genome.fa.s3.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  193  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63857710--63864936	213	34.0	211	72	9	2235	19	30	30	19	1.97
63853781--63864998	128	88.0	126	72	8	4247	19	30	30	20	1.97
63864787--63864998	86	2.5	86	80	5	232	16	29	33	19	1.94
63868957--63869041	29	3.0	27	72	11	66	32	11	2	52	1.50
63871182--63871246	3	21.7	3	73	6	51	27	3	3	66	1.22
63872999--63873040	20	2.1	20	100	0	84	52	14	0	33	1.42
63877913--63877967	25	2.2	25	90	0	83	47	5	14	32	1.67
63878282--63878327	24	1.9	24	91	8	76	36	13	13	36	1.83
63888806--63888851	22	2.1	22	100	0	92	28	36	4	30	1.76
63895646--63895701	26	2.2	26	86	0	76	62	5	1	30	1.28
63897605--63897683	38	2.0	39	95	4	142	18	32	15	32	1.92
63901516--63901578	26	2.4	26	83	0	90	61	0	1	36	1.05
63901935--63902222	147	2.0	147	96	0	531	24	26	10	38	1.88
63916182--63916402	110	2.0	111	94	1	390	34	2	19	43	1.65
63917870--63918045	87	2.0	88	98	1	345	40	10	4	44	1.59
63918444--63918724	125	2.2	124	84	7	374	29	17	21	31	1.96
63926297--63926359	29	2.2	29	88	2	92	61	1	0	36	1.05
63926405--63926443	21	1.9	20	85	15	53	33	0	30	35	1.58
63926398--63926497	52	1.9	52	85	4	139	38	0	29	33	1.58
63926450--63926518	22	3.1	22	89	0	102	42	0	26	31	1.56
63933012--63933075	18	3.5	18	71	23	53	62	0	3	34	1.11
63933030--63933073	19	2.4	19	84	3	54	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63933000--63933319	158	2.0	159	98	1	624	49	5	6	39	1.50
63933170--63933233	18	3.5	18	71	23	53	62	0	3	34	1.11
63933188--63933231	19	2.4	19	84	3	54	59	0	2	38	1.10
63933548--63933677	64	2.0	64	95	0	233	39	12	26	21	1.89
63934102--63934158	16	3.5	16	81	9	71	73	0	3	22	0.98
63934090--63934160	17	4.1	17	72	22	58	73	1	2	22	1.05
63934124--63934264	70	2.0	71	98	1	275	68	4	8	18	1.32
63935758--63935807	26	1.9	26	84	8	66	32	16	10	42	1.81
63937009--63937042	17	2.0	17	88	0	50	38	8	0	52	1.33
63946513--63946592	36	2.2	36	88	0	124	13	12	38	35	1.83
63947560--63947613	19	2.8	19	97	0	99	37	9	16	37	1.81
63948061--63948128	12	5.9	11	73	14	57	26	5	2	64	1.30
63959401--63959461	28	2.2	28	100	0	122	34	8	3	54	1.47
63964802--63964862	30	2.0	30	100	0	122	26	9	6	57	1.55
63966490--63966514	12	2.1	12	100	0	50	20	8	0	72	1.10
63967767--63967804	20	1.9	20	100	0	76	36	7	21	34	1.82
63969286--63969334	5	9.4	5	86	4	62	20	2	0	77	0.87
63973633--63973676	21	2.1	21	83	8	54	25	9	2	63	1.35
63991317--63991357	19	2.2	19	90	0	64	34	4	14	46	1.66
63991801--63991846	24	1.9	24	100	0	92	56	17	8	17	1.65
63997595--63998440	423	2.0	423	99	0	1660	30	26	11	32	1.91
64000663--64000688	6	4.3	6	100	0	52	15	34	15	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64002053--64002119	35	1.9	35	87	0	98	58	10	2	28	1.46
64010672--64010729	28	2.1	28	93	0	98	27	17	17	37	1.92
64012861--64012899	20	2.0	20	89	0	60	48	7	5	38	1.54
64016679--64017637	479	2.0	479	99	0	1909	34	14	28	22	1.93
64022372--64022419	25	2.0	23	84	8	60	58	6	2	33	1.35
64023400--64023456	21	2.7	21	94	0	105	36	10	10	42	1.74
64023377--64023451	21	3.5	20	85	7	78	38	13	9	38	1.77
64023619--64023724	55	1.9	55	94	0	185	30	18	26	24	1.98
64024363--64024472	56	1.9	58	87	3	161	29	20	5	45	1.73
64032029--64032058	15	1.9	16	93	6	53	43	3	0	53	1.17
64032990--64033044	25	2.2	25	86	3	74	67	5	0	27	1.12
64033333--64033368	18	2.1	17	94	5	63	38	0	11	50	1.38
64044717--64044829	25	4.6	25	75	10	101	17	24	18	38	1.92
64046845--64046897	27	2.0	27	92	0	88	37	20	20	20	1.94
64056829--64056871	23	2.0	22	86	9	61	44	4	6	44	1.52
64063924--64064282	71	5.3	70	67	17	254	31	19	12	36	1.89
