Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  107  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36200966--36201715
153
4.9
151
80
11
850
52
6
10
31
1.61
36200948--36201716
304
2.5
307
90
4
1162
52
6
10
31
1.61
36206790--36206836
23
2.0
23
84
8
60
59
14
2
23
1.46
36207124--36207162
3
13.0
3
100
0
78
0
66
0
33
0.92
36209568--36209593
7
3.7
7
100
0
52
26
0
15
57
1.38
36210472--36210518
21
2.2
21
82
14
53
36
29
21
12
1.91
36217687--36218373
22
32.0
21
84
6
815
42
32
1
23
1.62
36217694--36218373
43
15.9
41
82
9
713
42
32
1
23
1.62
36217687--36218373
150
4.6
147
85
5
842
42
32
1
23
1.62
36221029--36221076
24
2.0
24
100
0
96
33
33
16
16
1.92
36221518--36222033
126
4.1
125
88
2
680
30
22
17
29
1.97
36221513--36222080
250
2.3
252
86
3
752
29
22
17
30
1.96
36226667--36226724
8
7.5
8
79
12
68
22
0
10
67
1.21
36226662--36226749
31
2.8
32
89
5
128
23
1
9
65
1.28
36226714--36226748
16
2.2
16
89
0
52
22
2
0
74
0.95
36229315--36229349
17
2.0
18
88
5
54
34
0
5
60
1.21
36229313--36229350
9
4.2
9
86
10
51
34
0
5
60
1.19
36231972--36231996
2
12.5
2
100
0
50
0
0
48
52
1.00
36232614--36232685
30
2.4
31
85
2
101
33
23
19
23
1.97
36245439--36245516
27
2.9
27
83
7
88
21
23
33
21
1.97
36248551--36248594
16
2.8
15
83
10
61
59
2
2
36
1.23
36248786--36248822
19
1.9
19
94
0
65
54
16
0
29
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36248950--36248979
4
7.8
4
92
7
53
0
23
0
76
0.78
36248975--36249020
3
16.3
3
84
13
62
0
36
0
63
0.95
36248982--36249032
8
6.5
8
84
10
52
0
39
0
60
0.97
36248979--36249029
17
3.2
16
86
8
77
0
39
0
60
0.97
36248967--36249021
25
2.2
25
90
6
85
0
36
0
63
0.95
36248967--36249018
22
2.5
21
84
9
79
0
34
0
65
0.93
36248973--36249032
17
3.6
17
76
14
72
0
38
0
61
0.96
36248955--36249032
17
4.1
20
76
23
64
0
34
0
65
0.93
36248973--36249032
25
2.4
24
83
8
84
0
38
0
61
0.96
36257046--36257071
5
5.2
5
100
0
52
23
19
19
38
1.93
36257378--36257419
21
2.0
21
95
0
75
19
35
28
16
1.93
36259671--36259819
24
6.1
24
76
9
97
30
23
25
20
1.98
36259717--36259785
25
2.8
24
88
4
93
33
21
24
20
1.97
36263806--36264058
126
2.0
126
100
0
506
34
17
12
35
1.88
36272828--36272875
16
2.9
16
75
19
53
22
14
4
58
1.54
36280715--36280781
26
2.6
26
76
9
73
22
22
22
32
1.98
36296490--36296551
31
2.0
32
84
9
83
33
14
6
45
1.71
36296830--36296867
17
2.2
18
85
4
51
55
13
0
31
1.38
36296877--36296927
6
9.2
6
83
10
56
56
0
0
43
0.99
36297227--36297260
6
5.7
6
96
0
59
50
2
0
47
1.16
36297471--36297570
29
3.4
29
76
9
96
43
12
19
26
1.85
36297489--36297582
31
3.1
29
78
13
109
51
10
17
21
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36297471--36297600
60
2.2
59
80
6
147
44
11
19
24
1.83
36307066--36307105
20
2.0
20
100
0
80
40
5
15
40
1.68
36307819--36307884
28
2.2
31
84
7
84
46
1
6
45
1.37
36312881--36313049
24
6.8
25
71
10
98
18
27
21
32
1.97
36315820--36315881
18
3.4
18
73
4
52
64
0
3
32
1.09
36315859--36315891
15
2.1
16
88
5
50
54
0
3
42
1.15
36319209--36319259
15
3.4
14
75
21
50
62
0
1
35
1.06
36321940--36322110
64
2.7
64
87
1
236
36
22
20
19
1.95
36323643--36323885
82
3.0
81
86
1
317
31
12
9
47
1.72
36327498--36327546
18
2.8
17
87
9
71
32
4
0
63
1.13
36327501--36327563
21
3.0
21
77
11
65
30
4
3
61
1.32
36327497--36327561
15
4.1
15
79
15
51
32
4
3
60
1.33
36327501--36327562
18
3.6
17
79
16
58
30
4
3
61
1.33
36327595--36327679
25
3.5
24
78
13
102
36
7
4
51
1.50
36327649--36327683
19
1.9
18
88
11
54
34
2
2
60
1.26
36327724--36327762
10
4.0
10
83
6
53
33
2
0
64
1.08
