genome.fa.s15.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  102  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29844243--29844293	14	3.8	14	77	15	54	68	0	0	31	0.90
29844992--29845044	26	2.0	26	85	0	70	45	15	16	22	1.85
29845232--29845410	3	59.7	3	100	0	358	33	0	32	33	1.58
29845710--29845744	12	2.8	13	86	8	54	8	31	2	57	1.44
29848034--29848146	56	2.0	56	92	0	190	34	16	9	38	1.82
29851373--29851430	13	4.5	13	78	6	55	36	3	25	34	1.73
29857194--29857254	29	2.1	29	100	0	122	31	18	6	44	1.75
29868987--29869020	10	3.5	10	88	8	52	58	0	0	41	0.98
29878864--29878967	51	2.0	51	81	3	120	38	18	4	38	1.72
29879084--29879159	28	2.7	28	85	6	82	63	1	0	35	1.03
29879092--29879159	28	2.4	28	92	0	109	61	1	0	36	1.05
29882739--29882802	31	2.1	31	90	0	101	25	1	18	54	1.52
29884691--29884731	20	2.0	20	90	0	64	34	7	17	41	1.77
29885274--29885323	18	2.8	18	84	0	64	40	8	38	14	1.75
29893198--29893264	25	2.7	25	93	4	109	44	47	4	2	1.38
29898795--29898881	24	3.7	23	76	11	70	17	22	21	37	1.93
29900648--29900686	20	2.0	20	85	10	53	56	2	0	41	1.13
29901508--29901551	18	2.4	18	88	3	61	65	4	13	15	1.41
29905099--29905239	69	2.0	69	87	2	203	30	14	29	26	1.95
29905504--29905644	69	2.0	69	88	0	210	30	13	29	26	1.94
29904931--29905745	405	2.0	405	96	0	1513	29	16	22	31	1.96
29911848--29911894	11	4.1	12	78	10	53	61	0	2	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29911848--29911914	22	3.0	22	78	8	73	61	0	1	37	1.05
29911852--29911915	11	5.8	11	77	14	51	59	0	1	39	1.07
29912933--29912970	20	1.9	20	94	0	67	31	0	13	55	1.38
29914406--29914453	25	2.0	25	87	4	71	35	4	2	58	1.29
29916555--29916588	18	1.9	17	88	5	50	38	0	2	58	1.13
29916956--29916988	15	2.2	15	89	10	50	42	0	0	57	0.98
29923538--29923680	41	3.5	40	77	6	135	24	26	14	34	1.94
29929990--29930032	11	4.1	10	88	8	59	74	0	0	25	0.82
29929990--29930032	16	2.7	15	89	7	59	74	0	0	25	0.82
29929990--29930032	21	2.0	21	90	0	68	74	0	0	25	0.82
29929990--29930032	5	8.2	5	85	10	59	74	0	0	25	0.82
29937672--29937722	25	2.0	25	100	0	102	31	23	0	45	1.53
29938073--29938153	23	3.7	22	85	8	103	39	20	20	18	1.93
29946973--29947012	6	6.7	6	97	0	71	12	17	2	67	1.33
29956785--29956861	31	2.5	31	82	2	91	62	1	12	23	1.38
29961211--29961496	143	2.0	143	94	0	500	35	21	11	31	1.89
29961637--29961764	31	3.7	31	67	24	78	38	2	12	46	1.54
29961895--29961941	21	2.3	21	85	10	62	36	0	8	55	1.31
29961934--29962039	55	1.9	54	81	7	124	44	0	5	49	1.32
29962171--29962263	45	2.1	44	88	6	134	35	24	5	34	1.79
29962253--29962315	16	3.9	16	93	0	108	26	30	4	38	1.77
29975966--29976430	45	10.5	46	76	11	386	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29975966--29976433	89	5.3	89	74	11	333	29	19	23	27	1.98
29975966--29976250	134	2.1	133	88	5	416	29	20	23	27	1.98
29976099--29976424	174	1.9	174	84	6	446	30	20	21	27	1.98
29978023--29978065	22	1.9	23	90	4	70	23	2	9	65	1.34
29978430--29978464	4	8.2	4	90	9	52	25	2	0	71	1.00
29978413--29978464	8	5.8	9	80	13	54	26	1	1	69	1.10
30000008--30000042	18	2.0	17	88	5	52	45	0	0	54	0.99
29999991--30000177	54	3.2	54	71	19	187	43	2	3	50	1.32
30000021--30000206	59	3.1	58	70	19	184	42	3	3	50	1.36
29999948--30000296	120	2.9	120	98	0	671	42	2	5	49	1.38
30000045--30000243	66	3.2	65	71	19	224	42	3	5	48	1.43
30000128--30000162	18	2.0	17	88	5	52	45	0	0	54	0.99
30000261--30000305	15	2.8	16	83	10	56	48	0	0	51	1.00
30000262--30000302	16	2.6	16	88	7	57	46	0	0	53	1.00
30000447--30000537	45	2.0	44	82	2	110	35	26	5	32	1.80
30000516--30000569	16	3.4	16	89	0	72	33	31	0	35	1.58
