genome.fa.s3.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  99  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33903837--33903903	3	23.3	3	84	6	86	74	0	25	0	0.82
33903836--33903919	9	9.1	9	83	10	62	77	0	22	0	0.77
33903836--33903918	6	14.5	6	82	9	75	77	0	22	0	0.78
33903870--33903919	17	2.9	16	80	13	55	84	0	16	0	0.63
33904204--33904282	17	5.4	14	77	18	72	78	0	21	0	0.75
33904204--33904277	24	3.1	24	83	9	98	78	0	21	0	0.75
33904204--33904274	31	2.3	31	87	4	99	77	0	22	0	0.77
33904882--33905090	17	11.9	17	70	13	97	33	14	11	40	1.82
33905011--33905088	19	4.1	19	80	14	90	37	14	8	39	1.77
33905031--33905106	36	2.1	37	85	7	102	35	11	10	42	1.76
33904887--33905090	18	11.6	17	70	16	91	33	14	11	40	1.82
33905562--33905601	3	13.3	3	100	0	80	32	0	0	67	0.91
33918615--33919174	96	5.8	96	85	5	672	32	24	21	21	1.98
33918635--33919175	49	11.2	48	69	8	287	32	24	21	21	1.98
33919744--33919778	16	2.2	16	94	0	61	25	14	17	42	1.86
33922917--33923014	48	2.0	48	88	7	146	45	16	25	12	1.82
33923034--33923072	19	2.1	19	95	0	69	41	25	23	10	1.86
33924437--33925171	100	7.4	100	94	0	1179	29	19	24	25	1.99
33924441--33925171	50	14.6	50	70	6	478	29	19	24	25	1.99
33925347--33925522	44	4.0	44	62	19	107	30	18	23	27	1.98
33925303--33925493	43	4.4	43	65	16	124	29	19	24	26	1.98
33925306--33925616	130	2.4	130	92	3	509	29	19	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33925629--33925849	45	4.9	45	81	3	248	29	15	25	29	1.96
33925627--33925849	89	2.5	90	79	3	234	29	15	25	30	1.96
33927332--33927373	21	2.0	20	86	4	57	26	0	4	69	1.08
33927604--33927668	21	3.1	21	73	16	64	38	7	0	53	1.30
33930590--33930646	11	5.2	11	71	0	51	19	1	10	68	1.28
33930590--33930646	22	2.6	22	85	0	78	19	1	10	68	1.28
33944397--33944435	16	2.3	18	86	8	55	30	17	20	30	1.96
33947599--33947628	3	10.0	3	100	0	60	33	0	0	66	0.92
33950465--33950510	24	1.9	24	86	0	65	28	19	32	19	1.96
33956343--33956381	21	1.9	20	94	5	69	30	25	10	33	1.89
33958785--33959413	314	2.0	315	99	0	1251	37	10	13	38	1.80
33961417--33961472	29	1.9	29	85	0	76	25	14	8	51	1.70
33977031--33977081	25	2.1	24	88	3	75	62	7	0	29	1.23
33979862--33979907	23	2.0	23	100	0	92	30	8	0	60	1.26
33984275--33985243	483	2.0	484	98	1	1881	33	17	13	35	1.89
33997901--33997937	2	17.5	2	89	10	56	45	2	2	48	1.30
33997901--33997941	13	3.2	13	90	10	66	46	2	4	46	1.37
33998482--33998507	4	6.5	4	100	0	52	23	0	0	76	0.78
33999216--33999242	6	4.5	6	100	0	54	85	0	0	14	0.61
33999832--33999862	2	16.0	2	93	6	55	51	0	0	48	1.00
34011736--34011936	43	4.7	43	95	1	350	30	30	18	19	1.96
34014873--34014900	12	2.3	12	100	0	56	75	10	0	14	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34015652--34015698	21	2.2	21	84	3	58	44	4	6	44	1.49
34015950--34015974	7	3.6	7	100	0	50	48	24	0	28	1.52
34016150--34016211	14	4.4	14	70	11	54	37	40	1	20	1.63
34016524--34016632	57	1.9	58	83	5	141	43	34	0	21	1.59
34016500--34016676	21	8.2	21	69	13	67	44	32	2	21	1.65
34016500--34016632	15	9.3	14	67	14	65	44	33	1	21	1.61
34016859--34016931	37	1.9	38	88	2	112	32	23	20	23	1.98
34016866--34017459	114	5.2	113	85	5	763	27	25	21	25	1.99
34017245--34017641	187	2.1	187	89	0	623	25	26	22	25	2.00
34017359--34017532	73	2.4	73	83	3	242	26	25	20	27	1.99
34017131--34018059	301	3.1	298	84	3	1218	26	24	22	26	2.00
34017434--34017760	114	2.9	112	85	2	429	27	24	21	27	1.99
34017546--34017946	187	2.2	186	83	2	491	26	23	21	28	1.99
34017673--34017833	73	2.2	73	86	0	223	28	21	20	29	1.98
34017746--34018059	114	2.8	113	82	0	376	26	23	22	27	1.99
