genome.fa.s15.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  166  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50357641--50357756	57	2.0	58	90	10	182	30	22	24	23	1.99
50362633--50362684	24	2.2	24	92	0	86	51	7	3	36	1.49
50364196--50364345	45	3.3	45	87	5	214	21	17	19	42	1.90
50364325--50364373	6	7.8	6	81	2	53	20	18	16	44	1.86
50366919--50366951	17	1.9	17	93	0	57	30	0	0	69	0.88
50379291--50379640	44	8.3	41	70	11	208	29	18	22	30	1.97
50379292--50379580	127	2.3	127	93	1	490	30	18	22	29	1.97
50380924--50380956	17	1.9	17	93	0	57	30	0	0	69	0.88
50387418--50387463	21	2.2	21	84	0	56	41	4	13	41	1.63
50397154--50397376	79	2.8	79	84	9	269	24	27	22	26	2.00
50397154--50397376	39	5.7	40	86	8	266	24	27	22	26	2.00
50398454--50398480	14	1.9	14	100	0	54	0	7	3	88	0.61
50398385--50398785	199	2.0	201	97	1	761	25	19	15	39	1.91
50409617--50409914	133	2.2	133	87	2	429	26	20	25	27	1.99
50409666--50409985	133	2.4	133	80	5	308	27	21	22	28	1.99
50412024--50412073	26	2.0	25	81	11	59	24	4	8	64	1.38
50412781--50413247	131	3.6	130	81	3	462	27	17	19	36	1.94
50424743--50424785	19	2.2	20	91	4	70	46	23	6	23	1.76
50427458--50427488	16	1.9	16	93	0	53	35	22	0	41	1.54
50427455--50427494	20	2.0	20	85	0	53	37	22	0	40	1.54
50427748--50427934	55	3.5	53	78	10	175	23	25	17	34	1.96
50429318--50429450	48	2.8	48	77	2	142	34	25	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50435802--50435851	25	2.0	25	88	0	73	24	20	28	28	1.99
50439999--50440182	40	4.6	39	78	10	194	25	28	21	24	1.99
50440027--50440130	39	2.6	40	90	1	165	26	28	20	24	1.99
50440027--50440180	79	1.9	80	83	8	199	25	28	20	25	1.99
50441521--50441640	56	2.1	56	98	0	231	22	23	9	45	1.81
50441222--50441605	211	1.8	211	99	0	759	18	19	10	51	1.75
50449578--50449700	43	2.9	42	81	6	140	27	27	15	29	1.96
50461435--50461574	69	2.0	70	88	1	210	50	2	23	23	1.63
50462052--50462116	22	3.0	22	79	0	76	18	27	16	36	1.93
50464398--50464643	80	3.1	80	82	2	298	20	27	16	36	1.94
50464581--50464659	20	4.0	20	68	14	56	21	26	15	36	1.93
50464402--50464625	120	1.9	120	82	5	283	19	27	16	37	1.93
50464398--50464646	40	6.2	40	78	6	227	20	27	16	36	1.93
50472050--50472118	16	4.2	16	96	3	129	24	0	37	37	1.56
50472050--50472118	33	2.1	32	97	2	129	24	0	37	37	1.56
50472099--50472189	45	2.0	45	85	2	121	27	6	28	37	1.82
50472354--50472388	18	2.0	17	88	5	52	54	0	0	45	0.99
50476662--50476696	9	4.0	9	92	7	63	65	0	0	34	0.93
50476662--50476696	17	2.0	17	94	5	61	65	0	0	34	0.93
50482887--50482929	20	2.2	20	86	0	59	58	2	0	39	1.11
50482893--50483009	19	6.4	19	70	19	70	53	3	1	41	1.28
50484076--50484105	15	2.0	15	93	0	51	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50485884--50485937	28	1.9	28	96	0	99	35	20	18	25	1.95
50486457--50486515	31	1.9	31	92	0	100	33	6	20	38	1.79
50491972--50492206	126	1.9	121	85	10	329	43	1	2	51	1.24
50500484--50500701	108	2.0	108	100	0	436	48	14	8	29	1.72
50502257--50502296	18	2.2	18	86	4	53	12	27	0	60	1.33
50503355--50503389	13	2.6	14	95	4	63	14	11	5	68	1.37
50503354--50503392	13	2.8	14	88	11	62	15	12	5	66	1.41
50504774--50504969	98	2.0	98	100	0	392	51	14	8	26	1.70
50524224--50524307	37	2.2	38	87	2	116	39	30	16	13	1.87
50525758--50525783	13	2.0	13	100	0	52	15	7	15	61	1.55
50526250--50526365	40	2.9	41	87	3	155	23	28	15	32	1.95
50526267--50526365	41	2.5	40	88	5	128	22	31	15	31	1.94
50532541--50532661	47	2.6	49	89	7	196	33	6	28	31	1.83
50533014--50533563	47	11.6	46	92	4	676	31	9	31	27	1.89
50540223--50540381	27	6.1	27	77	10	161	41	22	18	17	1.90
