genome.fa.s15.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  48  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14192601--14192686	23	3.9	22	77	8	95	19	20	22	37	1.95
14201412--14201451	11	3.6	11	93	0	62	22	22	7	47	1.76
14201457--14201500	12	3.8	12	81	3	54	40	0	0	59	0.98
14202394--14202436	21	2.1	20	83	12	52	41	0	6	51	1.29
14202601--14202626	7	3.7	7	100	0	52	26	0	15	57	1.38
14203277--14203312	18	2.0	18	94	0	63	25	27	8	38	1.84
14203838--14204400	45	12.6	42	77	16	432	49	24	0	26	1.54
14203897--14203925	14	2.0	15	93	6	51	51	27	0	20	1.47
14203897--14203981	38	2.2	38	89	4	136	50	22	1	25	1.56
14203838--14204401	23	25.1	22	77	16	522	49	24	0	26	1.55
14203838--14204401	68	8.4	65	77	15	505	49	24	0	26	1.55
14204511--14204702	61	3.2	61	66	16	177	39	9	8	42	1.68
14204395--14204753	116	3.1	116	96	1	648	39	9	6	44	1.63
14207763--14208114	125	2.8	125	94	0	614	33	21	16	28	1.95
14221299--14221365	28	2.4	28	95	5	118	68	0	2	28	1.04
14221350--14221415	11	6.4	11	77	12	61	56	0	6	37	1.24
14221348--14221376	12	2.3	13	88	11	51	58	0	6	34	1.25
14221321--14221424	40	2.6	40	88	7	158	61	0	5	32	1.20
14222145--14222217	33	2.2	33	85	7	94	43	16	9	30	1.80
14228567--14228625	28	2.1	27	96	3	109	72	0	1	25	0.93
14228567--14228625	27	2.1	28	93	3	102	72	0	1	25	0.93
14228557--14228604	20	2.5	19	83	12	62	72	0	2	25	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14231475--14231540	26	2.5	26	92	0	105	25	27	25	21	1.99
14235547--14235631	42	2.0	42	97	0	161	32	14	35	17	1.90
14238497--14238563	33	2.0	33	85	5	91	32	8	23	34	1.86
14240967--14241033	33	2.0	33	85	5	91	32	8	23	34	1.86
14242365--14242403	20	2.0	20	84	0	51	25	10	15	48	1.76
14247707--14247839	69	1.9	69	98	0	257	29	18	14	38	1.90
14247997--14248043	22	2.2	20	85	7	58	61	0	0	38	0.96
14250434--14250485	3	17.3	3	95	0	95	65	0	34	0	0.93
14259998--14260038	20	2.1	19	86	4	55	36	7	9	46	1.65
14262595--14262638	19	2.3	19	88	4	61	56	2	4	36	1.32
14262608--14262647	19	2.2	19	90	4	64	62	0	0	37	0.95
14262640--14262693	18	3.0	18	72	0	54	53	5	0	40	1.24
14264115--14264145	2	15.5	2	100	0	62	48	51	0	0	1.00
14267819--14267920	34	3.0	34	77	0	105	37	14	17	30	1.90
14270658--14270823	39	4.3	39	87	0	224	15	31	18	34	1.92
14270699--14270802	20	5.3	20	71	13	90	15	34	18	31	1.92
14282224--14282259	11	3.3	11	88	0	54	80	5	0	13	0.88
14287541--14287565	3	8.3	3	100	0	50	68	0	0	32	0.90
14295379--14295474	45	2.1	46	84	5	124	57	11	6	25	1.57
14295463--14295499	7	5.4	7	93	6	67	86	0	0	13	0.57
14295850--14295906	30	1.9	30	85	7	80	1	22	3	71	1.10
14295873--14295925	24	2.2	25	83	6	65	1	26	3	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14297092--14297144	18	2.9	18	80	2	61	41	45	1	11	1.51
14297248--14297332	9	9.4	9	82	0	107	24	8	22	44	1.80
