genome.fa.s15.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  43  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12601621--12601945	41	8.0	41	89	0	499	19	24	27	28	1.98
12602309--12602345	14	2.6	14	91	0	65	24	0	29	45	1.53
12602566--12602604	20	2.0	19	90	5	60	15	0	46	38	1.46
12602659--12602703	7	6.4	7	92	0	63	22	0	46	31	1.52
12602659--12602711	14	3.8	14	85	9	63	24	0	45	30	1.54
12603188--12603214	13	2.1	13	100	0	54	55	7	7	29	1.55
12603792--12603830	20	2.0	20	85	10	53	38	30	0	30	1.58
12603954--12604010	30	1.9	30	88	0	87	47	17	22	12	1.81
12607199--12607432	43	5.3	43	85	3	281	19	18	32	29	1.96
12621852--12621894	20	2.2	20	83	8	52	58	4	0	37	1.19
12626371--12626531	45	3.6	45	85	3	225	36	27	13	22	1.92
12630056--12630119	22	3.0	21	65	6	56	51	10	1	35	1.47
12630517--12630619	29	3.6	29	85	3	138	57	1	13	27	1.47
12630710--12630791	12	6.8	12	76	16	64	54	1	19	24	1.51
12630709--12630792	18	4.7	17	73	22	66	55	1	19	23	1.49
12631073--12631110	20	2.0	20	84	5	51	65	0	10	23	1.23
12631237--12631290	20	2.6	21	85	5	83	62	0	11	25	1.28
12631238--12631311	20	3.5	20	81	10	78	59	0	12	28	1.33
12631279--12631367	6	15.8	6	90	5	100	53	0	17	28	1.44
12631013--12631338	181	1.8	181	82	10	425	56	2	12	28	1.48
12631319--12631376	27	2.1	27	87	0	80	60	0	18	20	1.36
12634042--12634369	90	3.6	90	87	2	471	52	15	7	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12633999--12634435	180	2.4	177	76	8	495	53	13	6	25	1.65
12634734--12634803	27	2.7	25	80	6	68	45	27	4	22	1.71
12640473--12640618	74	2.0	73	91	1	238	34	15	20	29	1.93
12642071--12642116	19	2.4	19	85	0	65	76	0	4	19	0.96
12642121--12642157	20	1.9	18	89	10	56	8	2	13	75	1.13
12646665--12646785	45	2.7	45	84	0	134	22	19	14	43	1.87
12654873--12654904	16	2.0	16	93	0	55	25	15	0	59	1.36
12655425--12655581	78	2.0	78	95	2	280	35	21	8	33	1.85
12658855--12658911	15	3.6	15	72	11	51	43	3	1	50	1.29
12661797--12661856	30	2.0	31	86	3	86	40	0	40	20	1.52
12666960--12667004	18	2.6	17	83	13	56	48	2	0	48	1.13
12673087--12673116	6	5.0	6	91	0	51	30	0	3	66	1.07
12686280--12686358	41	1.9	41	97	0	149	50	16	3	29	1.62
12686397--12686437	19	2.2	19	95	0	73	43	12	4	39	1.63
12696832--12696937	54	2.0	54	90	0	167	33	14	18	33	1.91
12700811--12700839	6	4.8	6	100	0	58	34	17	0	48	1.47
12714121--12714172	18	2.9	18	91	0	77	32	5	17	44	1.72
12716591--12716676	27	3.2	25	73	18	75	39	13	24	22	1.90
12724520--12724545	12	2.2	12	100	0	52	65	0	7	26	1.20
12730184--12730297	43	2.7	43	74	8	106	19	21	30	28	1.97
12732319--12732391	23	3.2	23	76	3	67	23	24	15	36	1.93
12732334--12732394	23	2.6	24	82	5	72	24	26	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12738337--12738383	24	2.0	24	83	4	60	21	14	14	48	1.80
12744506--12744648	28	5.2	27	73	10	92	34	18	26	20	1.95
12749478--12749516	13	3.0	12	85	14	51	61	0	5	33	1.18
12749467--12749520	27	2.0	27	82	7	65	62	0	5	31	1.18
12750913--12751021	23	4.7	23	76	13	91	18	2	36	42	1.65
12752071--12752102	16	2.0	16	100	0	64	31	6	18	43	1.75
12754525--12754577	27	2.0	27	92	0	88	33	16	24	24	1.96
12754526--12754591	27	2.5	27	85	7	82	34	15	27	22	1.94
12755861--12755960	41	2.5	42	85	4	134	39	15	23	23	1.92
12761407--12761462	25	2.2	25	81	12	71	25	23	19	32	1.98
12762516--12762541	13	2.0	13	100	0	52	38	23	7	30	1.83
12764761--12764790	15	1.9	16	93	6	53	60	16	0	23	1.36
12785571--12785625	27	2.0	27	96	0	101	43	14	7	34	1.73
12786008--12786041	10	3.4	10	83	0	50	76	0	2	20	0.92
12787654--12787700	13	3.7	13	80	13	53	21	4	0	74	0.99
12799932--12799977	7	6.6	7	87	0	56	32	0	47	19	1.50