50540266--50540381	54	2.1	54	90	3	180	37	23	21	17	1.93
50540667--50540725	28	2.1	28	93	0	100	25	25	20	28	1.99
50540660--50540754	28	3.0	32	76	17	92	27	24	20	28	1.99
50547669--50547793	50	2.5	50	84	0	169	21	28	23	27	1.99
50549578--50549659	26	3.2	26	92	3	130	24	18	30	26	1.98
50555251--50555295	20	2.1	22	84	8	58	64	0	2	33	1.06
50555251--50555295	22	2.1	21	84	12	56	64	0	2	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50561381--50561437	27	2.1	26	84	15	71	50	10	1	36	1.47
50562383--50562407	11	2.3	11	100	0	50	60	0	0	40	0.97
50562491--50562520	15	2.0	15	93	0	51	13	10	6	70	1.34
50564160--50564209	20	2.7	19	80	20	61	42	2	6	50	1.38
50566739--50566843	30	3.6	29	93	3	174	37	11	32	19	1.87
50566674--50566881	29	7.1	29	81	7	181	37	13	27	21	1.92
50566711--50566868	59	2.7	57	81	6	181	37	11	30	20	1.88
50566678--50566881	59	3.5	56	78	7	176	37	13	27	21	1.91
50569716--50569766	20	2.6	19	87	9	75	31	15	13	39	1.87
50570180--50570229	14	3.3	15	83	13	59	40	0	0	60	0.97
50570188--50570256	17	4.1	17	75	18	65	43	0	1	55	1.08
50570187--50570263	34	2.4	32	84	6	102	44	0	1	54	1.08
50570187--50570277	15	5.7	15	69	18	51	43	0	2	53	1.12
50570187--50570263	15	4.7	16	72	24	54	44	0	1	54	1.08
50570336--50570395	25	2.4	23	71	15	57	55	0	1	43	1.10
50576099--50576210	41	2.7	40	78	9	109	27	25	18	27	1.98
50577947--50577997	24	2.1	25	88	3	77	52	0	5	41	1.25
50578471--50578508	14	2.8	13	92	7	67	47	5	10	36	1.61
50578746--50578921	35	5.1	35	79	2	185	21	22	14	40	1.90
50578747--50578923	34	5.1	34	79	2	192	21	23	14	40	1.90
50578747--50578899	69	2.2	69	95	0	270	21	21	16	39	1.92
50581746--50581783	19	1.9	20	89	10	60	13	10	5	71	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50581746--50581789	21	2.1	21	83	8	54	13	9	6	70	1.33
50582760--50582790	15	2.1	15	100	0	62	25	12	6	54	1.62
50587102--50587214	12	9.8	12	67	18	53	41	2	3	52	1.33
50597094--50597130	19	1.9	19	88	0	56	37	0	2	59	1.12
50599918--50599957	13	2.8	14	85	14	55	55	0	0	45	0.99
50600005--50600030	13	2.0	13	100	0	52	46	0	0	53	1.00
50605596--50605796	100	2.0	101	98	0	386	23	27	26	21	1.99
50611673--50611749	6	12.7	6	77	15	61	68	0	16	14	1.21
50611673--50611749	13	6.3	12	74	17	61	68	0	16	14	1.21
50612969--50613104	43	3.2	42	67	21	111	32	26	19	21	1.97
50612981--50613177	86	2.3	86	82	6	213	33	23	22	20	1.97
50616593--50616630	3	13.0	3	88	5	60	0	31	0	68	0.90
50620197--50620326	66	2.0	66	87	3	190	23	22	16	37	1.94
50629970--50630090	30	4.1	30	71	4	95	21	14	24	38	1.91
50635719--50635870	75	2.0	75	88	0	223	26	29	22	21	1.99
50637795--50637851	24	2.3	24	76	8	62	45	10	17	26	1.81
50637881--50637909	10	3.0	10	95	5	51	41	17	20	20	1.90
50640496--50640537	19	2.1	20	86	8	59	52	4	0	42	1.22
50640496--50640542	21	2.2	20	85	14	60	53	4	0	42	1.20
50647219--50647297	37	2.1	37	90	0	122	25	31	18	24	1.98
50647416--50648390	47	20.7	47	98	0	1835	29	30	8	32	1.87
50650203--50650227	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50654983--50655049	7	9.4	7	73	23	52	55	0	2	41	1.15
50654983--50655052	16	4.9	15	72	19	60	55	0	2	41	1.14
50654984--50655036	17	3.0	18	76	18	58	58	0	3	37	1.16
50655284--50655344	2	32.5	2	74	23	53	52	0	3	44	1.17
50655284--50655345	9	6.9	9	73	26	60	53	0	3	43	1.17
50655474--50655514	13	3.4	13	80	19	61	48	7	0	43	1.30
50655464--50655531	23	3.0	23	93	0	109	45	5	2	45	1.42
50655456--50655526	10	6.6	10	75	19	54	43	5	2	47	1.41
50655464--50655549	23	3.8	22	81	6	84	50	5	2	41	1.39
50661295--50661333	19	2.1	18	95	4	69	46	5	25	20	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187