genome.fa.s3.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  166  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55630398--55630450	22	2.4	22	78	9	63	16	24	20	37	1.93
55641557--55641601	17	2.6	18	80	16	51	42	0	6	51	1.28
55652272--55652324	23	2.3	23	96	0	97	30	24	20	24	1.99
55659804--55659850	20	2.3	20	96	0	85	61	14	12	10	1.56
55662438--55662638	58	3.4	59	92	2	341	50	14	23	11	1.75
55663594--55663646	26	2.0	26	92	0	88	18	20	33	26	1.96
55663620--55663900	43	6.6	41	77	12	264	22	15	27	34	1.94
55663620--55663900	85	3.3	85	91	0	436	22	15	27	34	1.94
55665968--55666012	6	6.8	6	81	18	54	20	2	0	77	0.87
55665978--55666029	22	2.4	21	78	9	59	23	3	1	71	1.13
55671272--55671296	13	1.9	13	100	0	50	0	16	0	84	0.63
55689987--55690019	13	2.4	14	85	10	50	75	0	3	21	0.93
55689981--55690033	22	2.6	21	82	11	65	73	0	5	20	1.03
55699667--55700411	114	6.5	114	79	2	703	32	16	21	28	1.95
55699709--55700426	228	3.2	228	86	1	974	33	16	21	28	1.95
55700683--55700759	7	11.0	7	73	5	57	14	0	41	44	1.45
55702626--55702654	14	2.0	15	93	6	51	6	6	17	68	1.34
55702582--55702660	39	2.0	38	85	9	106	15	11	21	51	1.74
55703312--55703399	44	2.0	44	97	0	167	43	10	13	32	1.78
55704390--55704475	25	3.5	24	88	6	102	43	15	3	38	1.63
55704415--55704467	16	3.8	16	68	31	57	45	15	3	35	1.64
55704284--55704694	151	2.7	151	90	3	599	42	16	3	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55704564--55704646	25	3.3	24	76	6	67	44	12	1	42	1.49
55704582--55704720	25	5.5	25	76	9	113	42	15	3	38	1.65
55704650--55704723	26	2.9	25	76	6	78	39	18	6	35	1.78
55709959--55710018	21	2.9	21	82	0	75	30	18	46	5	1.70
55710326--55710673	42	8.3	42	87	2	486	34	22	20	22	1.97
55710606--55710757	42	3.6	42	81	7	166	29	23	18	28	1.98
55714800--55714975	51	3.5	50	81	5	187	30	26	17	26	1.97
55717946--55717976	12	2.6	12	94	0	53	29	0	16	54	1.42
55719362--55719393	11	2.6	13	90	9	50	46	9	6	37	1.61
55720460--55720892	102	4.2	102	90	1	679	21	18	28	32	1.96
55727211--55727252	5	8.4	5	82	17	52	19	0	0	80	0.70
55730737--55730975	40	6.0	40	73	6	180	36	16	29	17	1.92
55730737--55730802	20	3.3	20	72	8	71	34	16	36	12	1.86
55730882--55730920	20	2.0	20	94	0	69	35	17	28	17	1.94
55730963--55731004	20	2.4	17	81	18	50	38	4	23	33	1.76
55730817--55730990	60	2.9	58	72	5	141	37	15	26	20	1.93
55730969--55731015	20	2.3	20	96	0	85	42	6	23	27	1.78
55734777--55734809	18	1.9	17	88	11	50	30	15	12	42	1.83
55735856--55736134	54	5.2	53	77	8	233	21	17	18	42	1.89
55735872--55736117	81	3.0	79	78	9	255	19	17	21	41	1.90
55735857--55736134	27	10.3	26	79	5	198	20	17	19	42	1.89
55735857--55736134	81	3.4	80	76	7	240	20	17	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55737633--55737685	22	2.4	22	93	0	88	16	47	13	22	1.82
55741176--55741207	13	2.5	13	95	5	57	18	0	0	81	0.70
55741544--55742073	87	6.1	87	91	0	792	24	24	22	29	1.99
55741573--55741709	44	3.1	44	64	21	106	27	25	21	24	1.99
55741881--55742013	43	3.1	43	63	21	105	24	22	24	29	1.99
55741920--55742057	44	3.2	44	64	13	104	26	24	21	26	1.99
55746693--55746736	20	2.1	21	83	4	54	11	22	11	54	1.68
55749142--55749173	13	2.5	13	95	5	57	18	0	0	81	0.70
55749746--55749797	13	4.1	13	76	11	54	73	5	19	1	1.14
55749752--55749801	25	2.0	25	84	11	66	72	4	20	4	1.18
55751272--55751325	25	2.2	25	86	0	72	11	35	31	22	1.89
55752112--55752389	40	6.9	40	80	6	312	34	16	29	19	1.93
55752112--55752389	80	3.5	78	83	6	344	34	16	29	19	1.93
55752184--55752326	20	7.2	20	63	15	62	36	16	29	18	1.92
55752112--55752389	120	2.3	120	84	4	364	34	16	29	19	1.93
55756106--55756142	18	2.0	19	89	5	58	45	29	0	24	1.53