12804906--12805012	36	3.0	36	83	0	133	29	21	8	40	1.83
12813247--12813296	26	2.0	25	84	4	64	46	2	0	52	1.12
12813858--12813902	21	2.2	21	88	4	65	4	13	15	66	1.39
12813856--12813897	21	2.0	21	95	0	75	4	11	19	64	1.44
12815267--12815333	14	4.9	14	76	10	66	38	29	5	25	1.80
12815334--12815386	27	2.0	27	84	0	70	18	5	37	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12819686--12820069	75	5.1	74	76	9	264	35	18	16	30	1.93
12819886--12820065	39	4.8	35	75	14	121	34	21	14	30	1.93
12819922--12820065	39	3.7	39	84	3	200	35	21	14	28	1.93
12819686--12820069	37	10.2	38	76	7	288	35	18	16	30	1.93
12824926--12825311	39	10.2	38	85	1	330	33	17	16	32	1.92
12826633--12826776	76	1.9	76	85	5	202	32	14	21	31	1.93
12830074--12830147	3	25.0	3	94	2	132	68	0	31	0	0.89
12840443--12840485	21	2.0	21	100	0	86	67	0	9	23	1.19
12848842--12848874	15	2.1	16	94	5	59	69	0	0	30	0.88
12859224--12859595	185	2.0	185	97	0	699	30	14	30	23	1.95
12859632--12859684	15	3.5	15	78	0	52	43	7	28	20	1.79
12863556--12863615	22	2.7	22	97	0	111	26	26	13	33	1.93
12867587--12867674	42	2.1	42	97	0	167	30	11	28	29	1.92
12872365--12872477	49	2.3	49	84	0	163	39	19	13	27	1.89
12875122--12875146	8	3.1	8	100	0	50	40	36	0	24	1.55
12880353--12880403	19	2.7	19	93	0	84	39	13	15	31	1.87
12881266--12881380	23	4.9	24	74	14	96	32	6	4	56	1.46
12881267--12881429	70	2.3	69	81	6	186	33	6	4	55	1.48
12881222--12881424	24	8.7	23	70	10	119	34	5	4	54	1.46
12883147--12883181	16	2.2	16	89	0	52	17	17	22	42	1.88
12885766--12885837	6	12.7	6	78	11	55	76	0	16	6	0.99
12885766--12885837	12	5.8	12	77	18	76	76	0	16	6	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12885773--12885837	17	3.9	17	80	15	73	76	0	16	6	0.97
12885772--12885838	28	2.4	26	85	9	80	76	0	17	5	0.99
12885773--12885838	5	12.0	5	75	20	53	75	0	18	6	1.00
12885766--12885838	17	4.3	17	76	16	71	75	0	17	6	1.02
12888046--12890062	45	45.1	45	83	4	2314	28	16	24	31	1.96
12889369--12889401	16	2.1	16	94	0	57	15	27	21	36	1.93
12889279--12889483	106	1.9	106	90	0	329	26	19	23	31	1.98
12889816--12890050	35	6.1	35	80	10	173	27	18	23	30	1.98
12889771--12890072	80	3.8	80	73	17	275	28	18	23	30	1.97
12889731--12890049	160	2.0	160	90	1	505	27	18	23	30	1.98
12890162--12890342	44	4.1	44	65	5	123	28	22	24	24	2.00
12890066--12890340	132	2.1	132	88	0	415	27	21	25	25	1.99
12890422--12890515	44	2.1	45	88	2	136	28	17	24	29	1.97
12890792--12890845	19	2.8	19	97	0	99	38	11	16	33	1.84
12890792--12890868	19	3.7	22	87	6	76	38	9	16	35	1.81
12891707--12891821	23	4.9	24	74	14	96	32	6	4	56	1.46
12891703--12891905	69	2.9	69	78	11	184	33	7	4	53	1.50
12891661--12891865	24	8.8	23	71	10	123	34	5	4	55	1.46
12891779--12891932	69	2.2	69	80	6	179	35	7	4	52	1.51
12891898--12891956	24	2.4	23	77	22	59	35	1	3	59	1.24
12896397--12896461	34	1.9	34	83	0	85	24	0	23	52	1.48
12897238--12897351	7	16.6	7	72	13	60	16	0	39	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12897238--12897330	13	6.9	13	72	13	64	13	0	39	46	1.44
12897236--12897331	20	4.8	20	79	14	83	15	0	39	44	1.47
12897675--12897793	60	2.0	60	82	9	145	29	16	10	43	1.81
12904178--12904208	2	15.5	2	93	0	53	51	0	48	0	1.00
12905613--12905716	38	2.7	38	89	0	154	32	25	13	28	1.93
12912970--12913003	7	4.7	7	85	7	50	47	38	0	14	1.45
12926863--12926894	13	2.5	13	94	0	55	59	12	9	18	1.59
12927491--12927552	27	2.4	25	79	10	70	17	22	17	41	1.90
12938598--12938634	18	2.1	18	90	10	58	18	5	5	70	1.27
12944651--12944693	7	5.7	7	79	15	50	69	0	2	27	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187