genome.fa.s15.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  101  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29518555--29518644	36	2.5	34	86	10	126	52	1	7	38	1.38
29520297--29520376	25	3.2	25	83	1	81	20	26	21	32	1.97
29521542--29521572	12	2.6	12	100	0	62	25	41	25	6	1.79
29521660--29521694	12	2.9	12	86	0	52	28	22	45	2	1.67
29527428--29527614	35	5.2	35	69	13	94	34	21	21	21	1.97
29527428--29527654	75	3.1	75	72	12	236	35	21	21	21	1.96
29527395--29527666	145	1.9	144	88	2	411	35	21	20	22	1.96
29530659--29530765	53	2.0	53	96	0	196	23	10	27	39	1.87
29533500--29533583	41	2.0	41	100	0	168	26	0	9	64	1.24
29533877--29533947	27	2.6	27	77	0	79	23	29	33	12	1.92
29533973--29534142	3	56.7	3	100	0	340	66	0	33	0	0.92
29534328--29534497	19	8.9	19	100	0	340	26	0	15	58	1.38
29537993--29538034	2	21.5	2	95	4	77	50	0	50	0	1.00
29538660--29538770	58	1.9	58	96	0	204	34	18	25	22	1.96
29538925--29538959	17	2.1	17	94	0	61	57	0	20	22	1.41
29550746--29550935	32	6.2	32	77	9	180	38	18	18	23	1.93
29550812--29550923	57	2.0	57	85	0	152	36	18	18	25	1.94
29550780--29550942	89	1.8	89	86	0	236	38	19	18	23	1.93
29550932--29550997	26	2.5	26	85	0	87	37	27	19	15	1.92
29550989--29551049	27	2.3	27	81	15	74	32	21	24	21	1.98
29551114--29551247	24	5.6	24	83	0	142	43	19	8	28	1.81
29551266--29551490	54	4.2	54	86	2	301	23	24	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29551265--29551490	27	8.5	26	86	3	272	23	23	19	33	1.97
29551482--29551542	27	2.3	27	82	0	77	22	16	19	40	1.90
29551903--29552008	53	2.0	53	88	0	158	19	23	21	34	1.96
29553315--29553363	21	2.4	21	86	3	64	36	0	4	59	1.17
29559430--29559488	31	1.9	31	86	6	84	28	32	15	23	1.95
29563040--29563071	15	2.1	15	94	0	55	15	6	9	68	1.36
29563322--29563899	289	2.0	289	100	0	1156	27	21	20	30	1.98
29568895--29568928	16	2.2	15	89	5	50	55	0	0	44	0.99
29577638--29577709	25	2.9	25	93	0	117	26	20	26	26	1.99
29587381--29588048	40	16.7	40	98	0	1282	22	27	20	30	1.98
29597122--29597157	16	2.3	15	90	9	63	66	0	5	27	1.13
29597177--29597228	24	2.2	23	82	3	59	73	3	3	19	1.15
29600696--29600738	21	2.0	21	86	9	59	76	2	4	16	1.05
29605204--29605244	22	1.9	22	90	5	66	31	0	0	68	0.90
29605734--29605763	16	1.9	15	93	6	51	50	3	0	46	1.18
29606356--29606404	25	2.0	24	84	8	62	63	4	0	32	1.13
29606847--29606912	13	5.5	13	72	20	72	36	1	13	48	1.52
29606845--29606914	23	3.0	23	93	0	113	37	1	14	47	1.53
29607536--29607572	16	2.4	16	86	13	51	40	8	2	48	1.47
29609390--29609430	18	2.3	18	95	0	73	19	21	2	56	1.54
29611535--29611590	2	28.0	2	94	0	94	51	46	1	0	1.11
29612979--29613026	18	2.6	19	78	15	55	68	2	0	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29613056--29613085	9	3.2	9	95	4	51	30	0	0	70	0.88
29615185--29615224	15	2.7	15	92	0	62	17	7	27	47	1.74
29616035--29616106	27	2.5	29	80	6	67	73	16	2	6	1.17
29625523--29625549	13	2.1	13	100	0	54	70	0	14	14	1.17
29625518--29625567	7	7.0	7	82	17	59	70	0	16	14	1.18
29626943--29627348	44	8.8	44	72	16	279	32	18	20	28	1.96
29626972--29627399	142	3.0	142	93	0	750	33	18	20	28	1.96
29627464--29627915	50	9.0	50	72	6	322	32	21	20	25	1.98
29627446--29627902	151	3.0	150	70	12	351	32	21	20	25	1.98
29627446--29627915	101	4.7	100	90	2	701	31	22	20	25	1.98
29628632--29628673	21	2.0	21	82	17	52	9	14	4	71	1.28
29629958--29630985	514	2.0	514	99	0	2047	32	16	14	36	1.88
29630572--29632209	819	2.0	819	100	0	3276	33	18	13	34	1.90
29636737--29636809	38	1.9	38	94	0	128	27	24	16	31	1.96
29639137--29639190	23	2.3	23	87	0	81	22	25	18	33	1.97
29648662--29648719	26	2.2	26	75	0	62	29	6	12	51	1.65
