genome.fa.s15.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  122  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36220074--36220125	16	3.4	16	70	20	56	36	26	5	30	1.80
36220064--36220126	30	2.1	30	100	0	126	38	25	6	30	1.81
36220898--36220929	6	5.3	6	96	0	55	50	31	0	18	1.48
36226130--36226179	3	16.7	3	95	0	91	34	2	0	64	1.05
36228427--36228583	45	3.4	45	83	4	190	40	8	3	47	1.52
36229601--36229653	27	1.9	28	81	11	65	20	11	13	54	1.69
36232106--36232194	27	3.3	27	90	0	133	33	22	19	24	1.97
36232106--36232207	27	3.8	26	85	6	116	34	20	20	24	1.97
36232200--36232307	23	4.6	23	89	3	135	21	4	24	50	1.68
36232479--36232713	32	7.4	32	77	0	184	21	19	22	37	1.94
36232476--36232685	64	3.3	64	78	1	233	20	18	23	37	1.94
36232705--36232769	22	3.0	21	69	13	51	20	16	15	47	1.82
36234308--36234378	34	2.1	33	81	2	79	29	5	15	49	1.67
36236368--36236547	96	1.9	96	82	2	227	35	13	18	32	1.91
36239661--36240261	299	2.0	299	97	0	1130	32	19	14	32	1.92
36242617--36242654	19	2.0	19	85	10	51	21	42	0	36	1.53
36245795--36245828	17	2.0	17	100	0	68	41	23	5	29	1.78
36256825--36256898	38	1.9	39	97	2	141	47	27	0	25	1.52
36257319--36257424	20	5.3	20	68	8	90	35	18	32	13	1.90
36257322--36257440	40	3.0	40	86	4	186	35	19	30	15	1.92
36260007--36260071	22	3.0	22	77	4	60	43	18	21	16	1.88
36260063--36260390	32	10.3	32	86	1	408	39	21	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36260396--36260449	26	2.1	26	85	0	72	35	25	22	16	1.95
36260437--36260500	27	2.4	27	85	12	80	31	23	25	20	1.98
36260667--36260798	27	4.9	27	87	0	194	25	21	18	34	1.96
36262870--36262925	30	1.9	28	85	7	76	42	0	0	57	0.99
36265268--36265612	51	6.8	50	80	4	343	29	25	14	30	1.95
36265269--36265612	102	3.4	102	87	2	433	29	25	14	29	1.95
36271647--36271708	16	3.9	16	72	8	63	35	8	11	45	1.70
36288179--36288253	27	2.8	26	72	25	66	65	10	5	18	1.42
36295443--36295530	44	2.0	44	95	0	158	32	36	4	26	1.77
36296317--36296578	143	1.8	143	82	3	339	22	20	23	33	1.97
36298151--36298237	3	30.0	3	75	19	69	68	1	4	25	1.15
36298154--36298241	35	2.5	35	81	10	90	69	1	4	25	1.14
36298205--36298252	25	1.9	25	82	0	60	72	0	4	22	1.01
36298410--36298453	22	2.0	23	86	4	63	31	2	61	4	1.28
36307997--36308338	51	6.7	50	80	6	361	28	15	25	30	1.96
36307997--36308335	102	3.3	101	88	2	450	28	15	25	30	1.96
36307992--36308338	153	2.3	152	82	3	412	29	14	25	30	1.95
36320069--36320122	26	2.1	26	96	0	99	33	18	20	27	1.96
36320630--36320661	15	2.1	15	100	0	64	46	12	31	9	1.73
36322078--36322137	25	2.4	25	83	10	70	23	6	0	70	1.11
36322091--36322143	6	8.5	6	78	15	54	22	3	0	73	0.99
36322092--36322143	19	2.7	20	80	17	56	23	3	0	73	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36333692--36333734	19	2.1	20	83	12	52	44	6	4	44	1.52
36337531--36337579	26	1.9	25	83	4	62	57	2	6	34	1.35
36342074--36342245	40	4.3	40	88	2	213	26	27	20	25	1.99
36342076--36342298	40	5.6	39	82	5	207	26	27	21	25	1.99
36342230--36342307	40	1.9	41	82	10	97	26	28	20	24	1.99
36362778--36362821	17	2.4	19	85	7	56	40	4	4	50	1.43
36363976--36364003	6	4.7	6	100	0	56	17	17	17	46	1.85
36365956--36365989	17	1.9	17	88	5	50	67	2	0	29	1.05
36365982--36366023	22	1.9	22	85	9	59	50	9	0	40	1.35
36366335--36366382	24	2.0	24	91	0	78	52	10	4	33	1.55
36368301--36368348	24	2.0	24	91	0	78	52	10	4	33	1.55
36370943--36370995	24	2.3	23	83	3	61	56	1	3	37	1.28
36377059--36377098	19	2.0	20	95	4	73	45	7	10	37	1.66
36378731--36378777	21	2.2	22	85	7	62	36	0	2	61	1.08
36378730--36378794	11	5.9	11	72	13	62	35	1	1	61	1.15
36380112--36380140	11	2.5	12	88	11	51	20	0	0	79	0.74
