genome.fa.s15.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  100  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29228649--29228730	17	5.0	17	72	23	61	41	1	1	56	1.15
29229900--29229934	3	11.7	3	100	0	70	34	0	0	65	0.93
29230074--29230139	23	2.9	22	76	10	62	42	1	21	34	1.62
29230287--29230377	37	2.4	38	81	5	105	19	23	28	28	1.98
29230287--29230381	38	2.5	37	81	5	111	20	24	28	27	1.99
29233685--29233728	20	2.2	20	87	0	61	72	2	18	6	1.17
29237651--29237711	32	1.9	32	100	0	122	8	16	13	62	1.53
29238922--29238976	28	2.0	27	86	10	76	58	0	3	38	1.16
29241094--29241127	15	2.3	15	89	0	50	50	2	14	32	1.58
29245878--29245956	41	1.9	41	84	0	104	17	20	35	26	1.95
29245904--29245987	41	2.0	41	81	4	98	15	22	36	25	1.93
29249413--29251183	884	2.0	884	100	0	3542	30	20	11	36	1.89
29254100--29254152	27	2.0	27	92	0	88	30	20	20	28	1.98
29255873--29255907	17	2.1	17	89	5	54	31	22	2	42	1.68
29257281--29257310	15	2.0	15	93	0	51	30	13	16	40	1.87
29263265--29263396	44	3.0	44	88	0	210	32	19	9	38	1.83
29264223--29264276	2	27.0	2	100	0	108	0	50	0	50	1.00
29273452--29273554	27	3.7	28	81	16	117	61	2	0	35	1.11
29273451--29273554	10	11.2	10	69	21	57	61	2	0	35	1.11
29273450--29273564	27	4.2	28	78	15	100	61	2	0	35	1.10
29273450--29273554	9	11.4	9	71	23	53	60	2	0	36	1.11
29273568--29273612	21	2.1	21	83	0	54	64	4	4	26	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29273451--29273656	19	11.1	19	67	19	69	62	2	1	33	1.19
29274017--29274274	9	27.1	9	66	16	94	32	3	4	59	1.32
29274057--29274121	19	3.3	19	81	12	78	33	0	3	63	1.10
29274155--29274204	17	2.8	18	81	9	57	32	2	2	64	1.16
29274154--29274244	48	1.9	46	86	8	130	34	2	3	60	1.25
29282369--29282405	17	2.2	18	85	9	51	56	13	5	24	1.58
29285769--29285835	29	2.3	28	82	14	75	52	10	11	25	1.70
29285962--29286040	31	2.5	31	87	0	113	25	12	15	46	1.80
29297019--29297247	83	2.7	82	83	4	251	34	28	8	27	1.86
29297060--29297258	84	2.4	83	84	2	247	34	28	10	27	1.89
29298426--29298470	19	2.4	19	89	10	67	33	0	2	64	1.06
29298426--29298477	10	5.8	9	78	12	54	32	0	1	65	1.04
29298842--29299006	29	5.6	28	67	13	89	25	21	6	46	1.74
29298835--29299001	59	2.8	59	84	4	201	23	20	5	49	1.71
29298834--29299001	60	2.8	59	81	5	194	23	20	5	49	1.71
29311532--29311619	44	2.0	44	100	0	176	27	25	25	22	2.00
29313515--29313712	14	14.1	14	76	4	148	34	19	11	34	1.88
29313501--29313712	42	5.0	42	76	3	185	34	19	11	34	1.87
29325258--29325414	43	3.7	43	70	13	135	25	17	25	31	1.97
29327477--29327580	20	5.2	20	72	0	73	22	19	22	36	1.95
29327469--29327588	40	3.0	40	85	0	168	25	20	20	34	1.97
29332006--29332058	26	2.0	26	100	0	106	30	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29332142--29332205	28	2.3	28	84	10	78	34	7	21	35	1.83
29333006--29333039	11	3.2	11	87	4	52	35	0	0	64	0.94
29336849--29336974	59	2.1	59	80	8	141	37	7	13	42	1.72
29342073--29342123	26	2.0	25	84	3	66	43	1	7	47	1.43
29351403--29351445	22	1.9	22	90	4	68	20	0	4	74	1.00
29355643--29355729	45	1.9	45	85	0	120	40	1	12	45	1.50
29355790--29355835	24	1.9	24	90	0	74	45	13	26	15	1.82
29355920--29356070	21	7.2	21	64	1	79	18	18	15	47	1.84
29355932--29356072	42	3.4	42	85	0	174	17	19	16	46	1.85
29356007--29356089	42	2.0	42	85	0	112	19	21	16	42	1.89
29359089--29359138	18	2.6	19	87	9	66	4	20	2	74	1.08
29359095--29359138	19	2.4	17	82	14	52	4	18	2	75	1.09
29360754--29360809	30	1.9	28	82	13	69	60	10	14	14	1.58
29381670--29381704	17	2.0	17	88	5	52	57	2	5	34	1.37
29388072--29388202	67	2.0	67	93	0	226	22	17	32	27	1.96
