genome.fa.s3.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  176  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58485738--58485794	15	3.9	15	77	11	55	35	45	0	19	1.50
58485738--58485771	8	4.6	7	86	13	50	32	50	0	17	1.47
58485312--58486478	298	4.0	295	85	6	1537	42	27	2	28	1.66
58486003--58486031	8	3.8	8	90	9	51	37	41	0	20	1.53
58486003--58486045	15	2.9	15	86	6	61	34	39	0	25	1.56
58486003--58486046	14	3.1	14	90	3	61	34	40	0	25	1.56
58486014--58486108	21	4.5	20	75	9	64	36	33	1	28	1.64
58486078--58486123	14	3.3	14	87	0	65	41	32	0	26	1.56
58486323--58486391	21	3.2	22	85	8	97	39	40	0	20	1.52
58485312--58486478	585	2.0	573	87	7	1665	42	27	2	28	1.66
58486755--58486951	41	4.8	41	91	2	299	28	34	18	18	1.94
58487882--58488056	87	2.0	88	98	1	343	37	3	5	53	1.42
58492004--58492171	45	3.7	45	81	0	192	31	16	18	33	1.93
58491990--58492208	90	2.4	90	81	0	249	32	16	17	32	1.93
58495887--58495921	16	2.1	17	89	5	54	37	0	51	11	1.38
58499768--58499805	20	1.9	20	89	10	60	57	5	0	36	1.21
58506435--58506472	16	2.5	15	87	8	51	34	0	55	10	1.34
58507492--58507524	17	1.9	17	93	0	57	57	15	12	15	1.65
58507512--58507641	43	3.1	42	69	14	117	46	18	13	21	1.84
58507529--58507649	38	3.0	39	66	15	93	46	16	14	23	1.83
58507477--58507649	81	2.1	81	90	2	267	46	17	13	21	1.82
58512468--58512660	50	3.7	50	81	8	192	26	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58512474--58512660	100	1.8	104	81	6	238	26	20	29	22	1.99
58512463--58512709	50	4.8	50	80	5	176	27	21	27	22	1.99
58515313--58515369	23	2.5	23	88	0	78	38	24	8	28	1.85
58522314--58522499	50	3.6	50	81	5	178	26	20	29	23	1.99
58522364--58522499	49	2.8	49	82	3	157	26	24	27	21	1.99
58525963--58526005	21	2.0	21	100	0	86	27	23	18	30	1.98
58526753--58526792	21	1.9	21	84	0	53	15	10	32	42	1.79
58528079--58528112	17	2.1	16	88	5	50	76	14	0	8	1.01
58529357--58529639	50	5.7	51	77	11	232	28	21	27	22	1.99
58529410--58529646	50	4.9	50	77	8	240	27	21	28	21	1.99
58531157--58531210	27	2.0	27	100	0	108	48	18	3	29	1.65
58534140--58534194	20	2.8	20	88	0	83	30	25	10	32	1.90
58536079--58536217	68	2.0	68	95	0	251	48	8	25	17	1.75
58538724--58538816	47	2.0	46	97	2	177	27	26	12	32	1.93
58540234--58540359	56	2.2	56	87	4	182	23	28	9	38	1.86
58541412--58541485	36	2.1	36	81	0	85	41	14	18	24	1.89
58562614--58562862	27	9.2	27	88	5	342	43	21	19	15	1.88
58563220--58563315	28	3.4	28	88	8	140	25	23	22	28	2.00
58565847--58565904	20	2.9	20	75	10	64	36	17	29	17	1.92
58565827--58565925	40	2.5	40	86	3	137	33	15	29	22	1.94
58566774--58566813	12	3.3	12	82	0	53	15	22	2	60	1.47
58567743--58567801	14	4.0	15	74	12	59	3	22	1	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58567793--58567838	18	2.6	17	80	10	56	8	2	6	82	0.91
58569347--58569393	20	2.3	20	85	7	60	25	17	29	27	1.97
58587005--58587080	28	2.8	28	84	9	86	50	11	7	30	1.68
58587231--58587329	35	3.0	34	78	11	125	23	17	24	35	1.95
58601336--58601364	12	2.5	12	94	5	51	41	20	0	37	1.53
58601480--58601507	12	2.3	12	100	0	56	35	32	25	7	1.83
58602668--58603470	243	3.3	243	93	1	1281	24	24	11	39	1.88
58606344--58606382	19	2.0	20	90	5	62	25	28	10	35	1.89
58606346--58606391	20	2.3	19	85	7	56	28	30	10	30	1.91
58608792--58608889	6	16.0	6	66	19	51	74	1	18	6	1.08
58608817--58608888	13	5.7	13	77	20	57	73	1	16	8	1.14
58608810--58608888	38	2.1	38	85	4	106	73	1	17	7	1.13
58608814--58608897	39	2.2	39	82	4	98	73	2	16	7	1.15
58617131--58617158	10	2.8	10	100	0	56	17	0	42	39	1.50
58620444--58620590	27	5.5	26	77	14	149	31	16	24	27	1.96
58620400--58620612	53	4.0	53	76	7	189	31	17	23	27	1.97
