genome.fa.s3.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  89  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30828973--30829010	13	2.8	13	81	18	51	13	0	47	39	1.42
30828921--30829064	74	1.9	76	85	2	202	28	1	26	43	1.63
30829052--30829076	7	3.6	7	100	0	50	16	0	52	32	1.44
30828853--30829797	199	4.7	199	100	0	1890	28	2	28	40	1.68
30829172--30829209	13	2.8	13	81	18	51	13	0	47	39	1.42
30829120--30829263	74	1.9	76	85	2	202	28	1	26	43	1.63
30829251--30829275	7	3.6	7	100	0	50	16	0	52	32	1.44
30829371--30829408	13	2.8	13	81	18	51	13	0	47	39	1.42
30829319--30829462	74	1.9	76	85	2	202	28	1	26	43	1.63
30829450--30829474	7	3.6	7	100	0	50	16	0	52	32	1.44
30829570--30829607	13	2.8	13	81	18	51	13	0	47	39	1.42
30829518--30829661	74	1.9	76	85	2	202	28	1	26	43	1.63
30829649--30829673	7	3.6	7	100	0	50	16	0	52	32	1.44
30833680--30833727	22	2.0	23	84	11	62	54	2	2	41	1.24
30833772--30833999	43	5.3	43	86	2	289	23	16	30	28	1.96
30833752--30833999	129	1.9	128	84	4	329	22	16	30	30	1.96
30834041--30834083	22	2.0	22	95	0	77	41	27	20	9	1.83
30834764--30834798	6	5.8	6	100	0	70	51	14	0	34	1.42
30834757--30834796	18	2.2	18	90	0	62	50	17	0	32	1.47
30835480--30835585	41	2.6	41	86	0	122	33	22	18	24	1.97
30835510--30835612	41	2.5	41	91	0	161	33	23	16	26	1.95
30835510--30835627	41	2.9	41	87	0	110	33	23	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30837498--30837546	20	2.5	20	90	6	75	34	12	16	36	1.86
30842738--30842797	20	2.9	21	65	22	54	23	31	16	28	1.96
30842738--30842820	41	2.0	41	86	4	114	20	30	16	32	1.95
30849465--30849664	103	1.9	103	88	2	303	19	27	18	35	1.95
30860056--30860195	41	3.4	41	88	2	185	40	11	23	25	1.88
30862491--30862525	18	1.9	18	94	0	61	45	14	11	28	1.79
30869021--30869069	6	7.7	6	82	13	62	83	12	2	2	0.82
30869016--30869077	27	2.3	26	91	8	99	82	9	1	6	0.91
30869021--30869063	21	2.1	20	91	4	68	83	11	2	2	0.83
30871955--30871984	14	2.1	14	93	0	51	83	0	0	16	0.65
30873773--30873958	93	2.0	93	90	0	291	33	23	13	29	1.93
30873929--30874550	27	23.0	27	83	0	679	19	17	20	41	1.90
30879530--30879664	68	2.0	69	83	1	173	50	5	5	38	1.49
30881275--30881306	15	2.1	15	94	0	55	68	9	6	15	1.36
30887889--30887919	15	2.1	15	93	0	53	35	3	0	61	1.12
30890238--30890312	25	3.0	25	88	0	114	20	28	14	37	1.92
30890238--30890343	50	2.1	49	82	1	122	24	25	15	34	1.94
30897487--30897580	25	3.7	25	81	4	91	20	27	12	39	1.89
30897474--30897580	50	2.1	50	86	3	144	20	27	14	38	1.91
30906002--30906106	40	2.6	40	93	1	183	20	19	24	35	1.96
30909106--30909144	18	2.2	18	90	9	62	20	15	5	58	1.55
30909818--30910440	130	4.8	130	85	2	747	31	16	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30916700--30916736	19	1.9	19	94	0	65	24	5	0	70	1.08
30923272--30923345	38	1.9	38	91	0	121	45	14	5	33	1.68
30925365--30925399	17	2.1	17	100	0	70	42	5	17	34	1.73
30926439--30926465	12	2.2	12	100	0	54	62	11	0	25	1.28
30928724--30928883	21	7.6	21	74	8	128	45	16	21	17	1.86
30928727--30928883	42	3.7	42	78	9	160	45	15	21	17	1.86
30933655--30933689	18	2.0	17	88	5	52	22	0	5	71	1.07
30936165--30936208	23	1.9	24	90	9	74	54	0	20	25	1.45
30937627--30937678	19	2.8	18	78	13	61	34	0	0	65	0.93
30941425--30941462	18	2.1	18	85	9	51	36	2	0	60	1.11
30947306--30947366	26	2.3	26	80	5	70	31	4	3	60	1.34
30947305--30947367	27	2.4	25	77	12	65	33	4	3	58	1.35
30947348--30947656	96	3.2	96	100	0	618	30	17	4	47	1.68
30949372--30949423	18	2.9	17	80	13	52	67	3	0	28	1.08
30950460--30950521	21	3.1	18	72	19	52	41	1	4	51	1.33
