genome.fa.s15.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  184  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56539616--56539649	15	2.4	14	90	5	50	14	2	5	76	1.09
56541470--56541719	46	5.5	46	82	3	272	45	15	20	18	1.85
56541775--56541837	31	2.0	31	100	0	126	39	9	19	31	1.83
56544294--56544330	17	2.2	17	90	4	58	10	0	13	75	1.04
56544468--56544493	11	2.4	11	100	0	52	19	26	0	53	1.45
56549196--56549390	50	3.9	50	79	3	162	21	26	24	27	1.99
56558816--56558857	18	2.3	18	95	0	75	30	11	11	45	1.77
56563897--56563941	14	3.0	14	76	17	54	46	8	13	31	1.74
56566379--56566442	21	3.0	21	83	0	83	9	21	18	50	1.75
56572174--56572345	79	2.2	79	82	3	211	24	21	28	25	1.99
56572121--56572343	40	5.6	39	80	8	200	25	21	27	25	1.99
56572201--56572378	79	2.2	80	81	2	198	24	21	28	24	1.99
56581411--56581595	40	4.7	40	82	5	196	23	20	28	28	1.99
56581464--56581614	79	1.9	80	80	1	178	23	19	29	27	1.99
56585717--56585767	25	2.0	25	81	14	59	60	7	9	21	1.53
56585979--56586003	8	3.1	8	100	0	50	76	0	0	24	0.80
56587093--56587151	6	9.8	6	88	0	91	16	38	0	44	1.48
56587093--56587178	24	3.6	23	79	6	91	15	40	3	40	1.64
56587350--56587379	12	2.5	12	94	0	51	16	10	36	36	1.82
56592067--56592092	10	2.6	10	100	0	52	61	0	0	38	0.96
56592311--56592353	18	2.4	18	92	0	68	41	0	34	23	1.55
56598552--56599147	198	3.0	199	95	1	1061	29	15	16	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56600780--56600810	9	3.4	9	90	0	53	25	12	22	38	1.90
56600864--56600900	18	2.1	18	94	0	65	51	13	5	29	1.63
56600951--56601008	30	1.9	30	92	3	98	18	41	0	39	1.51
56601804--56601831	5	5.6	5	100	0	56	21	17	17	42	1.89
56601923--56601949	5	5.4	5	100	0	54	22	18	18	40	1.91
56602136--56602169	16	2.1	17	88	5	52	29	5	2	61	1.34
56603836--56603884	12	4.3	12	80	12	50	36	0	2	61	1.08
56608790--56608854	25	2.6	25	97	0	121	29	18	30	21	1.97
56608788--56608900	25	4.7	23	80	11	93	30	19	28	21	1.97
56608964--56609025	26	2.4	26	81	5	72	37	24	24	14	1.93
56613426--56613593	86	1.9	87	92	1	284	38	22	9	29	1.85
56613677--56613740	8	7.4	8	80	13	56	68	0	3	28	1.04
56613688--56613738	19	2.7	19	84	3	68	74	0	3	21	0.98
56613731--56613793	10	6.7	10	75	17	55	57	1	1	39	1.18
56613727--56613784	18	3.2	17	79	11	71	62	0	1	36	1.06
56613679--56613757	28	2.8	28	78	3	79	68	0	2	29	1.03
56613674--56613784	37	3.1	36	79	10	109	65	0	2	31	1.06
56613879--56613911	11	3.1	11	86	4	50	33	3	0	63	1.10
56614161--56614326	87	1.9	86	85	6	228	31	10	20	37	1.87
56622750--56622776	14	1.9	14	100	0	54	37	22	25	14	1.93
56631465--56631521	20	3.1	18	80	9	62	28	5	7	59	1.45
56635045--56635181	42	3.5	42	71	17	148	33	27	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56635043--56635215	75	2.3	75	93	0	301	33	27	17	20	1.96
56642560--56642840	27	8.5	32	71	22	126	31	27	20	19	1.97
56642586--56642665	27	3.0	26	94	5	142	27	30	23	18	1.98
56642644--56642780	42	3.5	41	73	17	146	33	27	18	21	1.96
56642642--56642818	75	2.4	75	93	1	293	32	26	19	21	1.97
56647090--56647114	4	6.2	4	100	0	50	52	0	24	24	1.48
56662940--56663123	79	2.3	81	81	10	211	25	27	21	25	1.99
56662940--56663123	40	4.7	40	82	8	200	25	27	21	25	1.99
56671584--56671768	79	2.3	81	83	7	227	24	27	22	24	2.00
56671584--56671768	40	4.7	40	82	7	225	24	27	22	24	2.00
56681651--56681757	54	2.0	54	81	3	126	22	32	17	27	1.96
56683250--56683288	19	2.1	18	85	4	51	33	17	0	48	1.48
56686264--56686433	27	6.3	27	84	0	214	30	22	13	32	1.93
56689307--56689344	18	2.1	19	85	14	53	63	7	5	23	1.42
56689450--56689501	27	1.9	27	88	0	77	38	17	5	38	1.74
56697067--56697220	27	5.7	27	74	3	130	29	22	14	33	1.94
