1.78
31229199--31229261	21	3.1	21	90	9	112	38	14	9	38	1.78
31252681--31252720	21	1.9	21	100	0	80	35	25	25	15	1.94
31258681--31258740	20	3.0	21	76	9	54	35	0	1	63	1.05
31259289--31259336	20	2.4	20	89	0	69	64	2	2	31	1.16
31259270--31259337	20	3.9	17	78	16	68	61	2	2	32	1.26
31267099--31267140	21	2.0	21	95	0	75	45	19	9	26	1.80
31274449--31274586	54	2.6	54	78	6	163	21	28	23	25	1.99
31277674--31277702	12	2.3	13	88	11	51	24	0	0	75	0.80
31298111--31298171	31	2.0	31	86	0	86	39	11	9	39	1.75
31299402--31299474	38	1.9	38	100	0	146	26	0	5	68	1.11
31303657--31303700	11	4.0	11	100	0	88	27	18	18	36	1.94
31314509--31314915	121	3.4	121	98	0	789	42	0	4	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31314692--31314876	38	4.7	37	69	18	106	43	1	5	49	1.32
31321404--31321430	2	13.5	2	100	0	54	51	0	48	0	1.00
31327716--31327744	2	14.5	2	100	0	58	51	0	48	0	1.00
31327889--31327977	25	3.1	30	79	15	116	25	24	6	42	1.79
31329906--31329942	19	1.9	20	88	5	58	29	0	2	67	1.04
31329911--31329951	19	2.2	19	86	0	55	24	2	4	68	1.22
31329964--31330002	17	2.2	17	86	9	51	38	0	0	61	0.96
31330041--31330087	22	2.1	22	88	0	67	31	0	2	65	1.04
31333518--31333925	208	2.0	205	92	2	683	33	7	14	43	1.75
31347649--31348083	217	2.0	217	100	0	870	31	20	17	30	1.95
31348407--31348442	18	2.0	18	94	0	63	52	5	13	27	1.63
31360594--31360618	5	5.0	5	100	0	50	20	40	0	40	1.52
31363032--31363061	16	1.9	15	93	6	51	83	3	13	0	0.77
31368268--31368296	3	9.7	3	100	0	58	65	0	34	0	0.93
31373916--31373950	15	2.4	15	90	4	54	48	0	8	42	1.33
31379649--31379710	21	3.0	20	83	9	79	24	3	0	72	0.99
31379651--31379714	17	3.5	17	79	16	67	25	3	0	71	1.00
31379650--31379722	25	2.9	25	84	13	89	24	4	0	71	1.04
31379840--31379871	12	2.7	12	100	0	64	31	25	9	34	1.87
31379881--31379944	22	2.8	23	81	11	69	25	50	9	15	1.74
31381073--31381160	1	88.0	1	67	0	50	84	0	12	3	0.75
31381054--31381093	17	2.3	17	83	16	55	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31381073--31381149	22	3.5	22	77	13	77	84	0	11	3	0.75
31381051--31381099	16	3.1	16	88	5	64	79	0	2	18	0.83
31381089--31381160	6	11.7	6	94	5	126	84	0	15	0	0.62
31381816--31381845	15	2.0	15	100	0	60	33	0	26	40	1.57
31383493--31383550	30	1.9	30	86	6	82	36	22	8	32	1.85
31386032--31386067	18	1.9	19	88	5	56	27	0	5	66	1.13
31388706--31388741	18	1.9	19	88	5	56	27	0	5	66	1.13
31391416--31391483	11	5.7	11	80	13	73	67	1	10	20	1.28
31391418--31391448	16	2.0	16	93	6	55	70	0	12	16	1.16
31391435--31391516	19	3.7	22	76	14	80	71	2	8	17	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210