genome.fa.s15.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  159  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48038654--48038711	30	1.9	31	85	3	82	44	6	24	24	1.77
48039939--48040163	69	3.3	69	81	0	270	25	15	17	41	1.88
48041388--48041421	17	2.0	17	94	0	59	41	20	11	26	1.87
48044313--48044362	25	2.0	26	88	4	75	42	8	12	38	1.71
48052487--48052570	44	1.9	44	82	4	107	42	4	2	50	1.36
48052898--48052950	26	2.0	26	88	0	79	47	15	13	24	1.81
48053256--48053304	23	2.2	22	96	3	89	38	2	8	51	1.43
48054189--48054218	5	5.8	5	96	4	51	23	0	0	76	0.78
48055609--48055648	19	2.1	19	85	0	53	52	2	15	30	1.55
48058626--48058793	46	3.7	45	77	7	169	32	20	19	27	1.97
48069413--48069470	25	2.3	26	80	11	68	34	5	3	56	1.38
48070366--48070393	3	9.3	3	100	0	56	67	0	32	0	0.91
48073479--48073530	24	2.2	24	89	0	77	53	7	3	34	1.48
48120524--48120553	16	1.9	15	93	6	51	43	0	23	33	1.54
48124048--48124364	46	6.7	48	75	13	232	26	18	29	25	1.98
48124051--48124405	46	7.5	50	72	16	165	26	17	30	25	1.97
48124096--48124408	138	2.2	138	81	7	335	26	17	30	25	1.98
48126869--48126912	22	2.0	22	82	8	54	38	9	18	34	1.82
48127137--48127360	40	5.6	40	90	1	344	28	25	22	23	1.99
48135366--48135549	40	4.6	40	90	2	282	27	25	23	23	2.00
48139862--48139895	6	5.7	6	92	0	59	82	0	2	14	0.79
48141304--48141356	28	1.9	27	88	3	79	56	13	5	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48142359--48142431	37	2.0	37	97	0	137	16	20	27	35	1.94
48150935--48151017	38	2.2	39	95	4	159	50	13	4	31	1.62
48151605--48151713	41	2.5	45	80	7	127	33	24	15	26	1.95
48152523--48152567	15	3.1	15	90	3	74	33	26	13	26	1.93
48153883--48153942	29	2.1	29	90	0	93	40	16	25	18	1.91
48155342--48155372	15	2.1	15	93	0	53	12	9	6	70	1.31
48157158--48157317	43	3.7	42	79	11	164	31	24	19	25	1.98
48157158--48157317	86	1.9	85	82	8	200	31	24	19	25	1.98
48163550--48163770	40	5.6	40	91	2	331	21	27	23	27	1.99
48170487--48170534	24	2.0	24	91	0	78	20	33	8	37	1.83
48173345--48173647	27	11.2	27	82	5	362	35	18	19	26	1.94
48174088--48174145	19	3.4	19	65	30	58	18	17	17	46	1.84
48174077--48174227	6	24.3	6	68	18	87	19	17	14	47	1.82
48174077--48174218	31	4.5	31	92	0	212	19	18	14	47	1.82
48176928--48177113	80	2.3	80	83	9	229	27	27	20	23	1.99
48176930--48177113	40	4.6	40	83	7	205	27	27	21	23	1.99
48179850--48180208	47	7.6	47	72	11	227	23	29	18	28	1.98
48179894--48180208	94	3.4	93	81	7	345	24	29	17	28	1.97
48179850--48180204	141	2.5	140	79	7	362	24	29	17	28	1.97
48209741--48209791	24	2.3	23	83	16	63	25	17	47	9	1.78
48209755--48209791	12	3.1	12	88	11	58	27	18	45	8	1.77
48213419--48213481	27	2.3	26	82	12	74	34	26	9	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48213588--48213695	27	4.0	26	88	5	128	21	23	19	36	1.95
48222438--48222502	34	1.9	34	100	0	130	40	23	4	32	1.75
48232901--48232970	34	2.1	34	97	0	131	38	30	15	15	1.89
48238283--48238332	17	3.0	16	82	8	55	62	4	0	34	1.14
48238303--48238347	18	2.5	17	82	7	54	73	4	0	22	1.01
48239355--48239388	16	2.1	17	88	5	52	55	2	2	38	1.30
48246909--48246948	17	2.4	16	84	12	53	57	5	5	32	1.42
48251803--48251913	27	4.1	27	78	10	104	15	22	24	37	1.93
48256617--48256674	28	2.1	28	93	0	98	48	6	27	17	1.72
48260461--48260605	41	3.5	41	79	9	143	28	27	20	22	1.99
48263261--48263345	27	3.2	26	83	6	107	16	23	23	36	1.94
48264347--48264375	14	2.0	15	93	6	51	51	20	0	27	1.47
48271890--48271918	14	2.0	15	93	6	51	51	20	0	27	1.47
48274676--48274927	47	5.4	46	76	13	196	28	20	29	21	1.98
48274907--48274952	23	2.0	23	95	0	83	23	28	26	21	1.99
48292045--48292870	39	21.2	39	98	0	1584	20	20	30	27	1.98
