genome.fa.s15.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  117  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34607426--34607455	15	2.0	15	93	0	51	40	16	0	43	1.48
34607558--34607590	13	2.5	13	95	0	57	33	21	3	42	1.68
34611749--34611797	22	2.2	22	96	0	89	20	8	36	34	1.82
34613813--34613861	22	2.2	22	96	0	89	20	8	36	34	1.82
34624217--34624371	50	3.1	50	68	7	125	23	19	23	32	1.97
34624719--34624802	44	1.9	44	82	0	105	30	22	15	30	1.95
34624718--34624811	44	2.1	44	78	0	98	29	24	18	27	1.98
34624689--34625124	132	3.3	130	85	3	556	29	25	18	26	1.98
34625140--34625299	86	1.8	88	85	5	227	23	24	27	24	2.00
34632795--34632819	3	8.3	3	100	0	50	64	0	0	36	0.94
34634777--34634893	52	2.2	52	95	0	207	21	27	24	26	1.99
34634777--34634912	52	2.6	52	90	2	184	22	27	24	25	1.99
34635639--34635874	40	5.9	40	77	5	226	36	20	25	17	1.94
34635788--34635854	20	3.3	20	67	22	59	38	22	25	13	1.90
34639292--34639325	17	2.0	17	94	0	59	58	8	11	20	1.59
34644669--34644734	34	1.9	34	81	6	80	62	4	22	10	1.46
34658674--34658778	54	1.9	54	90	0	165	28	28	23	19	1.98
34658678--34658801	54	2.3	54	83	2	151	28	27	22	21	1.99
34659868--34659892	13	1.9	13	100	0	50	60	0	0	40	0.97
34662742--34662805	25	2.6	25	90	5	94	32	20	25	21	1.97
34666390--34666422	13	2.4	14	90	5	50	30	15	3	51	1.58
34668059--34668136	27	2.7	27	82	11	84	30	30	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34667947--34668139	104	1.9	104	92	0	323	29	26	22	20	1.99
34674732--34674887	33	4.5	33	74	15	152	33	27	18	20	1.96
34674732--34675066	108	3.1	107	87	5	425	32	27	19	20	1.97
34677336--34677380	14	3.3	14	76	17	58	64	0	20	15	1.29
34677336--34677397	27	2.3	27	94	2	108	64	1	19	14	1.37
34678884--34678922	20	2.0	20	84	0	51	10	17	10	61	1.55
34681332--34681359	12	2.3	12	100	0	56	35	0	25	39	1.56
34689964--34690015	21	2.4	22	83	6	70	69	3	3	23	1.22
34694267--34694544	27	10.3	27	85	0	367	17	18	22	40	1.91
34694267--34694543	136	2.0	135	86	3	378	18	18	22	40	1.91
34705287--34705360	25	3.0	24	80	4	67	22	18	20	37	1.94
34708972--34709038	35	1.9	35	90	0	107	38	5	8	46	1.60
34709039--34709065	13	2.1	13	100	0	54	37	11	0	51	1.37
34711256--34711311	22	2.5	23	82	2	69	51	1	1	44	1.22
34711287--34711326	16	2.5	16	91	0	62	47	2	7	42	1.45
34711315--34711457	68	2.1	67	90	2	234	41	4	8	45	1.56
34711523--34711566	24	1.9	24	90	9	74	61	2	0	36	1.09
34712534--34712575	21	2.0	22	90	4	68	52	7	2	38	1.42
34713966--34714090	48	2.6	48	81	0	160	44	10	28	17	1.82
34714163--34714259	41	2.4	41	84	3	115	14	20	17	47	1.82
34721347--34721414	19	3.4	19	85	8	82	41	14	7	36	1.74
34721370--34721423	19	2.8	19	78	10	65	40	14	9	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34721347--34721423	38	1.9	40	82	10	95	41	14	7	36	1.75
34721489--34721517	1	29.0	1	100	0	58	100	0	0	0	0.00
34726488--34726533	20	2.4	19	85	7	65	32	4	0	63	1.14
34726496--34726533	20	1.9	20	94	0	67	34	2	0	63	1.09
34736707--34736767	26	2.3	26	88	0	86	24	13	19	42	1.87
34736987--34737029	19	2.3	19	80	15	54	27	41	18	11	1.85
34740900--34741345	223	2.0	223	98	0	856	41	8	13	35	1.75
34741424--34741551	64	2.0	64	96	0	238	41	15	9	33	1.79
34743339--34743530	64	3.0	64	98	0	366	41	15	9	33	1.79
34744634--34744859	40	5.7	40	85	2	269	35	28	20	15	1.93
34744587--34744859	120	2.3	116	81	5	309	35	28	19	16	1.93
34751742--34752925	592	2.0	592	100	0	2368	35	10	18	34	1.85
34753037--34753214	51	3.6	49	78	6	187	24	16	27	31	1.97
34753231--34753325	45	2.1	45	92	0	163	26	16	24	32	1.96
34760625--34760652	6	4.7	6	100	0	56	46	0	35	17	1.49
34760708--34760839	51	2.6	50	84	4	167	25	18	25	31	1.98
