genome.fa.s3.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  44  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15469842--15469873	16	2.1	15	94	5	55	75	0	6	18	1.01
15470097--15470143	23	2.0	23	84	8	60	68	10	4	17	1.35
15480140--15480186	20	2.3	20	82	7	60	57	0	4	38	1.18
15488092--15488152	29	2.1	28	84	3	77	29	13	16	40	1.86
15488415--15488651	126	1.9	124	86	5	343	31	13	22	32	1.93
15496577--15496611	6	5.8	6	100	0	70	17	0	0	82	0.66
15497507--15497562	27	2.1	27	100	0	112	39	10	7	42	1.67
15501270--15501520	85	3.0	85	84	0	322	26	16	20	36	1.93
15501621--15501693	38	1.9	38	83	10	96	35	17	8	38	1.80
15504973--15505010	12	3.2	12	81	11	51	57	0	13	28	1.36
15506164--15506211	4	12.0	4	100	0	96	25	0	25	50	1.50
15507778--15507855	24	3.2	24	75	10	95	30	16	23	29	1.96
15507770--15507880	49	2.3	49	100	0	222	31	18	22	27	1.97
15507770--15507904	25	5.5	25	75	9	118	31	17	23	26	1.97
15509101--15509138	2	19.0	2	100	0	76	0	0	50	50	1.00
15516684--15516739	25	2.2	25	81	12	69	32	1	3	62	1.23
15518919--15518961	21	2.1	20	87	12	61	81	0	16	2	0.79
15518930--15518964	10	3.4	10	88	4	52	80	0	20	0	0.72
15521785--15521832	10	4.6	10	77	10	51	60	2	0	37	1.09
15540456--15540506	26	2.0	26	92	0	84	25	23	9	41	1.85
15543685--15543833	41	3.6	41	88	3	210	35	23	18	22	1.95
15543943--15543974	2	16.5	2	93	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15544444--15544506	27	2.3	27	83	10	74	36	22	3	38	1.70
15545053--15545091	13	3.0	13	100	0	78	46	23	0	30	1.53
15546079--15546113	15	2.2	16	90	5	54	82	0	14	2	0.77
15546548--15546573	12	2.2	12	100	0	52	30	0	19	50	1.48
15553300--15553350	3	17.0	3	84	8	50	58	0	1	39	1.09
15553396--15553427	8	4.0	8	91	0	55	84	0	15	0	0.63
15572505--15572543	20	2.0	20	89	0	60	10	30	17	41	1.83
15575515--15575554	20	2.0	20	90	0	62	7	27	22	42	1.80
15578205--15578364	27	5.9	27	85	2	187	36	15	21	26	1.93
15579382--15579422	20	2.0	20	100	0	82	58	4	4	31	1.40
15585046--15585099	20	2.8	19	82	2	72	50	11	0	38	1.38
15587335--15588109	387	2.0	388	94	0	1345	31	22	11	34	1.90
15590900--15591086	32	5.8	32	85	0	221	38	19	18	23	1.93
15590887--15591080	96	2.0	95	86	1	271	39	18	19	22	1.92
15590900--15591071	64	2.7	64	86	0	245	37	18	19	24	1.94
15591135--15591197	27	2.4	26	82	10	74	36	20	22	20	1.95
15591260--15591318	24	2.5	24	82	0	73	45	18	6	28	1.75
15591273--15591370	24	4.1	24	82	0	88	42	19	7	30	1.78
15591388--15591508	27	4.5	27	79	7	111	22	23	18	35	1.95
15591415--15591629	27	8.0	27	79	5	184	20	19	19	40	1.92
15591472--15591640	54	3.1	54	85	0	239	22	18	17	41	1.90
15591413--15591640	81	2.8	81	79	2	226	22	19	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15591472--15591640	27	6.3	27	81	2	187	22	18	17	41	1.90
15601298--15601429	35	3.7	35	72	13	97	34	18	22	23	1.96
15611453--15611509	27	2.1	27	90	0	87	21	22	10	45	1.82
15611700--15611764	26	2.5	26	85	7	87	33	29	16	20	1.95
15612794--15613250	231	2.0	231	86	3	643	34	17	18	29	1.94
15621459--15621488	15	2.1	15	93	6	53	10	0	13	76	1.01
15627650--15627813	40	4.1	40	77	3	170	20	28	17	33	1.96
15627650--15627813	80	2.1	79	83	3	204	20	28	17	33	1.96
15632011--15632152	50	2.8	50	84	0	167	22	29	22	25	1.99
15638329--15638362	6	5.3	6	86	13	50	14	17	0	67	1.23
15639991--15640135	29	4.9	29	67	11	78	36	26	20	16	1.93
15643327--15643378	27	1.9	27	84	0	68	23	25	9	42	1.84
15643524--15643576	27	2.0	27	92	0	88	30	20	13	35	1.91
15644939--15645150	30	7.1	30	80	10	170	21	23	14	41	1.89
15644992--15645060	29	2.4	29	97	0	129	13	28	14	43	1.83
15646396--15646501	53	2.0	54	88	1	160	30	20	13	35	1.91
