genome.fa.s3.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  96  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33072142--33072187	20	2.3	20	84	0	56	47	8	6	36	1.60
33074837--33074976	73	1.9	73	82	2	174	31	20	27	20	1.97
33074963--33075012	26	1.9	26	87	0	73	40	20	20	20	1.92
33082487--33082546	24	2.5	25	78	8	79	36	23	21	18	1.95
33082537--33082672	25	5.5	25	72	10	84	34	18	25	21	1.96
33084579--33084677	28	3.5	28	90	0	144	34	13	25	27	1.93
33085377--33085492	23	5.0	23	70	14	67	27	16	18	37	1.92
33085375--33085522	46	3.2	45	80	6	161	28	16	18	37	1.92
33087233--33087261	3	9.7	3	100	0	58	31	0	0	68	0.89
33087478--33087502	12	2.1	12	100	0	50	24	8	0	68	1.16
33109369--33109420	12	4.4	11	80	11	50	69	5	1	23	1.20
33115835--33115899	25	2.6	25	85	2	78	21	29	15	33	1.94
33122793--33122857	25	2.6	25	83	7	80	24	27	15	32	1.95
33128425--33128480	29	1.9	29	89	7	87	50	7	1	41	1.40
33128425--33128468	14	3.1	14	76	3	52	50	4	0	45	1.22
33130546--33130588	20	2.2	20	86	0	59	27	0	6	65	1.18
33135598--33135627	11	2.7	11	94	0	51	6	0	13	80	0.91
33140342--33140436	39	2.4	40	82	7	113	37	21	22	18	1.94
33140458--33140583	66	1.9	65	82	3	155	22	18	24	34	1.96
33140549--33140703	41	3.8	41	90	5	215	18	21	30	29	1.97
33143380--33143407	2	14.0	2	100	0	56	50	0	0	50	1.00
33147270--33147460	43	4.5	42	82	7	206	26	17	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33147294--33147476	86	2.1	87	85	6	239	25	17	29	27	1.97
33151801--33151852	19	2.7	20	85	11	65	38	7	23	30	1.83
33165561--33165596	18	2.0	18	88	0	54	41	11	5	41	1.64
33173389--33173445	26	2.3	25	80	14	64	42	21	22	14	1.88
33177805--33177839	15	2.2	16	90	5	54	34	20	8	37	1.83
33178839--33178990	26	6.0	26	71	8	109	17	25	22	35	1.95
33178854--33178995	25	5.6	25	72	13	105	17	24	21	35	1.95
33179056--33179110	25	2.2	25	83	0	74	21	21	20	36	1.95
33181379--33181453	30	2.5	30	88	0	105	30	22	25	21	1.99
33181565--33181665	26	3.9	26	83	6	143	37	20	22	18	1.94
33181591--33181691	52	1.9	52	80	4	114	35	20	22	20	1.96
33181857--33182056	27	7.4	28	87	4	171	20	18	21	41	1.91
33181847--33182056	54	3.9	54	84	2	244	20	17	21	40	1.92
33181861--33182045	81	2.3	81	84	3	246	20	17	21	41	1.91
33181847--33182056	81	2.6	79	81	6	240	20	17	21	40	1.92
33184762--33184799	19	2.0	19	100	0	76	36	21	10	31	1.87
33186075--33186211	42	3.1	46	76	14	142	29	32	18	19	1.96
33186121--33186215	42	2.2	43	90	1	147	32	32	17	16	1.93
33187618--33187642	10	2.5	10	100	0	50	44	20	8	28	1.79
33187584--33187687	45	2.3	44	85	11	131	42	18	6	32	1.76
33187587--33187667	19	4.9	18	68	28	65	44	18	6	30	1.74
33189793--33189843	22	2.4	21	80	6	57	45	39	0	15	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33189823--33189876	27	2.0	27	82	7	65	50	31	0	18	1.48
33189982--33190022	20	2.0	20	85	0	55	46	31	4	17	1.69
33192408--33192477	28	2.4	29	79	9	81	35	11	20	32	1.88
33192401--33192474	29	2.6	29	78	8	80	33	9	21	35	1.86
33193790--33193968	98	1.8	98	90	0	286	37	15	10	37	1.81
33194409--33194446	19	2.1	19	90	5	60	28	0	2	68	1.03
33196679--33196703	2	12.5	2	100	0	50	52	0	0	48	1.00
33199429--33199460	7	4.7	7	96	3	57	71	0	0	28	0.86
33201693--33201754	27	2.3	27	78	10	65	40	1	6	51	1.37
33204365--33204410	22	2.1	22	88	8	67	34	4	15	45	1.66
33209239--33210006	27	28.6	27	83	2	774	41	17	17	23	1.90
33209239--33210006	54	14.3	54	84	3	866	41	17	17	23	1.90
33210247--33210349	26	4.0	26	84	5	136	17	23	23	35	1.95
33210470--33210534	28	2.2	29	86	5	87	23	24	23	29	1.99
33210470--33210572	30	3.5	28	81	2	98	22	28	23	26	1.99
