genome.fa.s15.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  132  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39269080--39269156	39	1.9	39	84	2	100	35	22	20	22	1.96
39269210--39269493	41	7.0	41	80	5	306	22	19	26	31	1.98
39269210--39269523	82	3.9	81	81	4	346	22	19	26	31	1.98
39269215--39269523	163	1.9	162	86	3	442	22	19	25	32	1.98
39269225--39269452	122	1.9	121	85	2	314	22	20	25	32	1.98
39269210--39269525	41	7.8	41	78	6	286	22	19	26	31	1.98
39270688--39270719	13	2.3	15	89	10	50	43	0	0	56	0.99
39272531--39272576	21	2.2	21	88	0	65	15	8	26	50	1.73
39274512--39274539	14	2.0	14	100	0	56	28	14	7	50	1.69
39274526--39274608	43	1.9	43	85	0	112	31	10	9	48	1.70
39275055--39275173	43	2.8	43	74	5	114	29	18	23	28	1.98
39282790--39283154	147	2.5	147	90	4	540	44	4	10	41	1.59
39283060--39283098	20	2.0	20	84	0	51	46	2	15	35	1.60
39282779--39283211	146	3.0	145	84	7	504	43	5	9	41	1.60
39283745--39283792	25	1.9	25	82	0	60	27	8	2	62	1.35
39285540--39285568	14	2.1	14	100	0	58	79	0	6	13	0.93
39285563--39285598	16	2.2	16	100	0	72	77	5	11	5	1.10
39291771--39291846	37	2.1	37	94	0	134	48	7	7	35	1.61
39292301--39292370	33	2.1	34	81	7	81	45	10	4	40	1.57
39303151--39303310	79	2.0	79	100	0	320	30	18	23	28	1.97
39303754--39303793	19	2.1	19	85	0	53	10	27	35	27	1.89
39304125--39304225	25	4.1	25	92	1	150	24	5	27	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39304323--39304374	27	1.9	27	84	7	70	19	28	21	30	1.97
39304356--39304409	26	2.1	26	92	0	90	12	22	29	35	1.91
39304366--39304421	26	2.2	26	83	0	67	10	23	33	32	1.89
39304412--39304600	32	6.0	32	76	3	168	20	21	23	34	1.97
39304413--39304601	62	3.0	61	77	6	171	20	22	23	33	1.97
39304628--39304682	22	2.5	22	76	5	58	18	23	16	41	1.89
39304896--39304973	33	2.3	34	84	6	97	24	26	25	23	2.00
39317855--39318158	40	7.6	40	94	1	459	24	20	28	26	1.99
39317816--39318158	80	4.3	80	90	1	458	23	20	28	27	1.99
39317816--39318158	120	2.9	119	88	3	476	23	20	28	27	1.99
39331764--39331958	50	3.9	49	80	7	214	27	16	26	29	1.97
39331762--39331956	101	1.9	99	87	6	284	27	16	26	29	1.97
39331774--39331990	101	2.2	100	82	6	251	29	15	25	29	1.96
39338315--39338498	79	2.3	81	82	11	222	25	27	22	25	2.00
39338315--39338498	40	4.6	41	83	12	199	25	27	22	25	2.00
39340693--39340793	27	3.7	27	84	5	114	18	24	20	35	1.95
39340931--39341004	31	2.4	31	83	2	94	17	14	14	52	1.75
39346095--39346125	16	1.9	16	93	0	53	35	22	0	41	1.54
39346092--39346131	20	2.0	20	85	0	53	37	22	0	40	1.54
39346364--39346571	55	3.8	53	83	6	240	24	24	16	35	1.95
39350848--39350937	45	2.0	45	95	0	162	24	21	14	40	1.90
39352385--39352561	67	2.6	67	80	8	184	32	14	32	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39354195--39354459	40	6.7	40	85	5	286	26	27	21	24	1.99
39354162--39354459	80	3.7	80	79	9	263	25	27	21	25	1.99
39354391--39354468	40	1.9	41	82	10	97	26	28	20	24	1.99
39364809--39364910	29	3.6	29	83	1	125	25	16	30	27	1.97
39364809--39364919	58	1.9	57	83	1	141	26	16	30	27	1.96
39377181--39377404	40	5.6	40	91	1	308	24	20	28	26	1.99
39377142--39377404	80	3.3	80	85	3	318	23	20	28	26	1.99
39377142--39377404	120	2.2	120	82	4	318	23	20	28	26	1.99
39380865--39380963	28	3.5	29	84	4	121	26	16	28	29	1.97
39385467--39385577	55	2.0	55	96	0	204	36	21	13	28	1.92
39388641--39388851	46	4.5	44	75	12	158	24	25	18	32	1.97
39388641--39388852	94	2.3	91	81	11	236	25	25	17	32	1.97
39389994--39390053	26	2.3	27	91	2	95	23	21	21	33	1.97
39394305--39394382	15	5.2	15	80	9	79	56	15	15	12	1.68
39394303--39394382	30	2.7	30	80	7	99	56	15	16	12	1.68
39397134--39397305	93	1.8	93	94	0	308	27	30	21	20	1.98