58621684--58621924	27	8.9	27	96	0	410	25	21	13	39	1.90
58622237--58622288	25	2.1	25	100	0	104	38	25	0	36	1.56
58622965--58623004	21	1.9	21	90	10	64	30	5	27	37	1.78
58624677--58624791	27	4.3	27	78	0	104	31	14	22	31	1.94
58625964--58625997	16	2.2	16	89	5	52	50	11	8	29	1.69
58633458--58633495	18	2.1	19	90	5	60	5	15	2	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58641208--58641267	28	2.2	28	87	3	86	55	15	5	25	1.60
58648090--58648255	82	2.0	83	98	1	325	35	20	14	29	1.92
58652183--58652266	23	3.7	23	83	0	105	16	17	29	35	1.93
58659001--58659026	9	2.9	9	100	0	52	11	0	0	88	0.52
58659394--58659962	52	10.9	52	99	0	1093	25	17	23	34	1.96
58669168--58669248	40	2.0	40	100	0	162	45	19	17	17	1.85
58677866--58677924	25	2.3	26	77	5	68	59	5	5	30	1.41
58678427--58678526	3	33.0	3	79	9	96	60	2	6	32	1.32
58680089--58680335	44	5.7	43	71	11	164	27	21	20	31	1.98
58680057--58680289	85	2.7	87	75	9	233	29	20	18	30	1.97
58681284--58681734	172	2.6	171	90	2	650	27	20	20	31	1.97
58681455--58681563	43	2.5	43	78	8	114	30	19	19	31	1.96
58681489--58681734	44	5.7	44	71	12	168	25	21	21	31	1.98
58690987--58691037	25	2.0	25	88	0	75	11	25	21	41	1.87
58693573--58693690	3	39.0	3	82	8	132	61	1	5	32	1.28
58710786--58711107	85	3.8	84	86	2	398	34	25	16	23	1.95
58710786--58711107	84	3.8	84	86	3	400	34	25	16	23	1.95
58710786--58711105	169	1.9	167	86	2	453	35	25	16	22	1.95
58711083--58711133	26	2.0	26	92	0	84	29	29	19	21	1.98
58718443--58718743	85	3.6	84	80	4	318	33	23	17	25	1.96
58718485--58718719	43	5.5	42	71	12	147	34	23	17	23	1.96
58723318--58723368	15	3.0	17	76	15	52	76	3	0	19	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58725632--58725775	28	5.2	28	77	2	123	27	31	11	29	1.91
58731753--58731785	17	1.9	17	100	0	66	45	12	6	36	1.66
58741105--58741156	24	2.2	24	96	0	95	26	38	5	28	1.79
58747944--58748071	28	4.6	28	80	0	132	26	31	13	28	1.94
58755737--58755768	7	4.6	7	100	0	64	31	0	12	56	1.37
58757434--58757471	3	12.7	3	100	0	76	68	0	0	31	0.90
58763345--58763386	22	2.0	21	85	4	57	50	0	4	45	1.23
58766355--58766413	27	2.2	27	100	0	118	15	32	22	30	1.94
58781735--58781774	2	21.5	2	80	14	50	50	0	0	50	1.00
58781774--58781798	2	12.5	2	100	0	50	52	0	48	0	1.00
58782133--58782198	29	2.3	29	100	0	132	24	9	6	60	1.49
58783185--58783220	12	2.8	12	91	8	54	30	0	0	69	0.89
58783168--58783229	31	2.0	31	84	6	81	30	1	0	67	1.00
58784734--58784776	18	2.4	18	88	0	59	23	23	9	44	1.82
58786083--58786157	9	8.4	9	75	19	77	66	0	0	33	0.92
58786083--58786157	17	4.8	16	75	17	77	66	0	0	33	0.92
58786090--58786160	37	1.9	36	86	8	99	63	0	0	36	0.95
58786096--58786151	29	1.9	29	89	7	87	62	0	0	37	0.95
58788188--58788213	5	5.2	5	100	0	52	19	0	0	80	0.71
58794665--58794690	11	2.4	11	100	0	52	34	23	30	11	1.90
58797050--58797139	42	2.2	41	80	7	94	18	27	28	24	1.98
58798326--58798392	30	2.2	29	79	7	71	26	32	11	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58804580--58804621	21	2.0	21	86	9	59	19	9	16	54	1.69
58812046--58812129	20	4.4	18	68	24	57	40	19	0	40	1.51
58812041--58812138	31	3.4	30	66	24	75	40	19	0	39	1.52
58812019--58812130	57	2.0	56	91	1	179	39	20	0	40	1.53
58812023--58812172	56	2.6	57	86	3	187	36	20	1	42	1.61
58812592--58812650	31	1.9	30	82	3	73	30	27	3	38	1.73
58815105--58815153	25	2.0	25	83	0	62	38	0	16	44	1.48
58815549--58815676	43	3.0	43	90	3	206	52	3	20	24	1.61
58817358--58817397	18	2.2	19	86	4	55	60	0	2	37	1.11
58818120--58818161	22	1.9	22	90	0	66	28	11	7	52	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210