genome.fa.s15.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  108  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31679434--31679471	14	2.7	14	91	0	58	36	5	5	52	1.47
31682353--31682378	4	6.5	4	100	0	52	23	0	0	76	0.78
31688217--31688260	16	2.7	17	79	10	56	31	20	4	43	1.72
31699074--31699105	9	3.4	9	95	4	55	0	43	9	46	1.35
31706354--31706392	21	1.9	20	85	15	53	17	7	12	61	1.54
31707913--31707979	34	1.9	35	84	3	91	20	26	19	32	1.97
31714840--31714903	26	2.5	26	89	0	101	39	12	12	35	1.81
31720818--31720919	31	3.4	31	67	24	90	21	21	13	43	1.87
31720825--31721052	60	3.8	61	90	2	327	22	18	13	45	1.84
31720825--31721052	122	1.9	120	86	3	323	22	18	13	45	1.84
31721526--31721603	30	2.5	31	85	2	95	46	10	15	28	1.78
31723389--31723452	27	2.4	27	84	5	76	65	29	3	1	1.17
31733794--31733836	5	9.0	5	87	7	63	44	0	16	39	1.48
31734602--31734632	16	1.9	16	93	0	53	48	0	12	38	1.42
31744191--31744233	18	2.4	18	96	0	77	20	13	23	41	1.88
31745164--31745244	26	3.1	26	85	0	126	22	20	20	35	1.96
31750598--31750673	23	3.3	23	86	0	116	31	27	19	21	1.97
31750899--31750937	18	2.2	17	86	13	53	46	20	0	33	1.51
31755032--31755100	26	2.7	26	93	0	120	18	23	24	33	1.97
31762607--31762635	15	1.9	15	100	0	58	24	6	6	62	1.45
31767228--31767299	36	2.0	36	100	0	144	47	5	19	27	1.72
31767402--31767462	29	2.1	29	96	0	113	27	11	11	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779572--31780605	344	3.0	343	96	0	1888	41	16	9	31	1.81
31781357--31781587	42	5.5	42	80	2	227	28	22	18	30	1.97
31799537--31799593	3	19.0	3	96	0	96	29	33	3	33	1.75
31800384--31800449	33	2.0	33	100	0	132	27	6	12	54	1.60
31801584--31801621	14	2.6	15	88	12	53	34	26	2	36	1.71
31803091--31803207	29	4.1	29	81	4	112	32	23	17	25	1.97
31803100--31803373	28	9.7	29	70	10	156	35	21	16	27	1.94
31806104--31806132	7	4.1	7	100	0	58	72	0	27	0	0.85
31810046--31810076	16	1.9	16	93	0	53	9	6	19	64	1.45
31812125--31812155	4	8.0	4	92	7	55	48	0	0	51	1.00
31814072--31814106	14	2.5	14	90	0	52	40	5	0	54	1.24
31814080--31814107	14	2.0	14	100	0	56	35	7	0	57	1.26
31814556--31814593	19	2.0	19	85	10	51	21	42	0	36	1.53
31821795--31822639	422	2.0	422	100	0	1690	31	11	16	40	1.84
31823755--31823782	14	2.0	14	100	0	56	35	7	0	57	1.26
31826352--31826446	23	4.1	23	83	0	127	46	25	17	10	1.80
31826352--31826446	46	2.1	46	89	0	145	46	25	17	10	1.80
31845126--31845416	50	5.7	50	88	5	397	21	31	21	25	1.98
31850796--31850858	23	2.7	23	87	0	90	36	12	15	34	1.86
31854154--31854248	29	3.3	29	96	0	172	30	17	22	29	1.97
31870814--31871116	27	11.3	26	86	4	372	41	21	18	19	1.91
31871202--31871279	33	2.4	33	100	0	156	20	10	32	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31877418--31877667	115	2.2	115	96	1	457	37	10	17	34	1.84
31878619--31878739	20	5.8	20	69	11	82	13	17	24	44	1.84
31878622--31878742	42	2.9	42	82	9	149	13	17	23	45	1.84
31896288--31896401	42	2.6	43	80	9	106	31	24	14	29	1.94
31896328--31896430	47	2.2	47	82	3	118	33	24	14	27	1.94
31897893--31897924	16	2.0	16	93	0	55	59	0	15	25	1.36
31899983--31901329	445	3.0	445	99	0	2676	32	15	18	33	1.92
31901895--31901957	31	2.0	31	100	0	126	34	9	19	36	1.84
31906688--31906743	28	2.0	28	100	0	112	32	10	3	53	1.53
31907013--31907045	15	2.2	15	94	0	57	24	0	12	63	1.28
31918567--31918921	44	8.2	44	72	10	268	29	21	21	28	1.98
31918613--31918754	40	3.5	40	76	7	167	26	21	19	33	1.97
31918572--31918764	84	2.3	84	100	0	386	26	20	22	30	1.98
31918737--31918856	45	2.7	44	83	13	165	30	20	23	25	1.99
31920581--31920613	15	2.2	15	94	0	57	24	0	12	63	1.28
31933138--31933201	32	2.0	32	96	0	119	46	7	20	25	1.77
