genome.fa.s3.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  126  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42191061--42191140	1	80.0	1	69	0	52	85	0	12	2	0.71
42191062--42191140	6	13.8	6	80	12	87	84	0	12	2	0.71
42191061--42191140	11	6.9	11	78	8	79	85	0	12	2	0.71
42191060--42191145	31	2.9	29	81	16	113	82	0	12	4	0.81
42191062--42191145	34	2.5	35	84	9	111	83	0	13	3	0.77
42192066--42192170	44	2.4	45	80	6	115	29	20	20	29	1.98
42192068--42192193	44	2.8	44	79	3	110	28	17	23	30	1.97
42192209--42193011	44	17.8	43	73	12	397	32	19	20	27	1.97
42192209--42193160	317	3.0	316	86	5	1228	32	19	20	26	1.97
42192528--42192954	229	1.9	229	80	3	511	31	20	20	27	1.98
42192478--42192998	273	1.9	273	84	3	699	31	20	20	27	1.98
42192798--42193146	132	2.6	136	80	8	372	30	20	22	26	1.99
42192814--42193226	229	1.8	229	78	6	478	30	20	23	25	1.98
42193081--42193178	44	2.3	43	90	1	151	30	26	21	21	1.98
42193081--42193193	44	2.6	44	85	2	138	30	23	23	22	1.99
42194956--42195064	41	2.7	41	84	2	139	26	26	19	27	1.99
42197366--42197411	22	2.0	24	83	8	60	32	6	4	56	1.45
42203280--42203305	4	6.5	4	100	0	52	73	0	0	26	0.84
42213575--42213650	29	2.5	31	76	4	84	23	13	13	50	1.76
42215385--42215870	164	3.0	163	89	4	714	25	17	17	39	1.91
42215895--42215923	5	6.0	5	92	8	51	41	0	0	58	0.98
42226689--42226775	43	2.0	43	86	0	120	34	11	10	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42226860--42226925	34	1.9	34	84	9	89	40	3	1	54	1.25
42226860--42226928	35	2.0	35	83	11	88	40	2	1	55	1.24
42227860--42227927	26	2.6	26	92	2	109	60	4	1	33	1.26
42228762--42228837	40	1.9	40	86	0	107	59	2	5	32	1.34
42236565--42236589	12	2.1	12	100	0	50	24	36	24	16	1.94
42236749--42236811	9	6.9	9	81	3	81	39	30	7	22	1.82
42237275--42237470	50	3.8	50	80	6	171	29	19	27	23	1.98
42237330--42237461	50	2.6	50	86	0	174	28	22	29	19	1.98
42237329--42237514	50	3.8	49	81	9	164	28	22	27	21	1.99
42238444--42238776	123	2.7	123	97	0	612	28	15	21	34	1.94
42242116--42242224	19	5.8	19	74	21	106	50	4	7	37	1.51
42242108--42242235	37	3.5	37	94	0	229	50	4	6	38	1.48
42242231--42242496	29	9.2	29	89	1	399	26	0	28	45	1.54
42245242--42245297	22	2.5	22	85	2	76	39	1	32	26	1.67
42245282--42245314	10	3.0	11	86	13	50	45	0	36	18	1.49
42265617--42265657	20	2.0	22	85	9	59	41	2	2	53	1.27
42265977--42266007	15	2.1	15	100	0	62	32	6	0	61	1.21
42266073--42266114	3	14.0	3	100	0	84	66	0	0	33	0.92
42266843--42266877	6	5.5	6	90	10	52	37	0	0	62	0.95
42267129--42267161	2	16.5	2	100	0	66	48	0	0	51	1.00
42268551--42269292	23	31.9	22	70	17	192	41	17	13	27	1.87
42268542--42269277	93	7.9	93	96	0	1237	41	17	13	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42269791--42269868	28	2.8	28	96	0	138	32	21	11	34	1.89
42271357--42271422	28	2.5	28	80	7	66	60	0	3	36	1.12
42271411--42271457	11	4.7	10	84	10	53	65	0	2	31	1.04
42271406--42271446	21	2.0	21	85	9	57	63	0	2	34	1.08
42271420--42271457	19	1.9	19	85	15	51	65	0	0	34	0.93
42271407--42271465	27	2.1	27	81	12	66	62	0	3	33	1.12
42271660--42271701	3	14.0	3	100	0	84	66	0	0	33	0.92
42274470--42274548	28	2.8	29	74	14	83	62	0	3	34	1.14
42274476--42274548	30	2.5	30	78	6	89	58	0	4	36	1.17
42274245--42274536	156	1.9	157	93	2	507	42	13	9	34	1.77
42286727--42286830	52	2.0	52	86	0	145	29	25	11	32	1.91
42287131--42288806	844	2.0	845	96	0	3097	37	13	21	27	1.90
42292230--42292273	13	3.3	13	81	12	54	4	15	4	75	1.14
42292230--42292280	6	8.0	6	77	18	50	3	17	3	74	1.12
42292251--42292291	18	2.4	16	84	11	55	4	17	0	78	0.93
42301416--42301482	28	2.4	28	75	12	66	55	4	1	38	1.29