30005257--30005354	16	6.3	15	69	15	56	47	3	3	45	1.33
30006451--30006518	35	1.9	35	90	0	109	42	26	8	22	1.82
30013997--30014089	48	1.9	48	91	0	150	46	7	23	22	1.77
30018675--30018717	21	2.0	21	100	0	86	27	4	23	44	1.73
30022410--30022456	24	2.0	24	91	0	76	48	6	10	34	1.63
30026635--30026790	45	3.5	45	81	3	206	28	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30028602--30028789	91	2.1	91	80	0	205	34	20	13	31	1.91
30029282--30029315	9	3.8	9	92	0	59	44	14	11	29	1.81
30029373--30029435	29	2.2	29	86	8	85	17	52	0	30	1.45
30030484--30030539	25	2.2	25	96	0	103	25	12	19	42	1.86
30030574--30030627	23	2.3	23	74	0	54	38	1	9	50	1.45
30030610--30030694	44	2.0	42	83	4	107	34	9	10	45	1.71
30031840--30031879	19	2.0	20	90	4	64	30	0	2	67	1.04
30034099--30034151	27	2.0	27	85	3	72	58	0	0	41	0.98
30044668--30044710	22	2.0	22	90	0	68	44	13	0	41	1.44
30050148--30050345	33	5.5	33	69	18	144	34	26	17	21	1.96
30050142--30050347	74	2.8	75	89	0	324	33	26	18	21	1.96
30053258--30053282	11	2.3	11	100	0	50	44	0	28	28	1.55
30057984--30058011	7	4.0	7	100	0	56	42	0	28	28	1.56
30058168--30058237	35	2.0	35	82	0	86	51	14	14	20	1.76
30058531--30058569	20	2.0	20	100	0	78	56	0	25	17	1.41
30063214--30063365	74	2.1	74	97	0	286	34	22	7	35	1.83
30066300--30066500	62	3.2	59	73	17	163	50	4	3	40	1.43
30066462--30066494	17	2.0	17	88	5	50	48	0	0	51	1.00
30077668--30077875	91	2.3	91	93	0	344	47	3	3	46	1.36
30077687--30077828	47	3.1	47	72	17	143	44	2	3	49	1.34
30077700--30077843	47	3.1	47	69	20	131	45	2	2	49	1.31
30077742--30077909	47	3.7	46	72	16	159	45	3	3	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30077991--30078020	16	1.9	15	93	6	51	40	0	10	50	1.36
30077891--30078181	120	2.4	120	93	1	476	42	2	5	49	1.38
30077964--30078151	61	3.1	60	65	11	150	42	2	6	48	1.42
30078012--30078046	18	2.0	17	88	5	52	45	0	0	54	0.99
30078145--30078186	15	2.7	16	82	14	52	45	0	2	52	1.13
30078136--30078177	15	2.9	15	82	10	52	47	0	0	52	1.00
30078400--30078448	16	3.1	16	81	0	62	20	34	4	40	1.71
30079573--30079597	7	3.6	7	100	0	50	12	0	0	88	0.53
30081187--30081334	29	5.1	29	100	0	296	20	13	16	48	1.80
30094921--30094949	7	4.1	7	100	0	58	55	0	0	44	0.99
30095963--30096026	21	3.0	22	68	9	60	18	20	25	35	1.95
30096262--30096415	23	7.1	23	73	10	128	22	18	21	38	1.93
30096262--30096415	43	3.5	46	75	8	128	22	18	21	38	1.93
30096262--30096415	66	2.4	63	86	4	218	22	18	21	38	1.93
30101331--30101489	45	3.6	45	84	0	185	30	13	22	33	1.93
30111689--30111950	39	6.7	40	87	7	337	25	22	27	24	2.00
30118414--30118466	23	2.2	25	83	6	65	13	30	20	35	1.91
30118509--30118569	24	2.5	24	82	15	81	16	24	21	37	1.93
30118544--30118626	25	3.3	25	78	6	96	21	21	18	38	1.93
30119603--30119663	31	1.9	32	96	3	115	34	9	14	40	1.79
30139453--30139492	7	6.0	7	94	5	66	70	0	15	15	1.18
30139457--30139494	6	6.0	6	93	6	58	68	0	15	15	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30139453--30139494	13	3.2	13	87	12	68	66	0	16	16	1.25
30140686--30141452	87	8.8	87	93	0	1291	29	22	23	23	1.99
30140834--30141404	45	13.1	43	60	19	148	29	23	23	23	1.99
30141575--30141845	44	6.4	41	76	10	206	30	22	20	26	1.98
30141570--30141845	127	2.2	129	92	2	450	30	22	20	26	1.98
30141619--30141845	85	2.7	81	78	13	224	29	22	20	27	1.98
30145640--30146108	238	2.0	236	86	2	663	29	12	18	39	1.87
30156094--30156122	14	2.1	14	100	0	58	24	41	13	20	1.89
30158204--30158237	18	1.9	18	88	5	52	47	14	5	32	1.69
30160107--30160614	261	1.9	261	97	0	971	39	16	8	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187