36386620--36387115	50	9.7	50	79	6	442	28	19	27	24	1.99
36386716--36387011	156	1.9	156	86	0	421	27	19	29	24	1.98
36386620--36387062	206	2.2	206	92	0	726	27	19	27	24	1.99
36389371--36389456	30	2.9	30	83	0	109	32	20	18	27	1.96
36394802--36394827	11	2.4	11	100	0	52	80	0	0	19	0.71
36395752--36395784	16	2.1	16	88	11	50	54	9	12	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36402982--36403013	17	1.9	16	93	6	55	21	6	3	68	1.26
36405860--36406047	50	3.6	50	79	4	178	28	20	26	24	1.99
36413695--36413795	35	2.9	35	78	0	112	22	17	15	43	1.87
36415016--36415048	11	3.1	11	91	4	50	66	0	24	9	1.20
36415157--36415341	101	1.8	102	88	3	284	23	16	28	31	1.96
36415157--36415339	51	3.6	50	78	6	172	23	16	27	31	1.96
36419579--36419618	21	1.9	21	85	10	55	52	22	7	17	1.69
36423556--36423585	3	10.0	3	92	0	51	63	0	3	33	1.11
36426510--36426552	22	2.0	22	90	0	68	46	0	0	53	1.00
36431772--36431931	57	2.8	57	88	0	248	25	31	13	28	1.94
36436805--36437200	99	4.0	99	95	0	693	47	11	12	29	1.75
36437241--36437303	31	2.0	31	87	6	92	33	11	11	44	1.75
36442674--36442910	76	3.1	76	93	2	384	54	7	9	28	1.59
36442674--36442910	78	3.1	77	93	3	388	54	7	9	28	1.59
36443095--36443158	33	1.9	33	96	0	119	23	15	46	14	1.82
36443095--36443179	33	2.6	33	88	0	107	24	12	47	15	1.81
36443333--36443371	12	3.2	12	81	0	51	5	43	23	28	1.75
36447826--36447877	24	2.2	24	100	0	104	32	21	17	28	1.96
36448075--36448235	29	5.4	29	75	9	137	23	22	26	27	1.99
36448255--36448331	36	2.1	36	85	0	100	37	19	12	29	1.89
36449676--36449753	31	2.6	30	76	10	79	43	19	8	28	1.81
36449922--36449992	31	2.3	31	78	9	81	45	19	11	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36449721--36450235	184	2.8	184	90	1	766	42	21	8	27	1.81
36464745--36464775	16	1.9	16	93	0	53	41	12	12	32	1.81
36468687--36468892	102	2.0	102	96	0	376	21	17	14	46	1.84
36472641--36472812	43	4.0	43	69	14	129	25	18	25	30	1.98
36476426--36476489	29	2.2	30	81	13	71	34	4	3	57	1.35
36476930--36477101	61	2.8	61	76	10	181	43	12	3	40	1.59
36482737--36482762	3	8.7	3	100	0	52	0	30	0	69	0.89
36487265--36487334	27	2.6	27	95	2	113	31	28	12	27	1.93
36487265--36487362	28	3.5	28	90	2	135	31	28	13	26	1.94
36491829--36492122	143	2.0	144	94	0	518	31	15	20	32	1.93
36500262--36500340	39	2.0	39	97	0	149	22	10	18	48	1.78
36511347--36511420	25	3.0	25	80	5	71	33	22	14	28	1.94
36512270--36512305	16	2.2	17	90	5	56	11	52	0	36	1.37
36515571--36515653	42	2.0	42	97	0	157	24	8	22	44	1.80
36518680--36518709	7	4.3	7	100	0	60	13	56	0	30	1.37
36522245--36522279	15	2.4	14	90	9	52	11	2	0	85	0.69
36524513--36524711	81	2.5	81	83	1	229	32	17	24	25	1.97
36528987--36529047	30	2.1	30	84	3	79	52	11	6	29	1.62
36536417--36536458	16	2.7	16	75	17	52	59	0	0	40	0.97
36539816--36539863	20	2.4	20	100	0	96	33	29	10	27	1.90
36542214--36542303	40	2.2	40	82	0	108	38	16	22	22	1.93
36555326--36555367	19	2.2	20	91	4	68	54	7	4	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36556132--36556326	59	3.3	59	89	8	203	46	10	5	37	1.61
36556166--36556335	59	2.9	59	98	0	322	45	10	4	39	1.60
36556346--36556387	16	2.6	16	92	0	66	42	7	2	47	1.43
36556361--36556416	23	2.5	23	82	2	69	44	1	1	51	1.22
36559090--36559145	29	2.0	28	86	10	78	39	19	7	33	1.79
36559320--36559363	14	3.1	14	86	3	61	59	4	0	36	1.18
36559324--36559407	25	3.2	25	75	11	78	54	2	1	41	1.21
36559824--36559894	37	1.9	36	82	2	88	32	0	5	61	1.19
36560630--36560696	30	2.3	30	82	12	77	59	4	0	35	1.18
36560636--36560705	29	2.2	33	75	14	76	62	4	0	32	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187