48292841--48292935	39	2.4	39	94	0	163	17	26	31	24	1.97
48307011--48307202	40	4.8	40	77	2	206	27	26	20	25	1.99
48306983--48307203	80	2.8	80	85	2	293	27	26	20	25	1.99
48311346--48311407	26	2.4	26	88	0	88	35	14	9	40	1.79
48311535--48311573	6	6.5	6	93	0	60	15	25	2	56	1.52
48315535--48315600	34	1.9	34	84	0	87	28	9	22	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48321852--48322174	161	2.0	161	99	0	637	42	17	11	29	1.83
48325478--48325555	29	2.7	28	84	11	104	25	15	30	28	1.96
48325508--48326009	174	2.9	174	99	0	977	30	13	24	32	1.93
48325962--48326133	88	2.0	88	96	0	317	27	14	27	29	1.95
48344052--48344086	17	2.1	16	90	10	61	57	11	17	11	1.61
48353193--48353313	37	3.3	37	86	3	156	30	22	22	24	1.99
48355058--48355143	43	2.0	43	86	0	118	32	18	11	37	1.87
48355518--48355620	34	3.0	34	91	2	163	50	5	18	25	1.69
48355731--48355799	32	2.2	31	84	10	86	43	0	11	44	1.40
48355752--48355799	16	3.0	16	73	11	53	45	0	12	41	1.42
48356595--48356702	40	2.7	40	82	1	119	22	27	14	35	1.93
48363695--48363728	16	2.1	16	88	0	50	35	5	11	47	1.65
48367529--48367582	24	2.4	22	78	6	54	59	7	3	29	1.42
48372357--48372444	43	2.0	43	100	0	176	39	13	9	37	1.77
48373978--48374010	3	11.3	3	87	6	50	30	3	0	66	1.06
48374241--48374289	3	16.3	3	100	0	98	34	0	0	65	0.93
48374296--48374358	31	2.0	31	96	0	117	30	9	0	60	1.28
48374241--48374367	31	4.3	31	80	11	101	30	7	1	59	1.35
48376247--48376329	41	2.0	41	92	0	139	28	13	22	34	1.92
48386938--48387144	53	3.8	55	77	1	186	19	24	17	39	1.92
48386950--48387144	55	3.6	53	76	2	174	18	24	18	38	1.92
48390168--48390800	44	13.9	44	76	11	442	31	17	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48390168--48390800	88	7.0	88	74	12	501	31	17	20	30	1.96
48390168--48390800	132	4.6	134	74	12	536	31	17	20	30	1.96
48390470--48390590	51	2.4	49	81	12	129	33	17	20	28	1.95
48392622--48392650	14	2.1	14	100	0	58	10	6	34	48	1.64
48401405--48401471	33	2.0	33	100	0	134	5	23	14	55	1.62
48407859--48408124	103	2.6	104	90	3	419	19	20	29	29	1.97
48415349--48415614	103	2.6	104	89	3	401	20	19	29	30	1.97
48415528--48415604	27	2.6	27	82	12	82	19	16	33	29	1.94
48430231--48430323	46	2.0	46	100	0	186	34	19	8	37	1.82
48431178--48431290	51	2.2	50	85	3	145	38	16	21	23	1.93
48436664--48436693	13	2.3	13	100	0	60	20	6	13	60	1.55
48437571--48437820	82	3.1	80	63	24	175	45	3	4	46	1.40
48437574--48437883	157	2.0	157	93	0	530	47	4	3	43	1.42
48438013--48438080	16	4.2	16	94	0	118	38	33	0	27	1.57
48440761--48440802	19	2.2	20	82	4	50	30	7	11	50	1.66
48444497--48444542	24	1.9	24	86	0	65	45	17	26	10	1.81
48452366--48452532	83	2.0	83	98	0	325	29	19	13	37	1.90
48453169--48453352	79	2.3	81	82	11	222	25	26	22	25	2.00
48453169--48453352	40	4.7	40	83	11	202	25	26	22	25	2.00
48455838--48456342	44	11.2	44	63	12	128	30	21	23	24	1.99
48455907--48456189	88	3.1	88	64	18	232	30	21	24	24	1.99
48455969--48456080	56	2.0	56	94	0	197	29	21	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48455837--48456212	188	2.0	188	97	0	716	30	21	23	24	1.99
48456025--48456575	132	4.2	132	91	3	882	30	21	24	23	1.99
48456025--48456575	257	2.1	261	91	2	876	30	21	24	23	1.99
48464256--48464303	17	2.5	19	83	12	55	22	0	4	72	1.01
48484699--48484727	12	2.5	12	94	5	51	41	20	0	37	1.53
48488694--48488727	13	2.5	13	95	4	59	41	5	8	44	1.60
48489022--48489195	32	5.2	33	84	8	217	17	22	17	41	1.89
48489022--48489192	67	2.6	67	94	0	288	18	22	17	41	1.90
48496643--48496687	21	2.1	22	84	12	58	66	8	11	13	1.44
48500201--48500380	34	5.3	34	88	0	225	20	13	32	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187