34018358--34018530	43	4.0	43	75	14	169	23	19	25	31	1.98
34031903--34031961	21	2.5	25	86	10	81	32	6	0	61	1.22
34034331--34034441	43	2.6	43	79	1	125	29	16	20	33	1.94
34041032--34041085	26	2.1	26	100	0	108	31	9	18	40	1.82
34045263--34045493	46	5.0	46	96	0	399	28	27	9	34	1.88
34053004--34053095	33	2.7	33	75	9	78	28	21	13	36	1.91
34062482--34062545	24	2.6	24	74	16	60	67	3	0	29	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34063438--34063487	22	2.3	22	92	0	82	52	4	12	32	1.57
34068308--34068415	32	3.4	31	81	8	94	24	15	18	41	1.89
34071641--34071682	22	2.0	21	85	4	57	59	0	4	35	1.19
34079404--34079430	3	9.0	3	100	0	54	66	0	0	33	0.92
34081737--34081778	16	2.6	16	81	7	50	64	4	7	23	1.38
34081776--34081827	10	5.3	10	81	6	54	75	5	19	0	1.01
34081776--34081847	9	7.8	9	76	11	58	73	4	22	0	1.00
34081805--34081852	21	2.3	21	82	10	62	68	0	31	0	0.90
34081815--34081848	17	1.9	18	94	5	61	70	0	29	0	0.87
34081782--34081850	30	2.3	31	82	7	81	72	4	23	0	1.02
34084660--34084687	4	7.0	4	100	0	56	25	0	0	75	0.81
34095590--34095706	40	3.0	38	78	14	114	41	17	23	17	1.89
34095590--34095706	38	3.0	39	79	14	125	41	17	23	17	1.89
34096637--34096695	24	2.4	24	94	2	100	33	13	25	27	1.93
34096974--34097257	88	3.2	88	88	0	415	27	20	23	27	1.99
34097247--34097362	43	2.7	43	82	2	135	27	18	25	27	1.98
34100537--34100609	37	1.9	38	86	2	103	42	2	23	31	1.68
34102905--34103059	49	3.1	50	75	13	135	36	10	0	52	1.41
34102982--34103079	51	2.0	50	82	7	121	36	10	0	53	1.35
34103077--34103110	4	8.0	4	87	12	50	23	0	0	76	0.79
34103063--34103105	18	2.4	18	88	7	61	23	2	0	74	0.93
34103075--34103110	9	4.1	9	96	3	65	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34103077--34103110	13	2.6	14	86	13	54	23	0	0	76	0.79
34105007--34105060	21	2.6	21	75	0	54	16	25	18	38	1.92
34104970--34105060	42	2.2	42	83	0	110	13	24	19	42	1.87
34112631--34112664	17	1.9	18	88	5	52	70	0	26	2	1.01
34114900--34114937	15	2.5	15	83	12	51	52	0	0	47	1.00
34114898--34114935	17	2.1	19	85	9	53	55	0	0	44	0.99
34116685--34116718	17	2.0	17	88	0	50	26	2	0	70	1.01
34117093--34117144	17	3.1	17	97	0	95	42	11	21	25	1.86
34117666--34117771	41	2.6	41	89	1	160	32	21	19	26	1.97
34120303--34120332	12	2.5	12	100	0	60	63	0	0	36	0.95
34123443--34123471	6	4.8	6	100	0	58	17	13	17	51	1.76
34124524--34124637	58	1.9	59	87	5	169	26	14	16	42	1.87
34131866--34131903	18	2.1	19	85	5	51	50	0	13	36	1.42
34133228--34133278	22	2.3	22	83	6	59	54	1	3	39	1.30
34137917--34137989	34	2.1	34	97	0	137	20	10	24	43	1.84
34144389--34144430	21	2.0	22	95	4	77	9	26	28	35	1.88
34144442--34144528	18	4.8	18	72	10	70	16	18	27	37	1.92
34152362--34152397	18	1.9	19	88	5	56	19	2	2	75	1.06
34154470--34154504	6	5.8	6	100	0	70	17	17	31	34	1.93
34154502--34154547	18	2.6	18	85	0	65	28	26	23	21	1.99
34160195--34160305	41	2.7	41	80	1	134	24	18	25	31	1.98
34160615--34160811	14	13.8	14	70	13	107	19	1	30	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34160615--34160811	7	27.6	7	68	12	71	19	1	30	47	1.59
34160742--34160811	15	4.8	15	78	15	67	17	0	32	50	1.46
34160742--34160812	23	3.3	21	83	11	81	16	0	33	49	1.47
34160862--34160915	7	7.7	7	80	0	63	20	0	33	46	1.51
34160862--34160964	14	7.2	14	72	8	73	21	0	33	44	1.59
34160857--34160995	21	6.5	21	68	10	66	24	0	30	43	1.59
34160960--34160988	15	1.9	15	100	0	58	27	0	37	34	1.57
34163162--34163441	86	3.2	86	92	0	443	31	8	18	41	1.80
34163507--34163591	40	2.1	40	82	4	100	29	7	14	49	1.69
34164766--34164993	43	5.3	43	85	2	271	22	17	28	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210