genome.fa.s15.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  24  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6978128--6978207	31	2.6	32	84	4	92	30	15	7	47	1.72
6979759--6979814	28	2.0	28	96	0	103	25	16	0	58	1.37
6980399--6980460	16	3.9	16	70	6	54	33	6	16	43	1.73
6980560--6980634	32	2.3	32	82	8	91	33	2	20	44	1.65
6982481--6982583	54	1.9	54	84	7	138	31	21	29	18	1.97
6986762--6986859	42	2.3	42	80	3	108	28	18	32	20	1.96
6990476--6990612	48	2.8	49	81	6	154	33	17	26	22	1.96
6990579--6990738	26	6.4	26	71	15	99	35	23	24	16	1.95
6990810--6990866	25	2.3	25	88	8	89	43	22	21	12	1.85
6994233--6994258	7	3.7	7	100	0	52	42	11	30	15	1.82
7006024--7006180	56	2.8	56	94	0	260	30	8	15	45	1.76
7018443--7018868	50	8.7	49	77	10	374	26	19	31	21	1.97
7018442--7018902	97	4.7	95	78	8	437	27	19	31	21	1.98
7018438--7018816	147	2.6	147	90	0	580	27	20	31	21	1.97
7022177--7022228	27	1.9	27	92	0	86	38	17	23	21	1.93
7024762--7024903	41	3.4	42	83	4	173	38	21	15	24	1.92
7024830--7024918	42	2.1	42	80	0	97	41	22	15	20	1.90
7024966--7025046	39	2.1	39	100	0	162	41	25	2	29	1.68
7028204--7028262	30	2.0	30	86	0	82	11	27	27	33	1.92
7030446--7030482	7	5.3	7	100	0	74	43	0	0	56	0.99
7030446--7030490	21	2.1	21	91	0	72	44	2	0	53	1.13
7039294--7039325	16	2.0	16	100	0	64	25	43	0	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7042723--7042748	10	2.6	10	100	0	52	19	0	11	69	1.18
7045781--7045816	18	1.9	19	88	5	56	33	27	0	38	1.57
7046177--7046252	36	2.1	36	83	7	93	39	7	2	50	1.46
7049345--7049376	14	2.2	15	94	5	57	37	0	6	56	1.25
7051087--7051181	28	3.4	28	89	1	147	30	21	24	24	1.99
7051286--7051356	26	2.7	27	80	6	83	35	21	22	21	1.96
7051568--7051900	27	12.3	27	87	2	438	20	15	20	43	1.87
7051570--7051958	81	4.8	81	84	6	322	21	15	19	43	1.87
7052187--7052221	17	2.0	17	88	5	52	25	42	20	11	1.85
7061201--7061252	24	2.2	24	85	0	68	50	11	3	34	1.57
7063774--7063840	34	1.9	35	87	3	100	31	8	14	44	1.76
7066042--7066094	24	2.2	24	86	6	72	47	9	5	37	1.60
7071457--7071485	12	2.4	12	100	0	58	41	0	0	58	0.98
7077535--7077611	19	3.7	21	80	13	77	41	16	5	36	1.71
7077535--7077592	22	2.6	22	84	7	73	43	17	3	36	1.66
7077548--7077624	19	3.8	19	89	6	91	38	16	7	36	1.78
7080026--7080099	38	1.9	38	97	0	139	47	12	18	21	1.81
7080036--7080117	38	2.2	38	82	4	94	54	10	13	20	1.68
7082164--7082513	127	2.8	125	90	1	549	29	15	21	33	1.94
7084320--7084349	13	2.3	13	100	0	60	40	43	0	16	1.48
7084490--7084557	9	7.4	9	83	9	84	22	10	26	41	1.85
7084570--7084780	23	9.5	22	81	9	225	48	25	0	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7084570--7084780	44	4.8	42	83	9	242	48	25	0	25	1.55
7084570--7084780	67	3.2	66	85	6	284	48	25	0	25	1.55
7084570--7084780	88	2.4	88	85	6	277	48	25	0	25	1.55
7086360--7086384	12	2.1	12	100	0	50	24	36	24	16	1.94
7086428--7086501	23	3.3	23	92	3	116	27	0	24	48	1.51
7086532--7086568	9	4.2	9	96	3	67	59	10	0	29	1.31
7087046--7087085	18	2.2	18	95	0	71	40	7	30	22	1.81
7087736--7087760	7	3.6	7	100	0	50	60	12	0	28	1.32
7087931--7087968	20	1.9	20	84	10	51	55	7	2	34	1.43
7088860--7088901	11	3.7	12	84	6	52	54	0	0	45	0.99
7088972--7089011	11	3.6	11	90	6	55	45	0	32	22	1.53
7089546--7089581	7	5.0	7	96	3	63	0	55	2	41	1.14
7089546--7089594	21	2.3	21	78	0	53	2	46	2	48	1.25
7096128--7096182	25	2.2	25	83	0	65	14	20	23	41	1.89
7096463--7096524	31	2.0	31	100	0	124	41	6	19	32	1.77
7099295--7099346	26	2.0	26	85	7	70	30	0	3	65	1.10
