genome.fa.s15.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  18  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4819983--4820021	18	2.1	19	85	4	53	17	0	7	74	1.05
4820298--4820407	10	11.2	10	71	7	64	59	4	1	34	1.29
4820667--4820720	20	2.7	20	72	8	56	37	0	1	61	1.07
4820667--4820759	22	4.4	21	69	21	61	31	0	3	65	1.08
4821083--4821275	86	2.2	84	83	8	235	38	21	8	31	1.83
4825070--4825097	10	2.8	10	100	0	56	42	0	10	46	1.38
4827083--4827137	29	2.0	27	89	7	83	38	12	0	49	1.41
4827440--4827489	13	3.9	12	79	10	55	42	2	18	38	1.61
4832907--4832931	3	8.3	3	100	0	50	0	0	32	68	0.90
4835583--4835652	34	2.1	34	94	0	122	21	7	25	45	1.77
4839008--4839055	22	2.2	22	85	7	62	22	50	10	16	1.76
4840206--4840239	15	2.3	15	94	0	59	41	14	2	41	1.61
4842814--4842870	26	2.2	26	96	0	105	45	7	28	19	1.76
4843194--4843221	5	5.6	5	100	0	56	82	17	0	0	0.68
4844541--4844583	4	10.8	4	94	0	77	76	0	23	0	0.78
4846162--4846260	52	1.9	52	89	4	155	30	31	0	38	1.58
4846213--4846263	22	2.3	22	87	12	70	31	31	0	37	1.58
4846297--4846365	31	2.2	33	92	5	115	34	1	0	63	1.03
4846297--4846357	11	5.7	11	71	7	54	36	1	0	62	1.05
4847238--4847276	20	1.9	19	85	10	51	30	2	12	53	1.52
4848691--4849716	109	9.0	108	79	13	861	43	26	0	29	1.59
4849142--4849197	6	9.7	6	84	3	71	35	42	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4849142--4849225	40	2.1	40	84	0	105	38	36	1	23	1.63
4849381--4849423	22	2.0	22	90	0	68	39	30	0	30	1.57
4849544--4849599	6	9.7	6	84	7	80	33	46	0	19	1.50
4849544--4849627	40	2.1	40	84	0	105	36	38	0	25	1.56
4848687--4849680	58	17.2	58	81	11	1141	43	27	0	29	1.59
4848687--4849705	29	35.4	28	79	15	1022	43	26	0	29	1.59
4849587--4849728	23	5.4	27	82	15	140	42	25	0	31	1.55
4849726--4849849	56	2.2	56	88	2	178	37	13	6	41	1.70
4850907--4851114	109	1.9	109	93	0	362	21	26	19	32	1.97
4858057--4858143	25	3.5	24	71	13	70	33	24	25	17	1.96
4858163--4858245	27	3.2	26	77	12	82	34	19	26	19	1.95
4868085--4868154	35	2.0	34	86	8	97	45	1	4	48	1.30
4868112--4868172	24	2.5	23	80	15	61	45	1	4	47	1.34
4868089--4868170	35	2.4	34	80	8	94	46	1	4	47	1.31
4869473--4869528	3	18.7	3	84	0	67	39	0	3	57	1.16
4869679--4869742	27	2.5	27	80	12	73	39	0	26	34	1.57
4889074--4889107	14	2.5	14	95	4	61	14	0	35	50	1.44
4901231--4901312	35	2.4	34	72	8	85	64	0	1	34	1.01
4904796--4904835	9	4.4	9	87	0	62	45	22	7	25	1.78
4904859--4904916	6	8.7	7	92	7	63	22	1	13	62	1.41
4904867--4904909	6	7.0	6	97	2	77	18	0	16	65	1.28
4904867--4904921	18	2.9	19	89	10	87	21	0	12	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4904958--4904991	13	2.6	13	95	0	59	14	0	47	38	1.45
4906477--4906501	6	4.2	6	100	0	50	16	32	0	52	1.44
4907480--4907591	37	3.0	37	89	0	170	33	4	16	46	1.67
4907814--4907838	12	2.1	12	100	0	50	16	24	36	24	1.94
4909342--4909384	18	2.4	18	88	0	59	18	27	9	44	1.80
4909647--4909686	21	1.9	21	84	0	53	35	42	17	5	1.71
4909808--4910013	49	4.2	49	94	0	349	42	2	7	47	1.44
4913541--4913951	125	3.3	125	95	0	716	30	20	16	32	1.95
4931038--4931065	13	2.2	13	100	0	56	50	7	0	42	1.30
4941622--4941955	42	7.9	42	90	1	524	35	21	19	22	1.96
4941621--4941955	171	2.0	170	91	0	544	35	21	19	22	1.96
4946260--4946493	9	25.8	9	76	6	213	31	2	16	49	1.60
4949793--4950009	114	1.9	114	79	5	242	30	22	21	25	1.99
4950291--4950445	75	2.1	75	95	0	274	23	23	15	37	1.93
4950176--4950559	189	2.0	190	91	0	626	24	24	15	34	1.95
4950366--4950922	114	4.9	114	92	0	898	26	25	15	32	1.95