33213980--33214022	21	2.0	21	82	8	52	62	13	4	18	1.48
33215646--33215843	44	4.6	44	80	8	172	26	21	22	29	1.99
33215682--33215838	85	1.8	85	84	2	217	28	22	21	28	1.99
33215891--33216451	50	11.3	50	68	5	285	26	21	21	30	1.99
33215859--33216449	199	3.0	198	85	3	751	26	21	21	29	1.99
33215859--33216451	99	6.0	99	81	6	646	26	21	21	30	1.99
33216472--33216742	90	3.0	90	90	0	416	29	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33216515--33216742	45	5.1	45	84	8	329	29	26	16	27	1.97
33217663--33217703	15	2.6	16	85	14	59	0	14	7	78	0.96
33217655--33217702	20	2.4	20	83	10	62	0	12	6	81	0.87
33218136--33218213	1	78.0	1	71	0	57	3	2	7	85	0.79
33218135--33218213	8	10.0	8	76	13	74	3	2	8	84	0.82
33218147--33218213	21	3.3	20	83	6	75	4	2	7	85	0.83
33229194--33229247	15	3.6	15	100	0	108	12	20	22	44	1.85
33231332--33231413	41	2.0	41	100	0	164	34	7	14	43	1.73
33231560--33231707	41	3.6	40	82	7	138	29	20	29	20	1.98
33239512--33239661	41	3.7	40	82	11	171	27	21	27	24	1.99
33239826--33239927	48	2.1	48	85	3	134	36	6	17	39	1.77
33241639--33241703	30	2.2	30	83	5	78	23	7	21	47	1.76
33242900--33242948	25	2.0	25	87	0	71	34	20	16	28	1.94
33253221--33253322	42	2.4	42	88	3	143	10	29	20	39	1.86
33253080--33253749	165	4.1	165	99	0	1313	12	27	19	40	1.87
33253386--33253487	42	2.4	42	88	3	143	10	29	20	39	1.86
33253551--33253652	42	2.4	42	88	3	143	10	29	20	39	1.86
33258275--33258318	20	2.1	21	84	12	56	34	0	0	65	0.93
33264500--33264546	9	5.3	9	89	5	60	40	27	8	23	1.83
33264500--33264544	17	2.6	17	85	3	54	40	28	8	22	1.84
33275683--33275725	20	2.2	20	83	8	52	41	46	4	6	1.51
33276784--33276868	3	29.0	3	75	13	79	30	5	0	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33276782--33276869	28	3.1	27	80	13	90	31	5	0	62	1.18
33276797--33276868	31	2.3	32	85	7	94	30	4	0	65	1.12
33280333--33280369	17	2.2	17	90	9	58	78	0	18	2	0.87
33281653--33282592	100	9.4	100	86	1	1213	32	22	21	24	1.98
33282601--33283126	100	5.3	100	86	0	676	33	22	19	23	1.97
33283137--33283375	44	5.6	42	75	8	187	28	23	22	26	1.99
33283123--33283373	129	1.9	129	95	0	457	29	23	21	25	1.99
33283668--33283710	20	2.2	20	83	8	52	39	46	6	6	1.58
33284721--33284795	3	25.7	3	79	15	86	34	2	0	62	1.09
33287088--33287115	2	14.0	2	100	0	56	50	0	0	50	1.00
33289542--33289579	11	3.5	11	86	13	60	39	0	10	50	1.37
33289546--33289579	10	3.2	10	84	15	50	35	0	11	52	1.38
33310249--33310291	22	1.9	23	85	4	61	34	18	11	34	1.87
33310873--33310902	14	2.1	14	93	0	51	46	10	6	36	1.64
33313219--33313258	20	2.0	20	85	0	53	52	12	10	25	1.70
33313242--33313281	14	2.9	14	84	0	53	42	17	7	32	1.77
33313207--33313273	34	1.9	35	87	3	100	47	13	8	29	1.73
33317223--33317265	21	2.0	21	91	8	70	39	0	0	60	0.97
33328302--33328371	22	3.0	22	71	17	59	44	5	1	48	1.35
33328300--33328378	26	3.2	25	70	18	67	43	7	1	48	1.39
33332201--33332241	21	2.0	21	85	4	57	4	7	17	70	1.28
33339727--33339755	14	2.0	15	93	6	51	89	10	0	0	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33345100--33345146	22	2.1	22	100	0	94	57	12	8	21	1.62
33346923--33346961	20	2.0	20	85	10	53	79	10	0	10	0.94
33346923--33346962	21	2.0	20	85	5	53	80	10	0	10	0.92
33357846--33357971	39	3.3	38	87	3	155	53	4	2	39	1.35
33357864--33357971	39	2.8	39	91	4	166	53	3	2	39	1.33
33361337--33361420	15	5.7	15	85	5	127	45	36	0	17	1.49
33361337--33361420	7	11.6	7	87	7	114	45	36	0	17	1.49
33361337--33361414	22	3.5	22	85	0	111	46	35	0	17	1.49
33361337--33361420	29	2.9	29	89	5	125	45	36	0	17	1.49
33362762--33362798	3	12.3	3	100	0	74	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210