30950460--30950561	41	2.5	41	81	16	106	42	3	3	50	1.39
30950542--30950811	134	2.0	135	99	0	533	34	13	10	41	1.78
30951739--30951783	20	2.2	20	88	7	65	28	0	2	68	1.01
30952225--30952252	5	5.6	5	100	0	56	60	21	17	0	1.36
30952692--30952724	17	1.9	17	100	0	66	36	18	9	36	1.82
30953686--30953720	17	2.0	17	88	5	52	65	2	0	31	1.07
30953695--30953727	17	2.0	17	88	5	50	63	3	0	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30954240--30954615	124	3.0	125	88	1	533	30	15	22	31	1.95
30956302--30956507	21	9.4	22	83	10	226	24	0	29	45	1.57
30956302--30956643	44	8.0	43	79	12	296	25	0	28	45	1.56
30956302--30956640	23	14.8	23	75	15	240	25	0	27	46	1.56
30956428--30956585	78	2.0	78	96	0	289	24	0	27	47	1.52
30956671--30956707	9	4.2	9	96	3	67	59	10	0	29	1.31
30956710--30956967	25	10.9	25	70	16	201	46	13	0	39	1.43
30956704--30956977	70	3.9	70	100	0	548	48	12	0	39	1.42
30957397--30957436	18	2.2	18	95	0	71	40	7	30	22	1.81
30958952--30958993	12	3.5	12	83	0	57	61	0	7	30	1.22
30959061--30959100	11	3.6	11	93	6	64	42	0	35	22	1.54
30967401--30967434	17	1.9	18	94	5	61	55	26	0	17	1.42
30970057--30970094	19	2.0	19	94	0	67	39	13	0	47	1.42
30974243--30974302	30	2.0	29	93	3	102	38	18	15	28	1.91
30988342--30988392	26	1.9	26	88	4	75	13	9	3	72	1.24
30992361--30992385	2	12.5	2	100	0	50	48	0	0	52	1.00
30997721--30997788	18	3.9	17	72	16	59	64	2	1	30	1.17
30997720--30997761	9	4.7	9	80	8	50	59	2	0	38	1.10
30997720--30997796	19	4.4	17	69	18	59	63	2	1	32	1.16
30997703--30997805	27	3.8	26	71	18	86	64	1	1	32	1.16
30999372--30999613	50	4.7	51	75	9	181	28	20	27	23	1.99
31012875--31012905	16	1.9	16	93	0	53	45	0	29	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31013233--31013287	9	6.1	9	84	0	74	30	9	12	47	1.73
31013233--31013287	18	3.1	18	91	0	83	30	9	12	47	1.73
31013439--31013501	24	2.6	24	76	0	72	49	22	11	17	1.78
31013508--31013580	30	2.5	29	80	6	85	38	26	13	21	1.91
31016242--31016308	9	7.4	9	86	0	80	25	7	25	41	1.81
31016242--31016309	18	3.8	18	84	7	93	25	7	25	42	1.80
31021875--31021922	25	1.9	25	91	0	78	33	6	25	35	1.81
31027148--31027172	2	12.5	2	100	0	50	52	48	0	0	1.00
31028420--31028513	20	4.9	19	69	20	61	60	4	1	34	1.23
31029230--31029277	10	4.8	10	82	7	53	37	2	0	60	1.09
31030284--31030341	19	2.9	19	85	10	64	53	6	0	39	1.28
31038212--31038258	7	6.7	7	100	0	94	29	42	14	12	1.83
31038255--31038310	18	3.0	19	78	5	69	46	33	0	19	1.50
31038282--31038437	78	2.0	78	100	0	312	39	26	5	28	1.77
31042977--31043010	16	2.1	16	88	0	50	8	11	5	73	1.24
31043330--31043380	22	2.3	22	89	3	75	39	29	1	29	1.68
31049486--31049595	12	8.9	12	67	16	55	50	9	15	24	1.72
31049563--31049612	14	3.6	14	81	5	57	60	10	14	16	1.59
31049476--31049606	12	10.2	13	66	20	53	52	9	14	23	1.70
31057804--31057853	14	3.6	14	84	15	68	54	6	8	32	1.54
31057808--31057953	13	11.5	12	69	20	66	53	8	11	26	1.65
31057912--31057967	27	2.1	27	83	6	69	58	8	12	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31060367--31060401	18	1.9	18	88	0	52	60	8	8	22	1.54
31066573--31066631	26	2.3	26	85	2	75	32	16	6	44	1.74
31066795--31066830	6	6.0	6	93	0	63	16	19	0	63	1.30
31070880--31070907	14	2.0	14	100	0	56	35	14	21	28	1.92
31075429--31075461	15	2.2	15	89	10	50	54	0	0	45	0.99
31076368--31076444	14	5.0	15	71	20	52	42	14	9	33	1.77
31076384--31076423	20	2.0	20	90	0	62	50	12	10	27	1.72
31076372--31076438	34	1.9	35	90	3	109	46	13	8	31	1.74
31077942--31077989	18	2.7	18	83	6	53	20	0	8	70	1.12
31079137--31079165	13	2.1	14	93	6	51	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210