4954214--4954340	42	2.8	45	69	20	102	40	6	5	47	1.52
4958676--4958722	21	2.2	21	92	0	76	34	21	44	0	1.52
4959131--4959333	42	4.8	42	90	1	318	23	20	22	33	1.97
4960278--4960314	16	2.3	16	90	0	56	72	2	0	24	0.97
4961924--4961987	31	2.1	31	100	0	128	34	9	9	46	1.68
4975314--4975376	24	2.6	24	75	9	74	9	28	7	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4977466--4977504	9	4.2	9	86	3	51	43	2	33	20	1.65
4979386--4979510	44	2.8	44	81	4	146	42	6	4	47	1.48
4986253--4986281	4	7.2	4	100	0	58	48	24	0	27	1.51
4989712--4989797	33	2.7	32	77	13	95	45	18	9	26	1.80
4989788--4989827	20	2.0	20	90	0	62	45	15	10	30	1.78
4993037--4993167	69	1.9	66	84	7	174	45	13	10	30	1.78
5003966--5004013	19	2.3	22	86	13	66	39	2	4	54	1.32
5009131--5009172	16	2.5	17	80	3	50	26	40	0	33	1.56
5011026--5011059	17	1.9	18	88	5	52	50	0	0	50	1.00
5011273--5011356	21	4.1	21	86	6	109	20	1	34	44	1.59
5011275--5011365	14	6.6	14	71	12	64	19	2	35	42	1.64
5011283--5011355	7	10.7	7	71	11	53	17	1	35	45	1.58
5011843--5011954	22	4.9	22	70	13	57	59	0	2	36	1.17
5015181--5015324	72	2.0	72	94	0	252	36	9	16	36	1.82
5019674--5019851	27	6.6	27	80	3	160	28	29	15	26	1.96
5019695--5019850	82	1.9	81	85	3	215	27	29	16	26	1.96
5021612--5021669	28	2.1	28	93	0	98	34	15	15	34	1.89
5024934--5024975	22	1.9	22	85	0	57	54	4	23	16	1.61
5026312--5026381	26	2.6	27	91	6	108	42	8	1	47	1.43
5038421--5038536	58	2.0	58	91	0	187	18	15	21	44	1.86
5046337--5046386	11	4.2	12	75	12	50	18	6	2	74	1.12
5046339--5046380	22	1.9	22	90	0	66	14	7	2	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5046335--5046403	35	2.0	35	85	0	93	14	11	1	72	1.19
5048945--5049067	41	3.0	41	85	5	158	26	26	17	29	1.98
5049432--5049646	77	2.8	75	77	4	216	40	17	3	37	1.68
5052237--5052340	51	2.0	51	94	0	181	25	15	23	36	1.93
5058599--5058759	83	1.9	83	83	10	202	44	14	9	32	1.77
5059404--5059564	87	1.9	87	88	2	243	32	8	16	43	1.77
5059404--5059635	88	2.6	88	82	6	256	32	7	17	42	1.78
5062084--5062138	21	2.7	21	83	5	69	21	30	29	18	1.97
5075787--5075832	23	1.9	25	91	8	78	19	15	10	54	1.70
5077535--5077565	7	4.4	7	100	0	62	45	0	25	29	1.54
5084107--5084200	25	3.8	25	77	13	86	21	26	20	31	1.98
5084119--5084213	49	2.0	50	83	10	126	21	27	17	33	1.96
5086939--5087059	54	2.2	54	95	0	215	32	11	10	45	1.75
5087223--5087251	2	14.5	2	100	0	58	51	0	48	0	1.00
5093874--5093936	20	3.2	20	68	8	56	33	17	28	20	1.95
5098163--5098241	37	2.1	37	85	0	104	26	31	18	22	1.97
5105615--5105750	20	6.8	19	72	5	74	36	20	30	13	1.91
5105603--5105763	40	4.0	40	85	0	223	36	19	29	14	1.91
5108827--5108873	16	2.9	16	96	0	85	19	8	25	46	1.77
5114589--5114697	40	2.8	40	85	1	148	15	19	23	41	1.90
5115397--5115709	103	3.0	103	98	0	599	37	4	18	38	1.72
5118648--5118708	25	2.4	25	97	0	113	40	13	19	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5138490--5138567	34	2.3	34	88	0	111	34	11	10	43	1.75
5138742--5138822	23	3.6	23	89	1	119	33	22	25	18	1.97
5140459--5140561	27	3.8	27	87	2	136	29	27	14	29	1.95
5143642--5143667	12	2.2	12	100	0	52	23	30	7	38	1.83
5150415--5150505	27	3.4	28	80	4	98	30	20	23	25	1.98
5150608--5150662	26	2.1	26	89	0	83	38	21	16	23	1.93
5150859--5150944	27	3.2	26	85	8	111	17	13	20	47	1.82
5158203--5158315	27	4.2	27	85	4	79	21	13	23	42	1.87
5158215--5158319	27	3.9	27	91	0	156	19	13	22	44	1.85
5169671--5169741	7	10.4	7	77	17	51	36	0	49	14	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187