29388590--29388720	67	2.0	67	93	0	226	22	17	32	27	1.96
29387733--29388767	518	2.0	518	99	0	2061	31	14	25	29	1.95
29401491--29402014	263	2.0	261	89	1	789	41	13	16	28	1.86
29406200--29406262	25	2.5	25	77	12	65	49	1	3	46	1.27
29407342--29407388	23	2.0	23	95	0	85	36	12	10	40	1.78
29416458--29416501	22	2.0	22	100	0	88	36	9	0	54	1.32
29417062--29417167	52	2.0	52	83	0	131	22	21	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29421458--29421558	16	6.3	16	89	0	157	40	5	32	20	1.77
29421703--29421789	19	4.6	20	72	20	53	58	0	0	41	0.98
29421713--29421745	11	3.0	11	91	8	50	57	0	0	42	0.98
29421690--29421802	21	5.1	21	69	21	79	54	0	0	43	1.12
29421736--29421826	29	3.2	28	69	16	71	51	3	0	45	1.17
29421703--29421831	56	2.3	57	81	9	156	53	3	0	43	1.16
29422122--29422283	77	2.1	77	97	0	306	40	11	7	40	1.69
29423566--29423601	5	7.2	5	90	0	54	2	61	36	0	1.11
29423620--29423652	17	1.9	17	100	0	66	36	0	0	63	0.95
29423633--29423677	22	2.0	24	86	8	67	44	0	2	53	1.13
29424256--29424317	31	2.0	31	100	0	124	48	22	6	22	1.73
29424974--29425002	15	1.9	15	100	0	58	62	0	27	10	1.28
29429498--29429568	22	3.2	20	79	15	63	74	4	19	1	1.06
29429516--29429568	11	5.0	10	80	8	61	73	5	20	0	1.03
29429526--29429587	28	2.2	29	85	8	83	72	4	20	1	1.12
29429894--29429972	40	2.0	40	87	0	113	25	16	24	34	1.95
29442494--29442786	40	7.3	40	71	7	202	36	27	16	19	1.93
29442511--29442798	80	3.6	79	81	5	344	37	27	16	19	1.93
29443985--29444027	15	2.9	14	83	13	50	41	4	20	32	1.73
29445862--29445936	24	3.1	24	90	0	114	18	33	22	25	1.97
29447603--29447683	24	3.4	24	85	0	108	17	29	23	29	1.97
29449049--29449074	11	2.4	11	100	0	52	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29449049--29449156	11	10.4	11	67	27	51	38	2	0	58	1.13
29449032--29449168	39	3.4	39	79	14	161	35	2	0	62	1.08
29449138--29449186	22	2.2	21	82	10	62	34	0	4	61	1.15
29454607--29454639	3	11.0	3	87	12	50	36	0	33	30	1.58
29455432--29455540	54	2.0	56	94	3	195	39	14	11	33	1.83
29455432--29455567	54	2.5	54	85	3	139	36	13	11	38	1.82
29458244--29458298	22	2.5	22	79	5	58	45	0	0	54	0.99
29463351--29463515	81	2.0	81	94	0	285	35	18	3	42	1.66
29465103--29465219	62	1.9	61	83	8	150	48	4	4	42	1.42
29472219--29472250	16	2.0	16	100	0	64	37	18	31	12	1.88
29480253--29480339	44	2.0	44	93	0	147	22	20	14	41	1.89
29482181--29482291	51	2.2	52	83	4	136	55	6	5	32	1.48
29482058--29482519	228	2.0	228	99	0	915	56	6	8	28	1.54
29482409--29482521	51	2.2	52	84	4	140	55	6	5	32	1.47
29482786--29482828	3	14.3	3	90	9	70	65	0	0	34	0.93
29482785--29482827	21	2.1	21	95	4	79	62	0	0	37	0.95
29482786--29482844	27	2.2	27	85	8	77	66	1	0	32	1.02
29483192--29483274	21	4.1	21	78	9	93	38	13	7	40	1.72
29483211--29483275	19	3.3	19	82	4	85	40	15	6	38	1.72
29488215--29488245	9	3.4	9	90	0	53	41	0	35	22	1.54
29488919--29488992	21	3.6	21	85	1	96	27	8	6	58	1.52
29489698--29489748	26	1.9	26	88	4	75	50	0	1	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29491374--29491407	17	2.0	17	94	0	59	35	8	11	44	1.72
29509189--29509278	36	2.5	34	86	10	126	52	1	7	38	1.38
29511321--29511496	87	2.0	87	82	2	210	28	24	18	28	1.98
29512928--29513059	65	2.0	65	85	8	180	12	18	15	53	1.72
29513908--29514014	30	3.7	29	81	14	87	10	8	3	77	1.10
29513942--29514015	15	5.0	15	82	12	82	13	2	5	78	1.03
29513919--29514014	23	4.2	23	77	12	74	11	6	4	78	1.08
29513952--29514011	24	2.3	26	83	16	81	13	1	6	78	1.02
29513949--29514015	30	2.2	30	92	5	109	11	1	5	80	0.95
29518392--29518460	33	2.1	33	97	0	129	62	5	7	24	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187