genome.fa.s15.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  185  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56841026--56841115	46	2.0	46	90	0	144	58	11	6	23	1.55
56853193--56853361	74	2.3	75	89	1	259	42	8	13	34	1.76
56859990--56860076	43	2.0	43	100	0	174	28	25	22	22	1.99
56862480--56862513	12	2.9	12	95	4	61	64	0	0	35	0.94
56864951--56865197	50	4.8	50	78	5	210	27	21	27	23	1.99
56866683--56866818	69	2.0	69	89	0	209	26	20	10	42	1.84
56870661--56870914	44	5.5	44	70	17	126	28	22	18	31	1.97
56870643--56871349	142	5.0	142	93	1	1155	26	22	18	32	1.97
56870836--56870929	44	2.1	44	84	0	125	23	25	22	28	1.99
56871096--56871341	44	5.4	44	68	15	142	27	22	18	30	1.97
56870643--56871356	285	2.5	284	91	1	1178	26	22	18	32	1.97
56871263--56871356	44	2.1	44	88	3	136	26	22	22	28	1.99
56883360--56884683	662	2.0	662	99	0	2630	46	9	12	32	1.73
56891718--56891752	3	11.7	3	100	0	70	31	0	0	68	0.90
56894437--56894823	51	7.7	50	78	7	331	29	25	15	29	1.96
56894441--56894823	102	3.8	103	83	8	407	29	25	15	29	1.96
56901720--56901765	23	2.0	23	100	0	92	21	13	17	47	1.81
56914716--56914770	20	2.8	20	74	0	56	16	34	14	34	1.89
56924820--56925343	27	19.6	26	79	11	449	20	17	20	41	1.90
56935381--56935462	6	13.3	6	79	5	65	21	3	2	71	1.13
56935360--56935462	19	5.7	18	75	8	68	20	4	2	71	1.17
56935382--56935449	25	2.7	25	86	0	91	23	4	1	70	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56949596--56949631	16	2.2	17	90	5	56	11	52	0	36	1.37
56959090--56959127	6	6.5	6	96	3	69	15	0	0	84	0.63
56959320--56959393	21	3.5	20	76	20	62	27	8	8	56	1.56
56959548--56959602	27	2.1	25	83	12	67	30	7	1	60	1.35
56959610--56959660	23	2.2	24	79	10	61	35	3	5	54	1.43
56961135--56961168	16	2.1	16	94	0	59	20	11	20	47	1.81
56965579--56965679	7	14.6	7	74	16	70	79	11	0	7	0.99
56965586--56965673	16	6.2	15	77	20	84	77	13	1	7	1.04
56965599--56965684	19	4.3	19	77	20	86	79	13	0	6	0.93
56965581--56965642	27	2.2	28	88	11	101	77	9	1	11	1.06
56965590--56965686	8	11.4	8	76	15	61	78	14	1	6	1.00
56966111--56966249	48	2.9	47	80	5	154	46	21	20	10	1.81
56967452--56968258	51	15.9	51	81	3	863	29	17	24	28	1.97
56975551--56975774	79	2.8	79	86	7	278	25	21	27	25	1.99
56975551--56975807	79	3.3	79	84	7	276	26	21	27	25	1.99
56975551--56975774	40	5.7	40	86	6	289	25	21	27	25	1.99
56978212--56978246	16	2.1	17	89	5	54	11	51	0	37	1.38
56982338--56982392	25	2.2	25	78	9	60	50	21	10	16	1.75
56982937--56983000	25	2.6	25	79	0	92	26	25	25	23	2.00
56984311--56984356	24	1.9	24	95	0	83	39	19	17	23	1.92
56989870--56989924	25	2.2	25	80	6	67	50	29	10	9	1.68
56998533--56998576	22	2.1	22	80	12	58	72	2	2	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56999411--56999460	22	2.3	22	89	6	75	44	12	10	34	1.75
57004233--57004440	91	2.3	91	92	0	335	45	3	4	46	1.39
57004355--57004415	28	2.2	28	85	5	81	45	0	3	50	1.17
57004273--57004415	44	3.2	43	69	20	121	46	2	3	48	1.31
57004467--57004655	59	3.2	57	68	19	152	41	3	4	50	1.37
57004494--57004692	66	3.2	64	68	19	186	41	3	6	49	1.44
57004456--57004720	120	2.2	120	94	1	460	42	2	5	49	1.39
57004529--57004716	61	3.1	61	69	17	192	42	1	6	48	1.39
57004581--57004632	15	3.6	15	80	12	56	44	0	1	53	1.11
57007490--57007697	91	2.3	91	92	0	335	45	3	4	46	1.39
57007612--57007672	28	2.2	28	85	5	81	45	0	3	50	1.17
57007530--57007672	44	3.2	43	69	20	121	46	2	3	48	1.31
57007834--57007868	18	2.0	17	88	5	52	45	0	0	54	0.99
57008033--57008123	45	2.0	45	85	2	121	37	28	6	27	1.82
57008104--57008172	16	4.2	16	96	3	129	37	37	0	24	1.56
57008104--57008172	33	2.1	32	97	2	129	37	37	0	24	1.56