56697105--56697220	54	2.1	55	84	4	155	26	22	16	34	1.95
56701652--56702316	331	2.0	332	97	0	1269	30	13	23	32	1.93
56704140--56704180	12	3.4	13	80	16	52	19	26	4	48	1.69
56712139--56712390	42	6.1	42	87	1	312	20	19	23	36	1.95
56712397--56712427	16	1.9	16	100	0	62	19	19	9	51	1.74
56713083--56713426	144	2.4	137	84	8	361	45	3	9	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56713083--56713424	140	2.4	138	84	8	384	45	3	9	41	1.53
56714918--56714968	25	2.0	25	100	0	102	41	11	3	43	1.60
56714926--56714967	13	3.3	13	73	6	50	40	9	4	45	1.58
56718853--56718900	25	1.9	25	83	8	62	18	6	12	62	1.50
56719753--56719813	32	1.9	32	86	0	86	47	11	13	27	1.77
56728030--56728122	20	4.7	20	76	0	87	12	26	21	38	1.90
56728032--56728122	40	2.3	40	86	0	128	13	27	21	37	1.91
56729522--56729762	50	4.8	50	89	0	338	22	32	20	24	1.98
56735519--56735547	6	5.0	6	95	4	51	68	0	0	31	0.89
56735741--56735822	28	2.9	28	87	0	128	32	21	20	24	1.98
56736174--56736581	27	15.1	27	76	5	308	17	18	21	42	1.89
56742493--56742541	21	2.3	22	89	3	73	44	24	10	20	1.82
56743933--56743988	20	2.8	21	78	15	64	25	30	12	32	1.92
56743955--56744011	20	2.8	20	81	0	60	28	24	14	33	1.94
56748670--56748847	27	6.6	27	83	3	205	26	15	28	29	1.96
56748671--56748826	82	1.9	81	88	3	233	26	15	28	29	1.96
56748667--56748847	82	2.2	81	83	2	229	27	15	27	29	1.96
56751273--56751332	28	2.1	28	81	6	68	31	16	8	43	1.78
56752247--56752293	20	2.4	19	92	7	76	72	2	0	25	0.96
56752594--56752653	3	19.7	3	74	16	52	61	3	1	33	1.22
56752594--56752639	14	3.4	14	83	16	53	65	2	0	32	1.05
56752596--56752638	11	4.1	10	83	16	52	67	2	0	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56753202--56753284	41	2.0	41	97	0	157	44	22	4	27	1.73
56754036--56754488	44	10.6	44	66	12	167	26	22	21	29	1.99
56754080--56754694	83	7.3	84	68	11	270	28	22	20	28	1.99
56753960--56754714	127	6.0	127	92	1	1183	27	22	21	29	1.99
56753973--56754687	40	17.0	41	66	13	186	27	22	20	28	1.99
56760946--56761123	27	6.6	27	83	3	205	26	15	28	29	1.96
56760947--56761102	82	1.9	81	88	3	233	26	15	28	29	1.96
56760943--56761123	82	2.2	81	83	2	229	27	15	27	29	1.96
56765910--56765937	12	2.3	12	100	0	56	78	7	14	0	0.95
56768842--56769081	120	2.0	120	99	0	471	32	14	27	25	1.95
56771263--56771379	43	2.8	40	78	10	128	23	23	25	28	1.99
56771651--56771843	83	2.3	83	93	0	325	26	22	23	27	1.99
56771695--56771835	40	3.5	40	75	5	156	25	23	22	28	1.99
56787443--56787484	20	2.1	20	91	8	68	26	0	2	71	0.98
56787475--56787515	8	5.2	8	85	14	59	12	0	2	85	0.70
56787455--56787506	14	3.7	14	84	0	77	19	0	0	80	0.71
56787455--56787515	28	2.1	29	84	3	79	18	0	1	80	0.80
56787443--56787514	14	5.1	14	80	6	65	20	0	2	76	0.91
56791275--56791309	17	2.1	17	100	0	70	34	11	14	40	1.82
56803028--56803205	27	6.6	27	83	3	205	26	15	28	29	1.96
56803029--56803184	82	1.9	81	88	3	233	26	15	28	29	1.96
56803025--56803205	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56806139--56806189	14	3.6	14	78	7	50	74	1	0	23	0.92
56806147--56806193	20	2.3	20	82	7	60	72	0	0	27	0.85
56806158--56806202	19	2.3	18	85	14	63	71	2	0	26	0.98
56806158--56806202	20	2.3	20	88	11	67	71	2	0	26	0.98
56806507--56806544	18	2.1	19	90	5	60	68	2	0	28	1.03
56817697--56818038	171	2.0	171	100	0	684	26	19	16	36	1.93
56818188--56818233	21	2.2	21	92	0	74	36	32	13	17	1.88
56835790--56835867	25	3.2	25	76	10	79	20	24	20	34	1.96
56835871--56835941	27	2.6	26	91	4	106	19	22	26	30	1.98
56838379--56838411	16	2.1	16	88	5	50	45	6	0	48	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187