genome.fa.s15.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  127  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37862235--37862312	28	2.8	27	80	7	93	53	1	12	32	1.47
37862579--37862624	24	1.9	24	81	0	56	52	4	6	36	1.47
37863309--37863376	20	3.6	19	83	11	77	70	4	20	4	1.22
37863759--37863809	26	1.9	27	88	4	77	11	3	41	43	1.60
37863890--37863936	16	3.0	15	77	17	51	14	0	4	80	0.85
37864263--37864723	176	2.6	175	92	0	778	28	20	19	32	1.97
37865548--37865598	26	1.9	27	88	4	77	15	1	41	41	1.58
37866386--37866429	11	3.9	11	82	5	52	63	2	0	34	1.07
37868169--37868523	27	13.3	27	86	5	497	42	20	20	16	1.89
37868169--37868523	53	6.6	54	87	4	497	42	20	20	16	1.89
37868169--37868523	80	4.4	81	88	4	515	42	20	20	16	1.89
37882622--37882675	25	2.2	25	83	6	65	33	24	14	27	1.94
37884852--37884899	14	3.2	14	72	16	51	39	4	12	43	1.62
37900948--37901008	32	1.9	32	93	0	104	36	1	31	31	1.68
37904209--37904259	8	6.5	8	77	18	54	1	45	1	50	1.24
37904209--37904259	15	3.3	15	76	23	52	1	45	1	50	1.24
37904985--37905514	27	19.6	27	81	3	537	42	21	17	18	1.89
37905682--37905753	27	2.8	27	83	6	78	18	22	20	38	1.93
37905879--37905951	28	2.6	28	84	0	83	23	31	24	20	1.98
37912904--37913312	27	15.3	27	83	3	468	41	17	22	18	1.90
37913471--37913542	26	2.8	25	85	6	83	8	22	27	41	1.82
37913656--37913743	28	3.2	27	85	6	122	22	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37923585--37923672	28	3.1	27	87	8	113	29	19	18	32	1.95
37927041--37927122	24	3.4	24	89	0	119	48	23	6	21	1.72
37927048--37927117	11	6.0	11	69	12	50	51	24	4	20	1.65
37927041--37927174	24	5.6	24	82	3	117	46	20	6	26	1.75
37927192--37927366	27	6.5	27	84	2	199	20	20	21	37	1.94
37927192--37927405	81	2.6	80	83	2	232	20	19	21	38	1.93
37927195--37927443	27	9.3	27	82	5	177	22	18	20	39	1.93
37937517--37937550	17	1.9	18	94	5	61	41	5	14	38	1.70
37939017--37939069	5	10.8	5	77	4	54	18	7	0	73	1.06
37939025--37939077	24	2.2	24	83	6	63	22	5	0	71	1.06
37940351--37940407	23	2.5	21	78	15	60	14	3	8	73	1.20
37944123--37944159	3	12.3	3	88	11	58	64	0	0	35	0.94
37944123--37944175	24	2.2	24	83	9	65	66	1	0	32	1.03
37944381--37944419	19	2.0	21	85	10	55	69	5	10	15	1.34
37944594--37944662	21	3.2	22	75	21	65	37	15	7	39	1.76
37944613--37944671	19	3.0	21	85	14	90	35	15	10	38	1.81
37948950--37949132	101	1.8	102	86	1	269	25	15	26	32	1.96
37948946--37949138	51	3.8	51	78	6	212	25	15	26	32	1.96
37952086--37952208	6	20.2	6	71	14	56	71	3	4	21	1.17
37952125--37952217	18	5.2	17	76	13	73	75	4	1	19	1.03
37952125--37952218	12	8.0	11	78	12	73	74	4	1	20	1.05
37952944--37953017	37	2.0	37	100	0	148	64	10	8	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37953104--37953173	4	17.0	4	74	21	56	70	0	5	24	1.09
37953104--37953173	9	8.5	8	74	17	56	70	0	5	24	1.09
37953107--37953167	26	2.3	27	81	13	74	70	0	6	22	1.10
37953116--37953183	22	3.2	21	78	18	70	69	0	8	22	1.16
37953121--37953173	19	2.7	19	85	11	63	71	0	3	24	1.02
37958100--37958149	10	4.9	10	80	20	50	30	4	6	60	1.39
37960350--37960398	22	2.2	22	88	0	80	34	0	36	28	1.58
37961811--37961995	40	4.7	40	82	6	216	25	27	21	24	1.99
37961811--37961993	79	2.3	80	82	9	214	25	27	21	25	1.99
37974886--37974944	26	2.2	27	81	3	66	71	8	5	15	1.28
37976592--37976726	45	3.0	45	100	0	270	35	6	17	40	1.76
37977485--37977609	41	3.0	41	86	5	171	23	30	12	33	1.92
37977539--37977606	21	3.3	21	68	12	59	26	32	10	30	1.90
37978917--37979053	40	3.4	40	79	9	145	21	20	26	32	1.98
37983544--37983572	12	2.5	12	94	5	51	27	0	17	55	1.42
37984882--37984917	14	2.5	15	90	4	56	66	0	8	25	1.19