34760760--34760841	26	3.2	26	64	27	66	24	14	28	32	1.94
34761286--34761478	51	3.8	51	81	6	212	25	15	26	32	1.96
34761400--34761480	26	3.2	26	65	28	73	23	14	28	33	1.94
34761704--34761735	16	2.0	16	93	0	55	59	0	15	25	1.36
34764930--34765122	51	3.8	51	80	6	203	24	15	27	32	1.96
34765044--34765124	26	3.2	26	65	28	73	22	14	29	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34770074--34770154	26	3.2	26	65	28	73	23	14	28	33	1.94
34771808--34771994	51	3.7	51	80	5	193	22	16	28	33	1.95
34771810--34771994	101	1.8	102	83	5	250	22	16	28	32	1.95
34772000--34772091	45	2.0	45	89	0	139	27	17	22	32	1.96
34794780--34794907	41	3.1	41	86	0	157	23	18	28	28	1.98
34795168--34795198	7	4.4	7	100	0	62	16	0	25	58	1.38
34795153--34795198	21	2.1	22	84	11	60	17	0	30	52	1.45
34795186--34795225	21	1.9	21	89	0	62	20	0	37	42	1.52
34795209--34795278	35	1.9	37	85	5	99	25	0	28	45	1.54
34795596--34795628	7	4.7	7	96	0	57	27	0	24	48	1.51
34796723--34796765	6	7.2	6	83	0	50	6	30	30	32	1.84
34801131--34801282	42	3.6	42	90	2	216	25	18	28	27	1.98
34805969--34806062	25	3.8	25	74	5	91	26	22	22	28	1.99
34807653--34807797	55	2.6	55	82	3	175	33	15	19	31	1.93
34807646--34807828	55	3.3	55	77	7	142	34	14	21	30	1.93
34807647--34807831	27	6.7	27	72	11	117	34	14	21	29	1.93
34807812--34807888	27	2.8	28	77	11	81	32	16	25	24	1.96
34807971--34808034	27	2.4	27	83	0	74	39	6	31	23	1.79
34807993--34808063	27	2.6	27	84	0	88	42	7	23	26	1.80
34807985--34808071	27	3.2	27	80	3	86	37	6	27	27	1.82
34810237--34810367	50	2.6	50	85	0	181	21	29	23	25	1.99
34817596--34817634	20	2.0	20	94	0	69	15	23	2	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34817888--34818076	50	3.7	50	81	4	189	23	29	20	26	1.99
34818599--34818637	20	2.0	20	100	0	78	28	5	0	66	1.12
34818601--34818637	10	3.7	10	92	0	65	29	5	0	64	1.15
34820862--34820891	15	2.0	15	93	0	51	50	0	33	16	1.46
34821202--34821452	43	5.9	43	84	3	319	24	17	30	27	1.97
34821202--34821452	85	2.9	86	85	0	333	24	17	30	27	1.97
34828468--34828502	17	2.1	17	100	0	70	37	22	22	17	1.94
34838764--34838829	25	2.7	25	85	2	89	22	30	18	28	1.97
34842096--34842203	54	2.0	54	92	0	180	25	12	23	38	1.89
34844941--34845020	42	1.9	42	94	0	142	46	13	12	27	1.80
34846423--34846529	25	4.3	25	75	8	78	25	27	20	27	1.99
34846481--34846537	24	2.3	25	78	6	62	31	22	21	24	1.98
34850041--34850116	29	2.7	29	81	2	82	30	18	19	31	1.96
34852233--34852354	41	3.0	40	80	4	127	32	17	28	21	1.96
34871912--34872005	47	2.0	47	97	0	179	36	26	4	32	1.76
34880312--34880351	20	2.0	20	85	9	55	42	20	27	10	1.83
34885306--34885350	19	2.3	19	88	3	63	75	2	17	4	1.07
34913292--34913658	102	3.6	102	88	0	563	31	29	20	18	1.96
34920626--34920993	102	3.6	102	89	0	565	31	28	20	19	1.97
34925165--34925370	50	4.1	50	83	2	243	20	31	22	25	1.98
34925139--34925371	100	2.3	100	87	2	335	21	29	22	26	1.99
34931519--34931759	50	4.7	51	83	5	236	23	28	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34931469--34931759	50	5.7	51	79	8	229	23	27	20	28	1.99
34938420--34938444	13	1.9	13	100	0	50	40	24	28	8	1.83
34938540--34939971	720	2.0	715	94	1	2490	40	23	9	26	1.85
34942288--34942352	35	1.9	35	90	6	107	40	7	0	52	1.30
34943965--34944050	25	3.5	24	85	6	109	32	17	22	27	1.96
34943961--34944075	50	2.3	50	82	5	117	33	20	19	26	1.97
34954162--34954232	20	3.5	19	68	11	52	39	5	15	39	1.71
34956391--34956786	22	18.0	22	82	0	459	43	17	10	29	1.82
34956400--34956786	44	8.8	44	88	0	558	43	17	10	29	1.82
34957606--34957767	43	3.8	43	85	3	193	30	26	17	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187