7102057--7102106	16	3.2	16	70	18	52	52	0	0	48	1.00
7102038--7102103	29	2.2	30	86	10	91	57	0	0	42	0.98
7102047--7102124	26	2.9	26	78	17	79	56	0	1	42	1.07
7105618--7105785	84	2.0	84	96	0	309	29	16	13	41	1.86
7109001--7109055	20	2.7	21	80	8	69	56	3	3	36	1.34
7112919--7113073	2	77.5	2	100	0	310	50	49	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7122474--7122673	68	2.9	68	75	4	179	38	16	21	24	1.92
7126480--7126520	10	4.2	10	82	14	50	41	0	7	51	1.30
7127379--7127411	14	2.3	15	89	5	50	45	0	15	39	1.46
7129202--7129253	21	2.5	21	100	0	104	48	26	0	25	1.52
7135160--7135198	19	2.1	19	90	0	60	25	0	2	71	0.98
7138003--7138082	40	2.0	40	92	0	133	27	28	16	27	1.97
7146592--7146665	33	2.3	33	82	13	91	13	21	2	62	1.44
7153555--7153596	21	2.0	21	100	0	84	28	19	19	33	1.96
7168297--7168348	23	2.3	23	83	6	72	61	7	7	23	1.49
7171180--7171242	33	1.9	33	87	3	92	20	12	4	61	1.49
7177058--7177098	21	2.0	21	90	0	64	19	29	21	29	1.98
7180019--7180049	14	2.2	14	100	0	62	29	0	12	58	1.35
7188421--7188453	17	1.9	17	100	0	66	9	18	6	66	1.40
7196604--7196633	14	2.1	14	93	0	51	53	0	0	46	1.00
7199671--7199701	16	1.9	16	93	0	53	48	9	6	35	1.62
7199757--7199817	29	2.2	26	80	11	68	24	3	6	65	1.32
7201257--7201530	139	2.0	139	94	0	476	36	20	17	25	1.94
7203356--7203426	31	2.3	31	100	0	142	19	15	9	54	1.68
7207613--7207671	29	2.0	29	93	0	100	32	23	5	38	1.77
7207818--7207881	22	3.0	20	78	10	65	51	21	0	26	1.48
7216246--7216446	32	6.3	32	75	9	135	37	24	18	18	1.94
7216232--7216447	64	3.4	64	78	3	238	37	23	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7216237--7216442	96	2.1	96	79	3	227	37	24	19	18	1.94
7216445--7216502	26	2.2	27	78	9	66	37	22	17	22	1.93
7218956--7219010	27	2.0	27	96	0	101	21	34	3	40	1.71
7219562--7219595	16	2.1	17	88	5	52	32	17	8	41	1.80
7235671--7235711	22	1.9	21	85	5	55	34	2	4	58	1.32
7237283--7237553	95	2.8	94	81	6	303	38	3	16	41	1.66
7238182--7238222	21	2.0	21	85	9	57	4	19	46	29	1.71
7239148--7239179	7	4.6	7	100	0	64	56	15	0	28	1.40
7240366--7240409	11	4.1	10	80	13	52	50	2	27	20	1.60
7242951--7243005	21	2.6	21	82	0	83	16	18	27	38	1.92
7251535--7251581	17	2.5	20	71	28	50	55	0	2	42	1.12
7255720--7255768	23	2.1	23	85	7	64	36	20	4	38	1.72
7260295--7260378	30	2.8	31	80	5	100	26	16	23	33	1.96
7264312--7264363	23	2.3	23	86	0	68	28	11	21	38	1.88
7272376--7272465	44	2.0	44	85	4	119	48	2	11	37	1.51
7283251--7283292	7	5.9	7	78	15	50	16	2	50	30	1.58
7283250--7283292	23	1.9	22	90	4	68	16	2	48	32	1.58
7283453--7283494	13	3.3	13	80	6	50	16	2	30	50	1.58
7283623--7283711	14	6.4	14	71	11	58	21	1	30	47	1.58
7283626--7283707	21	3.9	19	74	13	56	21	1	30	46	1.59
7284133--7284224	46	2.0	46	95	0	166	32	23	23	19	1.97
7284192--7284431	115	2.1	116	91	3	396	29	18	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7284269--7285082	261	3.1	261	87	3	1156	26	18	21	33	1.96
7285558--7285597	21	1.9	21	94	0	71	37	15	10	37	1.80
7285571--7285647	34	2.3	34	95	0	136	29	12	14	42	1.83
7287139--7287164	12	2.2	12	100	0	52	30	15	0	53	1.42
7287183--7287318	34	3.7	34	75	16	146	35	7	3	53	1.46
7287116--7287306	43	4.6	43	66	26	115	35	7	2	54	1.42
7287151--7287328	77	2.3	77	92	2	297	35	6	2	54	1.41
7287237--7287268	9	3.6	9	91	0	55	46	0	0	53	1.00
7287293--7287351	23	2.4	25	83	11	86	33	6	1	57	1.35
7287557--7287682	9	14.0	9	82	0	162	47	16	0	35	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187