57009672--57009702	16	1.9	16	93	0	53	48	0	3	48	1.17
57010991--57011037	16	3.3	14	80	11	51	46	0	0	53	1.00
57011025--57011125	29	3.3	31	71	21	88	42	0	0	55	1.13
57015176--57015224	16	3.1	16	81	0	62	32	26	4	36	1.75
57019339--57019415	38	2.0	38	94	0	136	35	12	11	40	1.80
57034738--57035121	190	2.0	190	100	0	768	41	7	15	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57036868--57037101	50	4.6	51	75	9	192	27	18	28	25	1.98
57036915--57037101	100	1.8	102	81	6	234	26	18	29	25	1.98
57038636--57038686	23	2.2	23	89	0	75	41	19	9	29	1.84
57045195--57045417	27	8.3	27	72	13	124	30	14	28	26	1.95
57045263--57045430	54	3.1	54	68	19	168	27	15	30	26	1.96
57045232--57045481	108	2.3	108	93	2	423	28	16	28	26	1.97
57045516--57045699	53	3.5	53	81	0	215	40	11	21	26	1.87
57045521--57045691	27	6.4	27	70	9	118	40	11	22	25	1.88
57057459--57057585	40	3.2	40	88	0	191	20	29	18	32	1.96
57057459--57057522	20	3.2	20	65	8	58	18	32	20	28	1.96
57057480--57057541	20	3.1	20	68	9	54	14	33	19	32	1.92
57061155--57061215	32	1.9	32	86	6	88	31	21	18	29	1.96
57066645--57066822	27	6.6	27	84	3	205	29	28	15	26	1.96
57066666--57066821	82	1.9	81	88	3	233	29	28	15	26	1.96
57087483--57087538	21	2.6	21	78	13	69	35	8	33	21	1.85
57096735--57096803	24	2.9	24	79	12	79	50	8	4	36	1.53
57101157--57101379	39	5.7	40	86	7	273	25	22	27	24	2.00
57101157--57101379	79	2.8	81	85	8	282	25	22	27	24	2.00
57101157--57101412	79	3.3	79	82	9	224	26	21	27	24	1.99
57109145--57109329	79	2.3	81	84	7	236	24	22	27	25	2.00
57109146--57109329	40	4.6	40	83	9	216	24	22	27	25	2.00
57109198--57109362	79	2.1	79	84	6	210	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57111786--57111835	18	2.7	19	76	14	52	48	14	30	8	1.72
57124603--57124682	25	3.2	25	87	0	106	32	13	26	27	1.94
57130855--57130927	38	1.9	37	86	8	103	31	21	1	45	1.61
57131057--57131178	23	5.3	23	86	0	181	32	24	21	21	1.98
57133931--57134056	49	2.6	49	85	5	168	30	26	15	26	1.96
57136021--57136093	38	1.9	37	86	8	103	31	21	1	45	1.61
57136223--57136341	23	5.2	23	94	0	202	32	26	21	20	1.97
57138894--57138934	18	2.3	18	87	4	66	31	9	21	36	1.86
57139803--57140019	71	3.1	71	62	21	159	45	8	9	36	1.67
57139707--57140128	138	3.1	138	90	0	666	44	6	8	40	1.62
57142270--57142308	3	13.0	3	100	0	78	33	33	0	33	1.58
57146953--57147013	28	2.1	29	82	14	74	57	1	1	39	1.18
57150704--57150754	17	2.8	18	70	21	52	19	11	33	35	1.88
57151605--57151664	29	2.1	29	100	0	120	31	16	6	45	1.74
57151605--57151653	16	3.2	16	66	16	50	30	12	8	48	1.69
57152032--57152563	288	1.9	285	87	4	791	31	15	19	33	1.94
57153337--57153471	49	2.7	49	83	4	146	31	20	15	32	1.93
57153367--57153471	49	2.1	49	89	1	156	32	20	15	32	1.93
57154489--57154518	15	2.0	15	93	0	51	76	0	10	13	1.01
57163630--57164579	131	7.3	130	90	2	1193	24	23	20	31	1.98
57165818--57165851	7	5.0	7	92	7	61	14	14	0	70	1.17
57165818--57165847	13	2.3	13	100	0	60	13	13	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57166822--57166871	1	50.0	1	79	0	55	2	0	8	90	0.54
57166801--57166863	29	2.1	29	88	5	90	1	4	9	84	0.84
57166801--57166871	28	2.4	30	86	6	92	2	4	8	84	0.84
57166808--57166863	9	5.8	9	83	12	67	0	5	8	85	0.73
57166822--57166863	20	2.1	20	100	0	84	0	0	9	90	0.45
57185916--57186049	39	3.4	39	90	4	207	29	1	21	47	1.60
57192888--57192922	17	2.0	17	88	5	52	40	2	20	37	1.67
57192967--57193067	48	2.1	47	88	1	148	26	12	23	36	1.91
57194883--57195145	40	6.6	40	88	3	325	26	27	20	24	1.99
57202833--57203004	40	4.3	40	87	2	213	25	28	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187