37984885--37984917	15	2.2	16	84	15	52	63	0	9	27	1.24
37987585--37987705	54	2.2	53	79	5	127	23	25	31	19	1.98
37989126--37989304	85	2.1	85	96	0	331	37	8	27	25	1.86
37991442--37992607	47	24.6	47	97	0	2010	33	9	28	28	1.89
37998946--37998992	20	2.3	20	100	0	94	25	27	19	27	1.99
37999895--38000023	33	4.2	28	71	18	78	31	20	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37999899--37999993	33	2.9	33	93	0	154	35	20	21	23	1.96
38000177--38000236	27	2.2	28	85	11	81	38	21	21	18	1.94
38000421--38000663	26	9.3	26	85	3	319	24	16	20	38	1.93
38003587--38003633	24	2.0	24	82	0	58	44	17	10	27	1.81
38007795--38007854	24	2.5	24	83	2	75	20	0	25	55	1.44
38010932--38011193	39	6.7	40	88	7	337	24	27	22	25	2.00
38018927--38019111	79	2.3	81	83	7	227	24	28	22	24	2.00
38018927--38019111	40	4.7	40	82	7	225	24	28	22	24	2.00
38021933--38021975	18	2.4	18	88	0	59	13	23	18	44	1.86
38022569--38022607	12	3.2	12	85	0	51	20	23	5	51	1.67
38022806--38023048	50	4.7	51	76	8	183	23	25	20	29	1.99
38026810--38026846	18	2.0	19	85	15	51	43	5	18	32	1.73
38028570--38028602	16	2.0	17	88	5	50	27	3	18	51	1.60
38038815--38038852	20	1.9	20	84	10	51	52	28	0	18	1.45
38039999--38040040	3	14.0	3	94	0	75	66	30	0	2	1.04
38043709--38043830	44	2.8	44	73	12	124	31	25	16	27	1.96
38047120--38047394	139	2.0	139	95	0	496	32	27	13	26	1.94
38051746--38051867	44	2.8	44	73	12	124	31	25	16	27	1.96
38052506--38052535	8	3.6	8	95	4	51	60	16	0	23	1.36
38053400--38054124	359	2.0	359	92	0	1209	32	24	19	23	1.97
38055265--38055349	25	3.4	24	72	15	66	23	20	24	31	1.98
38055775--38055806	16	1.9	17	93	6	57	37	9	9	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38059670--38059892	40	5.6	40	86	3	245	26	27	21	24	1.99
38059670--38059892	120	1.9	119	81	6	272	26	27	21	24	1.99
38059824--38059901	40	1.9	41	82	10	97	26	28	21	23	1.99
38068518--38068553	17	2.1	17	100	0	72	5	36	38	19	1.75
38075121--38075193	22	3.4	22	74	11	71	38	12	24	24	1.90
38075105--38075212	20	5.2	20	70	8	81	33	15	25	25	1.95
38075105--38075212	42	2.6	42	88	2	155	33	15	25	25	1.95
38078387--38078507	29	4.1	29	82	1	125	36	13	25	24	1.92
38086824--38086875	20	2.6	19	85	8	68	44	17	11	26	1.83
38088697--38088736	20	2.0	21	95	5	73	47	15	10	27	1.77
38093767--38093813	15	3.1	15	81	0	58	51	0	12	36	1.40
38095542--38095575	17	1.9	18	94	5	61	32	5	2	58	1.37
38095586--38095662	29	2.8	28	78	17	97	57	0	11	31	1.35
38099143--38099195	27	2.0	27	88	0	79	33	18	26	20	1.96
38099889--38099941	27	2.0	27	88	7	81	30	15	30	24	1.95
38099889--38099960	27	2.7	27	76	8	67	27	18	27	26	1.98
38103836--38103906	27	2.6	27	77	0	79	28	38	16	16	1.91
38104877--38104919	17	2.6	16	82	10	50	65	2	2	30	1.18
38110710--38110756	23	2.0	23	100	0	94	27	17	4	51	1.64
38110716--38110766	23	2.3	22	86	10	68	29	17	3	49	1.65
38122886--38122952	28	2.4	28	90	5	100	14	14	37	32	1.88
38124507--38124546	19	2.1	19	90	9	64	35	7	2	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38124596--38124750	78	2.0	78	93	3	269	30	3	8	57	1.44
38131994--38132210	38	5.7	38	83	2	247	14	21	29	34	1.93
38131994--38132205	114	1.9	114	83	0	280	14	21	29	33	1.93
38135325--38135376	23	2.3	22	75	21	54	9	23	1	65	1.32
38135370--38135408	18	2.2	18	85	0	51	12	23	2	61	1.43
38136996--38137232	118	2.0	118	99	0	465	47	16	11	24	1.80
38137189--38137829	315	2.0	315	95	3	1138	43	14	17	24	1.87
38140738--38140770	16	2.0	17	88	5	50	12	12	27	48	1.76
38143007--38143060	27	2.0	27	100	0	108	48	22	7	22	1.75
38143946--38144033	43	2.0	43	100	0	176	10	27	2	60	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187