15649204--15649270	26	2.6	26	83	9	75	25	28	22	23	1.99
15653596--15653641	20	2.3	20	79	17	60	58	4	2	34	1.30
15659448--15659483	19	1.9	18	94	5	63	61	0	11	27	1.30
15661241--15661288	20	2.4	20	96	0	87	50	0	27	22	1.50
15664717--15664985	136	2.0	136	88	2	398	34	17	24	23	1.96
15675991--15676220	114	2.0	115	99	0	453	45	3	6	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15677369--15677415	23	2.0	24	95	4	87	76	4	17	2	1.04
15682960--15683021	21	2.9	21	83	4	79	29	27	19	24	1.98
15682960--15683015	22	2.6	22	85	2	69	28	26	21	23	1.99
15685886--15685916	16	1.9	16	93	0	53	9	22	22	45	1.81
15694511--15694550	21	1.9	21	85	10	55	55	0	5	40	1.22
15713106--15713149	20	2.3	19	80	7	52	38	6	13	40	1.71
15714142--15714190	20	2.5	20	90	6	73	48	0	28	22	1.50
15715397--15715457	30	2.0	30	93	0	104	22	6	18	52	1.68
15723792--15723857	26	2.5	26	90	0	96	19	21	28	30	1.98
15742957--15743152	50	3.9	50	73	7	173	28	17	23	29	1.97
15742957--15743138	101	1.8	101	86	0	265	28	18	23	29	1.97
15753905--15753952	20	2.4	20	89	0	69	37	10	2	50	1.49
15753918--15753955	20	1.9	20	100	0	76	36	15	2	44	1.61
15754974--15755017	21	2.1	21	100	0	88	54	0	18	27	1.44
15759138--15759185	20	2.4	20	89	0	69	37	10	2	50	1.49
15759151--15759188	20	1.9	20	100	0	76	36	15	2	44	1.61
15760687--15761239	276	2.0	277	99	0	1099	26	13	18	41	1.87
15762299--15762342	21	2.1	21	87	8	63	36	15	18	29	1.92
15764642--15764795	27	5.7	27	88	4	186	18	16	22	42	1.88
15764654--15764795	53	2.7	53	93	1	230	17	16	20	45	1.86
15767497--15767560	26	2.5	26	81	0	65	40	20	4	34	1.73
15778378--15778443	21	3.0	21	69	18	53	71	4	3	21	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15784471--15784517	24	2.0	24	86	0	67	29	23	21	25	1.99
15797686--15797729	19	2.3	20	84	7	56	27	20	11	40	1.86
15799809--15799833	9	2.8	9	100	0	50	84	8	0	8	0.79
15799794--15799839	11	4.3	11	76	15	51	80	8	4	6	1.01
15799862--15799898	6	5.8	6	87	12	56	81	0	18	0	0.70
15799862--15799903	20	2.1	20	91	8	68	78	0	19	2	0.86
15801999--15802644	44	14.9	43	71	11	340	30	19	21	28	1.98
15801928--15803055	175	6.6	174	87	5	1497	30	20	21	27	1.98
15802490--15802987	176	3.0	164	88	6	675	32	20	21	25	1.98
15802679--15803087	44	9.3	43	70	10	195	30	20	20	28	1.98
15802651--15803055	176	2.3	175	92	1	659	30	20	21	27	1.98
15801928--15803084	512	2.3	514	88	3	1728	30	20	21	27	1.98
15812915--15812975	31	2.0	31	100	0	122	42	18	9	29	1.82
15818327--15818370	2	22.0	2	86	9	63	52	2	0	45	1.13
15824737--15824788	19	2.7	20	76	8	54	51	9	3	34	1.53
15826762--15826822	25	2.5	24	77	17	63	40	1	3	54	1.27
15830150--15830339	68	2.8	69	79	6	192	35	17	6	40	1.76
15831226--15831265	22	1.9	21	85	10	55	27	50	2	20	1.61
15846448--15846492	17	2.6	17	89	0	63	60	15	0	24	1.36
15860197--15860240	18	2.4	18	88	3	61	34	18	20	27	1.96
15866959--15866990	15	2.1	15	94	0	55	68	9	6	15	1.36
15869166--15869198	16	2.1	16	94	0	57	33	6	36	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15869178--15869267	45	2.0	44	87	6	128	31	5	28	34	1.80
15869412--15869453	15	2.7	16	82	14	52	52	2	0	45	1.13
15869421--15869462	15	2.9	15	82	10	52	52	0	0	47	1.00
15872679--15872788	41	2.7	41	92	0	175	30	11	21	36	1.90
15876520--15876580	28	2.2	28	100	0	122	39	9	19	31	1.84
15879123--15879160	20	1.9	20	88	0	58	39	28	18	13	1.88
15883230--15883557	42	7.9	42	82	3	360	29	19	19	31	1.97
15883290--15883560	84	3.2	84	89	2	402	29	17	20	31	1.96
15891475--15891746	42	6.5	42	85	0	321	31	18	18	30	1.95
15891512--15891751	84	2.9	84	92	0	390	32	17	18	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210