31935212--31935265	25	2.1	26	86	10	76	62	0	3	33	1.12
31935765--31935798	16	2.2	15	89	5	50	55	0	0	44	0.99
31943141--31943258	44	2.7	44	82	1	146	24	22	22	30	1.99
31943085--31943510	173	2.5	173	83	7	510	27	22	19	30	1.98
31943229--31943594	84	4.3	84	78	8	389	28	23	19	28	1.98
31943229--31943594	44	8.6	44	70	10	161	28	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31943412--31943556	40	3.5	40	75	13	132	30	22	20	26	1.98
31969110--31969134	6	4.2	6	100	0	50	48	16	0	36	1.46
31970287--31970313	10	2.7	10	100	0	54	59	11	0	29	1.32
31970317--31970341	9	2.8	9	100	0	50	12	16	0	72	1.13
31973374--31973558	101	1.8	102	87	3	275	24	17	25	31	1.97
31973374--31973507	50	2.7	50	82	3	162	24	18	26	30	1.98
31973370--31973556	51	3.7	50	78	7	198	25	17	26	31	1.97
31973567--31973654	45	2.0	45	93	0	149	27	17	21	34	1.95
31977784--31977834	19	2.7	19	85	11	61	62	3	0	33	1.13
31977783--31977834	20	2.7	19	82	5	61	63	3	0	32	1.12
31977855--31977880	10	2.6	10	100	0	52	65	7	0	26	1.20
31982583--31982625	21	2.0	21	95	0	77	46	32	9	11	1.72
31990426--31990480	17	3.5	17	71	16	55	16	5	3	74	1.15
31994898--31995048	68	2.2	68	82	6	173	25	23	15	35	1.95
31998236--31998329	17	5.5	17	71	18	70	40	5	2	52	1.36
32000592--32000666	29	2.6	29	84	0	96	33	13	22	30	1.92
32010899--32010935	20	1.9	19	89	10	58	70	5	10	13	1.32
32011981--32012007	8	3.4	8	100	0	54	11	0	0	88	0.50
32012253--32012307	21	2.6	22	85	8	78	27	9	36	27	1.87
32012388--32012647	132	2.0	132	99	0	511	53	3	5	38	1.39
32015440--32015493	6	9.0	6	87	0	81	38	0	61	0	0.96
32015440--32015493	18	3.0	18	100	0	108	38	0	61	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32016519--32016573	21	2.6	21	97	0	101	25	9	0	65	1.22
32016998--32017031	17	2.0	17	88	11	52	35	0	41	23	1.55
32018691--32018953	40	6.6	39	86	4	278	25	27	21	25	1.99
32018691--32018953	120	2.2	119	82	4	307	25	27	21	25	1.99
32018885--32018962	40	1.9	41	82	10	97	26	28	20	24	1.99
32026641--32026903	40	6.6	39	86	4	278	25	27	21	25	1.99
32026641--32026903	120	2.2	119	82	4	307	25	27	21	25	1.99
32026835--32026912	40	1.9	41	82	10	97	26	28	20	24	1.99
32029730--32029978	75	3.3	75	71	11	243	42	19	6	32	1.75
32029705--32030055	156	2.3	155	91	1	567	42	19	5	31	1.75
32030000--32030039	16	2.5	15	88	4	53	47	27	0	25	1.52
32037282--32037423	27	5.3	27	80	0	131	33	15	23	27	1.95
32037301--32037484	81	2.3	81	80	0	188	33	16	23	25	1.96
32037297--32037494	27	7.3	27	80	2	164	34	17	22	26	1.95
32040091--32040143	16	3.2	16	94	5	97	24	0	37	37	1.56
32040379--32040413	18	2.0	17	88	5	52	54	0	0	45	0.99
32040362--32040821	120	3.8	120	95	1	746	48	5	1	44	1.35
32040929--32040961	14	2.3	15	89	5	50	75	6	0	18	1.00
32041308--32041457	59	2.6	58	85	3	212	37	22	18	21	1.94
32057995--32058128	55	2.4	54	81	4	160	47	15	8	28	1.76
32061491--32061525	13	2.6	13	90	4	52	31	0	0	68	0.90
32061789--32061942	50	3.1	50	76	12	163	23	17	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32061939--32062299	175	2.1	173	92	1	596	29	19	18	32	1.96
32063505--32063669	64	2.6	65	94	0	278	15	24	16	42	1.88
32074858--32074901	21	2.1	21	83	8	54	70	2	2	25	1.10
32078446--32078591	40	3.6	41	82	9	176	23	22	28	25	2.00
32078446--32078624	80	2.2	80	80	6	186	25	21	27	25	2.00
32088215--32088491	50	5.6	50	68	8	197	30	19	25	23	1.98
32088213--32088499	100	2.9	100	94	0	495	29	20	25	24	1.99
32090456--32090509	27	1.9	28	85	7	74	35	5	3	55	1.41
32098613--32098680	34	2.0	34	88	0	100	29	44	5	20	1.75
32099742--32099816	21	3.7	20	76	13	73	80	6	12	1	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187