36328923--36328964
19
2.3
19
83
4
50
33
0
0
66
0.92
36334282--36334306
2
12.5
2
100
0
50
52
0
0
48
1.00
36334487--36334516
2
15.0
2
92
0
51
46
3
0
50
1.18
36340196--36340243
10
5.2
10
76
16
50
37
2
0
60
1.09
36340574--36340631
25
2.3
24
82
11
64
29
0
6
63
1.20
36341881--36341962
40
2.0
42
80
7
96
57
3
0
39
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36341905--36341962
21
2.7
22
76
15
66
63
1
0
34
1.04
36342759--36342811
13
3.9
14
77
22
51
33
0
0
66
0.92
36349046--36349110
2
33.0
2
93
3
114
50
47
0
1
1.10
36353936--36355838
951
2.0
951
99
0
3788
36
13
11
38
1.81
36355783--36357350
784
2.0
782
95
2
2862
40
12
7
39
1.72
36358006--36358244
119
2.0
119
98
1
462
44
13
7
34
1.72
36363519--36363552
9
3.8
9
88
0
50
29
0
2
67
1.05
36371045--36371107
20
3.3
20
66
20
62
49
11
4
34
1.59
36371045--36371122
37
2.1
37
97
0
147
50
8
5
35
1.56
36371057--36371120
20
3.3
20
63
20
55
48
7
4
39
1.53
36371499--36371553
28
1.9
29
85
3
76
45
5
0
49
1.25
36374785--36374911
60
2.1
60
83
2
157
37
16
8
37
1.80
36375091--36375225
61
2.2
60
85
6
175
32
11
20
34
1.89
36381076--36381106
16
2.0
16
93
6
55
80
6
0
12
0.89
36381828--36381888
32
1.9
32
83
3
79
31
9
11
47
1.72
36398174--36398215
22
1.9
22
85
0
57
28
26
26
19
1.98
36400614--36400690
19
4.1
19
86
0
100
40
9
12
37
1.76
36400614--36400707
38
2.8
32
76
17
100
40
9
12
37
1.76
36400615--36400689
38
2.0
38
91
0
123
41
9
10
38
1.72
36406669--36407724
44
24.0
44
93
0
1686
20
23
31
23
1.98
36408694--36408782
19
4.6
19
86
5
133
37
12
14
35
1.84
36408694--36408782
40
2.3
40
90
3
137
37
12
14
35
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36414818--36414842
7
3.6
7
100
0
50
68
0
0
32
0.90
36418046--36418088
21
2.0
23
86
9
63
65
2
0
32
1.06
36427825--36427858
6
5.7
6
85
0
50
14
2
2
79
0.97
36429017--36429534
97
5.3
97
63
20
288
46
5
5
42
1.49
36429115--36429150
17
2.1
17
90
10
56
50
0
0
50
1.00
36429311--36429346
17
2.1
17
90
10
56
50
0
0
50
1.00
36429027--36429533
196
2.6
196
100
0
1014
45
5
5
43
1.49
36430435--36430559
62
2.0
63
98
1
243
52
12
8
26
1.66
36439174--36439229
21
2.7
21
91
5
87
30
8
32
28
1.88
36448516--36448540
12
2.1
12
100
0
50
28
0
24
48
1.52
36453808--36453849
21
2.0
21
86
9
59
40
11
9
38
1.75
36456265--36456301
16
2.4
16
90
4
58
40
18
5
35
1.74
36456466--36456868
89
4.5
89
81
7
444
28
27
22
22
1.99
36456479--36456620
44
3.2
44
69
9
126
26
28
21
23
1.99
36456495--36456722
44
5.1
44
64
16
110
28
28
22
21
1.99
36456466--36456868
178
2.3
177
84
4
499
28
27
22
22
1.99
36456583--36456868
45
6.4
45
70
14
182
29
27
23
19
1.98
36457004--36457110
44
2.4
43
77
7
117
28
21
28
21
1.99
36457649--36457691
22
2.0
22
85
0
59
23
53
20
2
1.57
36461342--36461500
83
1.9
81
85
2
219
34
20
10
33
1.87
36462875--36462946
29
2.5
28
88
6
108
45
20
9
23
1.81
36465199--36465228
15
2.0
15
93
0
51
16
0
6
76
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36465199--36465245
17
2.9
17
84
6
53
25
0
4
70
1.05
36473404--36473435
2
16.0
2
100
0
64
50
0
0
50
1.00
36476988--36477024
2
18.5
2
100
0
74
48
0
0
51
1.00
36488668--36488727
31
1.9
31
100
0
120
33
36
13
16
1.88
36491574--36491756
94
2.0
90
86
7
255
43
8
18
28
1.80
36493180--36493221
19
2.0
21
86
13
61
52
4
4
38
1.44
36502003--36502626
45
13.9
45
84
1
723
31
16
21
30
1.95
36502729--36502838
44
2.5
44
86
0
148
30
20
23
26
1.98
36503393--36503437
23
2.0
23
86
4
65
37
6
17
37
1.76
36505162--36505292
61
2.2
58
82
6
156
51
3
0
43
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210