genome.fa.s15.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  187  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57545422--57545473	21	2.4	22	84	12	72	1	17	7	73	1.16
57549784--57549827	22	2.0	21	86	4	61	13	11	9	65	1.46
57555084--57555120	12	3.0	13	84	11	51	29	40	18	10	1.85
57564947--57565072	66	1.9	66	93	0	216	20	16	35	26	1.94
57571057--57571264	106	2.0	106	94	0	362	31	18	24	26	1.97
57576381--57576483	48	2.1	48	87	7	147	33	19	13	33	1.91
57578818--57578858	21	2.0	21	90	0	64	21	36	9	31	1.86
57596287--57596381	48	2.0	48	93	0	163	37	10	13	37	1.80
57599139--57599235	30	3.3	30	78	16	87	38	14	21	25	1.92
57599123--57599317	60	3.3	59	71	9	189	35	14	24	25	1.93
57606724--57606911	30	6.3	29	76	8	130	34	13	26	26	1.93
57606750--57606913	30	5.5	30	77	9	156	32	13	26	26	1.93
57606750--57606941	60	3.2	59	76	9	219	33	14	26	25	1.94
57606899--57606971	30	2.4	30	93	0	119	38	13	28	19	1.90
57606770--57606971	60	3.4	58	71	16	155	34	14	25	24	1.94
57606762--57606977	120	1.8	118	87	7	319	33	15	25	25	1.95
57606959--57607017	30	2.0	30	82	0	73	37	11	23	27	1.90
57606750--57607032	120	2.4	119	80	7	272	35	13	25	24	1.93
57609347--57609378	3	10.7	3	93	0	55	68	3	0	28	1.04
57621571--57621609	20	2.0	20	100	0	78	20	20	10	48	1.78
57625732--57625785	27	2.0	27	92	0	90	22	22	33	22	1.97
57629650--57629692	19	2.2	20	83	4	52	27	0	2	69	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57639612--57639682	27	2.6	27	88	0	106	28	15	26	29	1.96
57644417--57644459	14	3.0	14	80	6	50	23	0	2	74	0.93
57654285--57654346	26	2.3	26	78	8	63	62	0	4	32	1.16
57656649--57656726	29	2.7	28	84	11	104	25	15	30	28	1.96
57656679--57664314	174	43.9	174	99	0	15092	29	14	24	31	1.95
57667021--57667188	89	1.9	88	87	1	246	31	13	13	41	1.83
57670106--57670153	24	2.0	24	83	0	60	47	2	2	47	1.25
57676253--57676309	30	1.9	30	92	0	96	33	21	22	22	1.97
57679158--57679197	19	2.2	19	90	4	64	40	15	7	37	1.75
57680247--57680271	8	3.1	8	100	0	50	76	0	0	24	0.80
57682638--57682828	51	3.8	51	80	8	246	29	27	17	25	1.98
57682636--57682820	101	1.8	102	91	3	311	29	26	18	25	1.98
57684284--57684556	139	2.0	139	96	0	501	30	18	8	42	1.79
57685002--57685026	8	3.1	8	100	0	50	76	0	0	24	0.80
57690048--57690085	18	2.1	18	90	0	58	39	34	5	21	1.76
57694434--57694458	13	1.9	13	100	0	50	72	8	8	12	1.29
57701126--57701150	8	3.1	8	100	0	50	52	12	0	36	1.39
57702537--57702568	6	5.3	6	100	0	64	65	0	15	18	1.27
57706379--57706665	50	5.8	50	83	4	348	20	32	19	27	1.97
57706379--57706669	97	3.0	100	80	7	335	20	32	19	27	1.97
57706333--57706665	147	2.3	148	89	1	508	21	31	20	27	1.98
57709288--57709329	18	2.4	18	92	4	68	21	19	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57711080--57711127	21	2.2	22	77	3	53	52	8	4	35	1.51
57717361--57717403	3	14.3	3	100	0	86	67	0	0	32	0.91
57735748--57735797	20	2.5	21	90	9	86	42	24	22	12	1.87
57735760--57735859	22	4.6	21	72	11	69	44	26	17	13	1.84
57745333--57745376	15	2.8	16	86	6	54	50	27	2	20	1.60
57745928--57746309	190	2.0	190	92	0	629	36	24	9	28	1.88
57746700--57746750	22	2.3	22	83	12	61	45	9	15	29	1.79
57765641--57765703	30	2.1	30	90	0	99	58	14	3	23	1.50
57771365--57771537	59	2.9	58	82	5	195	28	17	12	41	1.86
57771388--57771568	59	3.1	58	81	4	202	28	17	12	40	1.86
57772074--57772112	14	2.9	13	81	7	51	23	5	0	71	1.05
57776792--57776840	22	2.2	22	85	0	62	36	16	20	26	1.93
57788384--57788444	25	2.4	26	91	2	97	40	11	16	31	1.84
57789104--57789136	10	3.3	10	87	12	50	57	0	21	21	1.41
57789219--57789255	18	2.1	18	94	0	65	59	0	18	21	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187

The End!