42302423--42302477	18	3.1	17	82	15	67	30	0	0	69	0.89
42304123--42304173	13	3.9	13	100	0	102	23	7	29	39	1.83
42304772--42304819	12	4.0	12	80	0	60	22	39	10	27	1.87
42306189--42306358	72	2.4	72	86	4	229	55	14	4	25	1.58
42306787--42306833	18	2.6	18	75	0	58	38	17	10	34	1.84
42307540--42307582	20	2.2	20	100	0	86	48	9	4	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42308968--42309016	20	2.5	19	80	6	62	67	6	10	16	1.39
42309933--42309972	20	2.0	20	95	0	71	25	7	0	67	1.16
42310598--42310679	40	2.0	41	95	4	148	37	26	15	19	1.92
42311367--42311516	41	3.7	41	92	0	237	24	27	22	26	1.99
42314725--42314755	9	3.4	9	90	0	53	25	12	22	38	1.90
42315800--42315897	51	1.9	51	83	4	126	44	3	24	27	1.68
42315859--42315935	11	6.9	11	73	24	72	44	1	28	25	1.62
42315859--42315935	22	3.5	22	83	16	97	44	1	28	25	1.62
42315859--42315935	33	2.3	33	82	10	102	44	1	28	25	1.62
42317440--42317472	14	2.4	14	90	5	50	39	12	15	33	1.84
42317661--42317710	23	2.2	24	80	16	63	68	4	4	24	1.24
42317663--42317710	22	2.2	21	85	10	62	68	4	4	22	1.24
42319526--42319650	6	24.0	5	78	13	71	23	17	0	59	1.38
42319538--42319594	6	9.8	6	92	5	73	22	24	0	52	1.47
42319529--42319595	29	2.4	29	90	5	102	23	23	0	52	1.48
42319587--42319634	19	2.4	21	89	6	73	25	8	0	66	1.19
42319616--42319656	15	2.7	15	85	14	50	17	12	2	68	1.31
42319702--42319753	19	2.7	19	93	0	86	32	17	1	48	1.58
42319737--42319821	23	3.5	23	76	14	98	31	15	0	52	1.43
42320232--42320532	5	55.4	5	69	21	98	25	15	0	57	1.44
42320232--42320310	22	3.6	22	89	3	115	17	20	1	60	1.43
42320247--42320532	28	10.5	27	70	17	123	26	15	1	57	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42320232--42320314	27	3.1	27	83	13	91	19	19	1	60	1.43
42320276--42320342	22	3.0	22	84	8	73	23	10	0	65	1.23
42320916--42320999	5	15.6	5	82	11	96	19	19	1	60	1.42
42320916--42321001	22	4.0	20	86	8	100	20	18	1	59	1.45
42320916--42321021	27	3.9	26	86	7	133	19	17	0	61	1.40
42320994--42321043	22	2.3	22	82	10	66	24	12	0	64	1.27
42321017--42321124	56	1.9	57	90	5	175	24	16	0	59	1.37
42324457--42324802	75	4.6	75	95	0	620	31	27	19	21	1.97
42324557--42324768	42	5.5	42	74	19	235	31	27	19	21	1.97
42324457--42324802	150	2.3	150	100	0	692	31	27	19	21	1.97
42325604--42325860	116	2.2	112	78	9	252	33	22	17	26	1.96
42325710--42326091	173	2.3	168	81	8	429	30	21	17	30	1.96
42326487--42326548	29	2.2	28	85	2	79	24	14	17	43	1.86
42334096--42334363	44	6.2	44	71	18	172	29	21	22	27	1.99
42334142--42334430	126	2.3	129	82	9	335	29	20	22	28	1.98
42335754--42335792	14	2.9	13	88	11	53	28	2	7	61	1.37
42339456--42339509	25	2.2	25	83	6	65	20	14	9	55	1.66
42340290--42340369	16	4.9	16	78	17	67	83	5	11	0	0.78
42340291--42340367	10	6.8	11	78	21	54	84	3	11	0	0.75
42340308--42340368	5	11.8	5	81	13	61	83	1	14	0	0.72
42340291--42340368	18	3.9	20	85	9	72	84	3	11	0	0.74
42340291--42340351	1	61.0	1	73	0	50	86	4	8	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42340884--42340925	7	6.0	7	86	8	59	71	0	14	14	1.15
42340868--42340925	15	3.8	15	80	19	59	70	1	13	13	1.24
42342153--42343031	88	10.0	88	92	0	1373	27	18	25	28	1.98
42343429--42343592	42	3.9	41	74	8	116	29	22	22	25	1.99
42343435--42343541	40	2.6	42	80	12	114	29	22	24	23	1.99
42343385--42343678	126	2.3	129	79	9	318	30	19	22	27	1.98
42344991--42345029	14	2.9	13	88	11	53	28	2	7	61	1.37
42345432--42345479	24	2.0	24	84	8	62	35	14	8	41	1.76
42347845--42347871	14	1.9	14	100	0	54	37	11	14	37	1.82
42348477--42348530	24	2.3	23	75	15	56	25	0	11	62	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210