55759351--55759385	18	1.9	18	88	0	52	42	11	17	28	1.83
55767444--55767509	25	2.6	26	83	13	93	28	0	1	69	0.97
55767438--55767515	24	3.3	23	84	10	97	28	0	1	70	0.95
55767448--55767535	25	3.6	24	79	11	90	29	3	2	64	1.22
55767757--55767802	22	2.1	22	84	8	58	15	4	8	71	1.26
55767768--55767818	22	2.3	22	82	3	57	17	5	9	66	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55771234--55771295	31	2.0	31	96	0	115	35	12	1	50	1.51
55771898--55772000	1	103.0	1	66	0	53	83	10	4	0	0.84
55771901--55772001	6	17.0	6	76	15	68	82	11	4	0	0.88
55771900--55771991	7	12.9	7	70	22	59	82	10	5	1	0.87
55771899--55771992	14	6.5	14	73	17	77	82	10	5	1	0.86
55771899--55772000	32	3.2	32	86	8	145	83	10	4	0	0.84
55771898--55772000	25	4.2	24	75	16	79	83	10	4	0	0.84
55772441--55772544	53	1.9	54	90	1	165	46	16	26	10	1.79
55773354--55773714	142	2.5	143	88	0	535	28	19	22	29	1.98
55773354--55773773	142	2.9	142	83	2	441	29	19	21	29	1.98
55773748--55773882	44	3.1	44	67	0	135	37	22	14	25	1.92
55775189--55775249	24	2.5	24	89	7	88	32	0	1	65	1.02
55775446--55775498	21	2.6	20	79	8	54	22	7	7	62	1.47
55775466--55775524	24	2.4	25	82	5	66	28	10	5	55	1.54
55799404--55799508	3	35.0	3	77	7	106	60	2	2	34	1.26
55801097--55801650	44	12.5	44	70	12	224	28	21	19	31	1.97
55800989--55801670	227	3.1	227	88	2	920	27	20	19	32	1.97
55802120--55802177	24	2.4	24	97	0	107	29	27	12	31	1.92
55803067--55803111	13	3.5	12	88	11	63	0	13	0	86	0.57
55808417--55808529	3	38.0	3	75	8	106	60	3	4	31	1.34
55809201--55809237	17	2.1	18	90	5	58	81	0	0	18	0.70
55809782--55809871	33	2.7	33	79	6	92	38	36	11	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55817565--55817900	122	2.8	121	80	2	334	34	13	22	28	1.93
55817615--55817900	61	4.7	61	79	3	254	33	14	23	29	1.94
55822599--55822695	50	1.9	50	100	0	194	28	17	24	28	1.97
55824781--55824893	47	2.3	49	87	3	158	27	15	25	30	1.96
55824785--55824893	49	2.3	47	87	3	146	28	14	25	31	1.95
55825374--55825475	50	2.0	50	98	0	195	34	5	24	35	1.80
55827849--55827937	43	2.1	43	100	0	178	26	17	23	31	1.97
55830655--55831310	88	7.4	88	89	0	997	28	27	24	20	1.99
55830722--55831305	44	13.2	44	60	10	170	28	26	24	20	1.99
55830655--55831333	353	1.9	353	90	0	1070	27	27	23	20	1.99
55831321--55831442	44	2.8	44	83	5	158	27	17	26	29	1.97
55831932--55832310	45	8.7	44	72	13	201	29	19	22	27	1.98
55831789--55832212	217	2.0	217	82	4	516	26	20	24	28	1.99
55831896--55832317	217	1.9	216	79	6	469	28	19	23	28	1.98
55832824--55832913	19	4.7	19	91	0	153	36	8	16	37	1.80
55832824--55832936	38	2.9	38	90	5	172	36	8	16	38	1.80
55832824--55832936	19	5.6	22	81	12	97	36	8	16	38	1.80
55833118--55833162	23	2.0	23	81	0	54	22	0	15	62	1.33
55847233--55847258	13	2.0	13	100	0	52	0	30	7	61	1.24
55847233--55847331	52	1.9	52	93	0	171	13	27	10	49	1.73
55852023--55852058	16	2.2	16	100	0	72	38	36	0	25	1.56
55855534--55855581	4	12.0	4	100	0	96	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55861291--55861365	20	3.8	18	73	24	55	53	0	1	45	1.08
55861333--55861365	17	2.0	17	94	5	59	51	0	0	48	1.00
55861428--55861795	191	1.9	190	81	2	434	31	13	16	38	1.88
55871228--55871341	56	2.0	57	89	1	176	50	14	11	23	1.76
55871708--55871771	27	2.4	27	100	0	128	40	15	14	29	1.86
55872928--55872985	29	2.0	29	93	0	98	27	29	22	20	1.99
55879858--55880288	216	2.0	216	87	0	621	39	19	15	26	1.91
55886534--55886612	17	4.9	16	74	21	76	18	5	1	74	1.07
55886574--55886620	12	3.9	12	76	17	53	23	6	0	70	1.10
55887620--55887649	10	3.0	10	95	0	51	30	0	43	26	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210