39397128--39397301	46	3.8	46	80	10	210	28	28	21	21	1.98
39401181--39401332	27	5.6	27	93	3	241	30	28	13	26	1.94
39401181--39401332	55	2.8	55	94	0	259	30	28	13	26	1.94
39405135--39405185	26	2.0	26	84	0	66	45	21	17	15	1.86
39405414--39405493	41	2.0	41	87	0	115	23	18	23	33	1.97
39405455--39405577	27	4.6	27	82	3	142	25	23	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39407786--39407854	27	2.6	27	83	0	75	42	21	15	20	1.89
39407810--39408023	27	8.1	27	78	10	219	40	18	13	27	1.88
39407810--39408023	54	4.1	54	80	11	248	40	18	13	27	1.88
39407830--39408014	102	1.8	103	91	1	309	40	17	14	27	1.88
39410547--39410608	24	2.6	24	87	5	90	20	38	22	17	1.93
39410843--39410899	27	2.1	27	93	6	98	24	17	21	36	1.94
39414349--39414400	22	2.4	22	93	0	86	9	30	28	30	1.89
39416988--39417016	13	2.2	13	100	0	58	34	0	20	44	1.52
39421918--39422085	56	3.0	56	87	6	225	27	14	24	33	1.94
39436590--39436685	40	2.4	39	81	6	104	29	23	14	32	1.94
39445326--39445440	29	4.0	29	84	6	137	28	28	14	27	1.95
39445317--39445432	57	2.0	57	83	3	144	27	31	15	25	1.96
39445498--39445533	18	2.1	18	89	5	56	19	33	22	25	1.97
39448795--39448828	18	1.9	18	88	5	52	29	8	20	41	1.82
39449932--39450015	29	2.9	29	83	1	107	27	29	17	25	1.98
39452967--39453141	49	3.5	49	83	3	242	27	18	24	29	1.98
39452960--39453154	49	3.9	49	81	2	237	27	18	24	28	1.98
39452962--39453149	100	1.9	100	94	0	331	27	19	23	29	1.98
39456984--39457209	40	5.7	40	87	4	271	25	20	26	26	1.99
39456984--39457242	120	2.2	120	81	7	287	26	20	26	26	1.99
39463275--39463498	40	5.6	40	89	3	317	24	22	26	26	2.00
39463274--39463498	81	2.8	79	89	4	326	24	22	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39470409--39470567	79	2.0	80	96	1	293	26	10	23	39	1.87
39473007--39473041	13	2.7	13	100	0	70	20	28	34	17	1.95
39480494--39480674	48	3.8	48	90	0	281	26	18	24	29	1.98
39480627--39480707	42	1.9	42	82	0	99	27	14	28	29	1.95
39482228--39482303	40	1.9	40	94	0	134	31	25	11	31	1.91
39482234--39482332	40	2.5	40	83	3	110	36	24	15	24	1.93
39486082--39486220	47	3.0	46	79	11	151	28	18	28	24	1.98
39491073--39491562	47	10.3	47	90	2	664	33	10	29	27	1.89
39492928--39493002	38	2.0	38	86	5	107	30	18	26	24	1.98
39493056--39493182	40	3.2	40	97	1	238	24	22	28	25	1.99
39493103--39493279	97	1.8	97	95	0	318	24	21	28	25	1.99
39493063--39493319	137	1.9	137	95	0	469	24	21	28	25	1.99
39493200--39493580	40	9.5	40	95	1	647	23	20	29	26	1.99
39518750--39518932	40	4.7	40	80	11	193	25	26	21	26	2.00
39518784--39518932	79	1.9	79	83	10	198	24	28	22	25	1.99
39520610--39520688	37	2.1	37	88	0	113	25	30	18	25	1.98
39520809--39522018	49	25.0	49	96	1	2124	29	30	8	30	1.88
39524563--39524672	6	17.8	6	72	19	84	49	14	17	19	1.80
39524563--39524672	19	5.9	18	70	21	84	49	14	17	19	1.80
39524558--39524672	31	3.7	31	88	3	160	48	14	16	20	1.81
39524817--39524895	26	3.0	26	94	5	133	31	21	27	18	1.97
39525142--39525253	27	4.2	27	83	2	145	27	22	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39525142--39525253	53	2.1	54	88	1	163	27	22	15	34	1.94
39525293--39525462	27	6.3	27	82	5	168	28	8	22	40	1.83
39525357--39525462	53	2.0	54	94	1	187	31	7	20	40	1.80
39538978--39539065	46	1.9	46	90	0	131	28	30	21	19	1.97
39545453--39545673	46	4.8	46	98	0	415	30	28	20	20	1.97
39553683--39553733	24	2.1	24	100	0	102	45	9	11	33	1.74
39554189--39554217	5	6.0	5	92	8	51	79	0	20	0	0.74
39554189--39554222	14	2.5	14	95	4	61	79	0	20	0	0.73
39557847--39557909	6	10.5	6	78	13	67	17	3	0	79	0.86
39557848--39557929	5	15.8	5	78	18	80	19	3	0	76	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187