genome.fa.s15.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  68  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20059864--20060027	85	1.9	85	87	3	240	34	19	20	25	1.96
20059983--20060147	86	1.9	86	85	6	228	30	23	18	27	1.97
20060025--20060147	43	2.9	43	79	9	151	28	24	17	29	1.98
20060533--20060604	21	3.4	21	84	3	92	5	41	16	36	1.72
20063353--20063444	25	3.5	25	75	16	87	39	1	16	43	1.55
20063405--20063542	16	8.8	15	69	19	63	36	1	16	44	1.57
20063395--20063597	34	6.1	34	71	16	115	36	3	17	42	1.66
20063480--20063536	25	2.3	25	81	0	69	36	1	17	43	1.60
20063353--20063560	9	23.1	9	68	15	101	38	1	16	43	1.59
20063641--20063770	12	10.1	13	69	16	67	31	1	17	49	1.56
20063645--20063768	52	2.4	52	97	1	232	32	1	16	49	1.56
20063643--20063735	28	3.5	29	68	19	85	29	2	19	49	1.60
20063757--20063837	9	9.4	9	76	10	71	32	1	18	48	1.56
20063758--20063827	25	2.8	25	82	0	77	32	1	18	47	1.58
20063979--20064055	28	2.7	29	76	8	77	49	2	2	45	1.29
20064006--20064055	22	2.2	23	85	3	75	48	4	2	46	1.32
20063972--20064567	120	4.9	120	92	5	946	45	7	6	40	1.57
20064120--20064180	28	2.1	28	87	6	86	45	3	4	45	1.41
20064138--20064186	22	2.2	23	92	3	82	44	4	4	46	1.41
20066041--20066229	83	2.3	83	83	1	227	35	22	13	29	1.92
20067009--20067064	7	8.0	7	80	7	60	46	41	0	12	1.42
20067372--20067581	115	1.8	115	91	2	350	26	23	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20067921--20068235	107	3.0	107	87	3	442	32	19	17	30	1.95
20068387--20068435	24	2.0	24	84	7	64	65	6	6	22	1.38
20070895--20071007	44	2.6	45	82	4	149	30	21	19	28	1.97
20071469--20071498	14	2.1	15	93	6	53	40	20	6	33	1.78
20082673--20082990	107	3.0	107	88	2	455	31	18	17	31	1.95
20085038--20085231	98	2.0	99	88	5	295	25	22	19	32	1.97
20085137--20085615	228	2.1	228	90	0	760	25	23	17	32	1.97
20085137--20085604	114	4.1	115	86	1	645	26	23	17	32	1.97
20088863--20089049	96	1.9	96	83	0	239	34	10	21	32	1.88
20089010--20089176	49	3.4	49	86	0	235	31	15	23	29	1.95
20089010--20089201	49	3.9	49	86	0	231	31	16	22	29	1.96
20092647--20092683	16	2.3	16	95	0	65	29	5	21	43	1.75
20093843--20093900	28	2.1	28	100	0	116	46	0	20	32	1.51
20094146--20094818	114	5.9	113	85	2	843	23	22	26	28	1.99
20094146--20094821	342	2.0	339	88	1	994	23	22	26	28	1.99
20095054--20095087	14	2.3	15	95	5	61	38	0	26	35	1.57
20095110--20095180	14	5.2	14	86	5	74	22	0	43	33	1.54
20095135--20095197	33	1.9	33	90	0	99	22	0	47	30	1.51
20095122--20095181	7	8.9	7	83	7	79	20	0	50	30	1.49
20095121--20095197	21	3.8	20	76	10	66	23	0	46	29	1.52
20095122--20095196	26	2.8	26	78	11	73	22	0	46	30	1.52
20095275--20095328	14	3.9	14	80	0	63	20	1	48	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20095281--20095328	7	6.9	7	85	0	60	18	2	50	29	1.59
20095297--20095490	103	1.9	99	81	11	227	26	2	29	40	1.69
20095539--20095592	21	2.6	21	72	21	51	50	1	5	42	1.36
20095576--20095616	17	2.5	16	84	4	55	58	0	4	36	1.20
20095595--20095635	20	2.1	20	90	4	66	63	4	4	26	1.35
20095587--20095647	28	2.2	28	82	2	70	62	3	4	29	1.32
20095665--20095761	47	2.1	47	86	0	131	44	8	2	45	1.45
20097437--20097488	7	7.3	7	86	4	77	1	11	13	73	1.19
20097825--20097908	44	1.9	44	92	0	141	45	3	2	48	1.32
20098061--20098103	13	3.3	13	90	0	59	46	6	4	41	1.51
20098067--20098112	13	3.5	13	88	5	58	45	10	2	41	1.51
20098080--20098214	53	2.5	53	87	0	198	40	10	5	44	1.61
20098360--20098516	9	18.1	9	75	11	141	45	21	2	29	1.65
20098482--20098535	25	2.2	25	86	6	74	44	18	3	33	1.67
20098363--20098516	43	3.5	42	76	11	143	45	21	2	30	1.65
20099506--20099536	15	2.1	15	100	0	62	35	19	32	12	1.90