64063903--64064476	134	4.3	134	93	1	857	31	18	12	37	1.89
64065760--64066117	134	2.7	134	81	2	425	29	19	15	36	1.92
64066262--64066317	15	3.8	16	79	9	57	67	0	3	28	1.07
64066292--64066317	3	8.7	3	100	0	52	69	0	0	30	0.89
64073348--64073377	12	2.5	12	88	0	51	0	13	16	70	1.18
64076983--64077018	15	2.3	16	90	4	56	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64078050--64078084	18	1.9	18	88	0	52	62	11	2	22	1.41
64088375--64088562	50	3.8	50	83	0	232	21	31	20	27	1.98
64088577--64088675	44	2.2	44	94	1	171	24	20	12	43	1.85
64094654--64094683	14	2.1	14	93	0	51	50	13	6	30	1.67
64098564--64098602	2	19.5	2	100	0	78	0	51	0	48	1.00
64107965--64108018	22	2.6	21	82	8	58	40	7	1	50	1.41
64110727--64110778	19	2.7	19	81	0	59	53	3	3	38	1.37
64111138--64111212	38	2.0	37	84	7	98	48	0	4	48	1.20
64114619--64114682	26	2.5	26	89	2	103	23	15	26	34	1.95
64114593--64114696	25	4.1	24	75	13	75	24	13	27	34	1.93
64133404--64133467	33	1.9	33	96	0	119	14	15	18	51	1.76
64141337--64141362	7	3.7	7	100	0	52	30	0	0	69	0.89
64141903--64141938	19	1.9	19	94	5	65	61	11	13	13	1.58
64164039--64164064	12	2.2	12	100	0	52	50	15	7	26	1.71
64164925--64164949	11	2.3	11	100	0	50	40	0	0	60	0.97
64164964--64165099	46	3.1	46	63	18	126	33	16	3	46	1.65
64164931--64165102	85	2.0	86	98	1	337	34	13	3	47	1.60
64167337--64167431	49	1.9	49	89	4	147	43	8	22	26	1.81
64167519--64167625	52	2.0	53	89	5	164	40	11	19	28	1.86
64169669--64169712	20	2.2	20	88	4	63	6	22	6	63	1.43
64170585--64170728	78	1.8	78	84	0	198	34	25	15	24	1.94
64174749--64174852	49	2.1	49	94	0	181	31	7	10	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64177423--64177476	17	3.0	18	81	8	65	53	0	1	44	1.11
64178462--64178573	19	5.9	19	73	4	75	28	4	3	63	1.31
64178545--64178581	19	1.9	19	89	10	58	32	2	0	64	1.07
64179927--64180010	38	2.4	34	84	11	100	46	13	8	32	1.72
64182113--64182313	97	2.1	97	85	0	267	26	12	31	29	1.93
64183227--64183323	34	2.8	33	84	6	131	46	13	10	29	1.76
64183482--64183506	12	2.1	12	100	0	50	48	0	24	28	1.52
64186037--64186222	92	2.0	91	84	3	239	34	15	19	30	1.93
64188855--64188884	14	2.1	14	100	0	60	50	16	6	26	1.70
64188906--64188940	2	17.5	2	93	0	61	48	0	0	51	1.00
64190437--64190468	16	2.0	17	88	11	50	31	0	0	68	0.90
64190453--64190518	28	2.4	28	73	16	66	37	3	3	56	1.30
64200936--64201310	198	1.9	198	80	7	449	37	21	11	29	1.89
64212798--64212853	21	2.7	20	83	8	58	26	30	1	41	1.66
64212813--64212853	20	2.0	20	85	4	55	34	29	0	36	1.58
64216917--64216941	13	1.9	13	100	0	50	48	0	8	44	1.32
64220317--64220439	59	2.1	59	83	5	153	29	10	21	38	1.87
64223177--64223268	29	3.2	29	77	9	116	19	1	23	55	1.50
64225099--64225138	15	2.7	15	84	0	53	32	22	12	32	1.91
64226187--64226219	18	1.9	17	88	11	50	51	0	12	36	1.39
64227427--64227588	46	3.6	46	93	2	267	33	14	22	29	1.94
64227592--64227628	18	2.1	18	100	0	74	40	16	16	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64233077--64233126	24	2.1	24	82	14	59	64	4	4	28	1.30
64233642--64233671	6	5.0	6	95	0	51	33	46	16	3	1.64
64241030--64241096	3	22.3	3	100	0	134	67	0	0	32	0.91
64241237--64241261	7	3.6	7	100	0	50	44	0	0	56	0.99
64247862--64247917	29	1.9	29	92	0	94	55	7	1	35	1.38
64264458--64264605	73	2.0	74	98	1	289	48	5	1	44	1.34
64264507--64264570	16	3.9	17	78	8	71	50	4	0	45	1.22
64291243--64291320	39	2.0	39	89	0	120	43	10	10	35	1.73
64293473--64293529	3	19.0	3	100	0	114	66	0	0	33	0.92
64306450--64306511	30	2.0	32	87	6	92	22	6	3	67	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210