29654027--29654053	14	1.9	14	100	0	54	22	11	14	51	1.73
29654274--29654308	13	2.8	13	91	8	56	65	0	0	34	0.93
29656208--29656259	25	2.1	25	96	0	95	17	25	15	42	1.88
29657172--29657362	38	4.9	39	69	17	119	41	3	6	48	1.45
29657125--29657401	120	2.3	120	94	1	484	42	2	5	50	1.38
29657178--29657361	54	3.1	59	66	25	168	41	2	6	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29657177--29657364	61	3.1	61	69	14	199	42	2	6	48	1.42
29657358--29657399	15	2.7	16	82	14	52	45	0	2	52	1.13
29657349--29657390	15	2.9	15	82	10	52	47	0	0	52	1.00
29659148--29659502	147	2.4	147	81	2	392	38	9	10	41	1.73
29666115--29666463	173	2.0	173	100	0	698	26	10	21	41	1.85
29668099--29668146	19	2.5	19	83	9	62	39	4	0	56	1.19
29668471--29668550	29	2.7	29	72	12	83	32	7	1	58	1.34
29673958--29674199	17	14.4	17	79	3	184	45	21	8	24	1.79
29673987--29674199	34	6.3	34	80	4	205	44	22	7	25	1.79
29673986--29674199	51	4.2	51	80	4	225	44	21	8	25	1.80
29677372--29677524	25	6.2	25	70	15	104	37	20	25	16	1.93
29684046--29684096	23	2.2	23	96	0	93	25	9	23	41	1.85
29684641--29684712	36	2.0	36	100	0	144	25	22	13	38	1.91
29685526--29685590	4	16.2	4	100	0	130	26	0	24	49	1.51
29692058--29692119	31	2.0	31	100	0	124	32	3	22	41	1.70
29703512--29703542	6	5.2	6	92	0	53	67	16	16	0	1.23
29706308--29707019	40	16.7	41	69	15	227	22	20	23	33	1.97
29706243--29706761	129	4.1	127	80	5	518	22	19	24	33	1.97
29706312--29707031	342	2.1	339	87	2	1066	22	20	23	34	1.97
29706664--29707045	42	9.0	40	67	21	131	23	20	22	34	1.97
29706690--29707066	129	2.9	129	94	1	639	23	20	22	32	1.98
29707082--29707834	50	15.1	50	67	1	346	25	21	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29707084--29707846	100	7.7	100	87	2	867	25	21	22	30	1.98
29707139--29707835	200	3.5	200	86	0	959	25	21	22	30	1.98
29708127--29708183	23	2.4	24	91	2	89	28	24	12	35	1.91
29709075--29709127	18	2.9	18	81	13	56	0	16	3	79	0.88
29709071--29709114	11	4.0	11	85	8	63	0	18	2	79	0.83
29709089--29709127	17	2.2	18	86	13	55	0	15	2	82	0.79
29712215--29712260	19	2.5	19	86	10	60	43	10	19	26	1.84
29712249--29714159	955	2.0	955	98	0	3651	32	21	18	27	1.97
29719556--29719756	43	4.7	44	87	6	236	33	28	18	18	1.95
29719913--29719937	11	2.3	11	100	0	50	28	8	0	64	1.22
29729639--29729687	25	2.0	25	88	8	73	51	8	12	28	1.68
29754163--29754448	79	3.6	79	78	4	326	30	16	11	41	1.84
29755239--29755333	38	2.5	37	84	1	118	31	20	14	33	1.93
29761935--29762025	38	2.4	38	81	0	101	34	14	15	36	1.88
29770366--29770430	21	3.3	19	72	20	53	72	1	23	3	1.07
29770360--29770418	22	2.5	24	83	10	68	72	1	20	5	1.12
29774573--29774641	19	3.6	19	82	7	79	40	1	1	56	1.17
29774588--29774650	20	3.2	20	77	16	69	36	1	3	58	1.23
29779890--29779937	25	2.0	24	83	4	60	68	0	0	31	0.90
29781662--29781757	50	1.9	50	100	0	192	45	6	8	39	1.59
29787803--29787857	24	2.3	24	76	11	60	54	7	1	36	1.39
29788705--29788743	19	2.2	18	90	9	62	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29790380--29790495	35	3.3	35	80	7	128	37	17	24	21	1.94
29796792--29796865	37	2.0	37	97	0	139	31	16	17	35	1.92
29800252--29800282	15	2.1	15	93	0	53	22	25	22	29	1.99
29800534--29800610	38	2.0	38	97	0	145	36	12	16	33	1.88
29804283--29804321	20	2.0	20	85	10	53	20	2	7	69	1.26
29806083--29806112	14	2.1	15	93	6	53	40	0	6	53	1.27
29814858--29814890	5	6.6	5	100	0	66	42	0	0	57	0.98
29815853--29816005	22	6.5	25	81	10	130	17	23	20	38	1.93
29823008--29823035	7	4.0	7	100	0	56	28	0	42	28	1.56
29828594--29828623	15	2.0	15	93	0	51	16	16	0	66	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187