20101755--20101825	21	3.4	21	84	0	88	35	18	42	4	1.70
20102162--20102354	42	4.6	42	85	0	253	34	21	20	23	1.97
20108659--20108729	35	2.0	35	94	5	126	25	5	5	63	1.39
20113888--20113919	16	2.0	16	93	0	55	53	0	12	34	1.39
20117868--20118090	62	3.6	62	79	0	212	23	26	24	25	2.00
20125653--20127529	936	2.0	936	99	0	3747	36	16	13	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20134346--20134394	11	4.5	11	74	23	50	69	12	0	18	1.19
20134350--20134394	19	2.2	21	92	7	76	71	11	0	17	1.14
20134362--20134434	19	3.8	19	78	12	78	63	8	0	28	1.23
20138741--20138812	31	2.4	31	83	2	92	25	9	23	41	1.84
20144203--20144236	16	2.1	17	88	5	52	58	0	0	41	0.98
20144233--20144270	19	2.0	19	85	10	51	73	2	0	23	0.95
20144359--20144390	15	2.1	15	94	5	55	25	0	0	75	0.81
20149482--20149547	15	4.2	16	71	19	50	10	13	4	71	1.29
20149629--20149715	43	2.0	43	82	8	106	35	18	19	26	1.95
20150078--20150110	15	2.2	15	89	10	50	48	42	9	0	1.35
20151809--20151850	17	2.5	17	92	3	68	57	0	7	35	1.26
20156569--20156631	17	3.8	16	75	19	58	63	1	1	33	1.13
20161042--20161076	14	2.6	14	90	4	54	60	0	0	40	0.97
20161078--20161133	22	2.6	22	80	8	62	41	7	3	48	1.48
20162622--20162719	11	9.5	10	72	15	76	54	0	3	42	1.16
20162591--20162739	41	3.6	39	79	9	154	59	0	2	38	1.09
20162597--20162679	31	2.7	31	87	9	125	57	0	2	39	1.12
20162664--20162726	30	2.1	29	94	2	108	58	0	1	39	1.07
20162674--20162740	30	2.2	30	86	0	89	64	0	1	34	1.03
20165950--20165983	17	2.0	17	94	0	59	52	8	11	26	1.67
20166355--20166433	29	2.7	29	78	2	77	40	18	22	17	1.91
20168588--20169109	176	3.0	176	88	2	721	45	9	14	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20168958--20169240	151	1.9	150	82	7	360	49	8	11	30	1.68
20171597--20171666	30	2.4	30	85	2	88	22	14	18	44	1.86
20171733--20171759	13	2.1	13	100	0	54	14	29	33	22	1.94
20171906--20171956	22	2.3	22	100	0	102	27	33	0	39	1.57
20171928--20172040	51	2.2	51	93	0	199	28	29	0	42	1.56
20172041--20172105	30	2.2	30	94	5	114	33	0	0	66	0.92
20179077--20179423	126	2.8	125	95	2	619	31	21	17	29	1.96
20179446--20179471	9	2.9	9	100	0	52	57	30	0	11	1.34
20179644--20179703	29	2.1	29	84	6	79	48	16	11	23	1.79
20182527--20182683	80	2.0	80	100	0	314	45	24	3	26	1.70
20184019--20184130	34	2.9	41	79	17	157	33	8	8	50	1.63
20186191--20186293	4	25.5	4	92	2	134	25	5	26	42	1.77
20187247--20187300	22	2.5	21	75	6	54	50	0	3	46	1.19
20187292--20187328	6	6.2	6	100	0	74	32	0	0	67	0.91
20188091--20188128	19	2.0	20	89	5	60	26	42	5	26	1.76
20195713--20195756	17	2.7	17	83	16	58	40	11	2	45	1.53
20205407--20205482	23	3.3	23	85	7	109	30	23	23	22	1.99
20206167--20206264	46	2.1	47	94	1	171	42	20	0	36	1.52
20217776--20217852	13	5.9	13	80	6	93	27	7	24	40	1.82
20218333--20218371	19	2.1	20	86	13	57	71	17	10	0	1.12
20226102--20226175	21	3.5	21	75	12	71	43	17	21	17	1.88
20226261--20226308	24	2.0	24	95	0	87	20	27	8	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20228908--20229044	51	2.7	51	89	4	197	30	27	18	23	1.97
20231726--20231872	51	3.0	50	78	13	180	31	20	13	34	1.91
20231768--20231881	44	2.6	44	87	2	158	30	19	13	36	1.90
20233673--20233711	18	2.2	17	86	13	53	33	0	20	46	1.51
20233937--20234034	23	4.3	23	90	2	162	20	21	26	31	1.98
20233939--20234027	45	2.0	45	95	0	160	19	22	26	31	1.97
20241045--20241083	18	2.2	17	86	13	53	33	0	20	46	1.51
20241309--20241406	23	4.3	23	90	2	162	20	21	26	31	1.98
20241311--20241399	45	2.0	45	95	0	160	19	22	26	31	1.97
20245229--20245326	9	10.6	9	67	14	56	44	35	18	1	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187