14304152--14304176	6	4.2	6	100	0	50	84	0	0	16	0.63
14304222--14304274	16	3.4	16	74	10	56	52	7	3	35	1.48
14304939--14304993	28	2.0	28	82	7	67	56	10	9	23	1.62
14305587--14306132	217	2.5	216	88	1	806	28	23	20	27	1.99
14305929--14306047	45	2.7	45	83	8	138	25	28	20	26	1.99
14312153--14312698	217	2.5	217	89	1	826	28	22	20	27	1.99
14312190--14312613	44	9.7	45	69	15	194	28	23	20	28	1.99
14317772--14317823	27	2.0	26	84	3	68	3	32	9	53	1.51
14322259--14323312	527	2.0	527	100	0	2108	29	26	16	28	1.97
14325392--14325444	16	3.4	16	74	10	56	52	7	3	35	1.48
14326086--14326140	28	2.0	28	85	7	76	56	9	10	23	1.62
14340227--14340267	13	3.4	13	80	19	61	24	4	4	65	1.32
14340219--14340267	23	2.1	23	100	0	98	24	4	4	67	1.26
14340406--14340459	28	2.0	27	82	10	65	44	3	5	46	1.44
14340791--14340815	12	2.1	12	100	0	50	52	8	0	40	1.31
14342684--14342714	15	2.1	15	100	0	62	67	0	0	32	0.91
14343755--14343789	18	1.9	18	100	0	70	34	17	17	31	1.93
14343998--14344049	9	5.8	9	95	0	86	23	9	28	38	1.86
14344210--14344234	12	2.1	12	100	0	50	16	24	36	24	1.94
14355582--14355652	31	2.3	31	95	0	124	38	14	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14355850--14355880	15	2.1	15	93	0	53	19	9	6	64	1.45
14370188--14370216	9	3.0	10	90	10	51	72	0	0	27	0.85
14381871--14381915	17	2.5	18	85	7	56	46	0	0	53	1.00
14381870--14381915	18	2.6	17	83	10	56	47	0	0	52	1.00
14385850--14385882	17	1.9	18	88	11	52	48	0	9	42	1.35
14387967--14388002	5	7.2	5	100	0	72	19	0	0	80	0.71
14388944--14388983	14	2.6	16	92	7	66	55	15	0	30	1.41
14389605--14389678	24	3.1	24	76	7	71	18	31	1	48	1.57
14392876--14393236	41	8.8	41	82	4	404	23	27	20	29	1.99
14392876--14393244	123	3.0	123	86	0	486	23	27	20	29	1.99
14393834--14394336	78	6.5	78	89	5	706	43	13	4	38	1.64
14399569--14399621	23	2.4	22	76	20	56	9	18	1	69	1.25
14401986--14402021	12	3.0	12	91	0	54	83	0	0	16	0.65
14401991--14402022	12	2.7	12	95	0	55	87	0	0	12	0.54
14403619--14403733	44	2.7	44	80	8	128	31	26	18	24	1.97
14403581--14403752	43	4.0	43	72	13	147	30	26	17	25	1.97
14410788--14410954	43	3.9	43	75	7	142	32	26	16	24	1.96
14414637--14414688	15	3.6	15	80	12	56	44	0	1	53	1.11
14414575--14414804	120	1.9	120	98	0	442	41	1	6	50	1.38
14414585--14414772	61	3.1	61	70	14	199	42	1	6	48	1.39
14414933--14415042	45	2.6	43	76	11	111	32	28	5	33	1.80
14415023--14415074	16	3.2	16	97	0	95	36	36	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14416321--14416390	6	11.7	6	100	0	140	67	0	0	32	0.91
14417596--14417641	7	6.1	7	80	14	56	41	0	41	17	1.49
14417572--14417641	31	2.3	31	92	5	115	42	0	40	17	1.49
14417603--14417658	24	2.3	24	93	6	96	41	0	41	17	1.50
14417589--14417634	17	2.9	17	78	15	62	43	0	41	15	1.46
14418522--14418663	71	2.0	71	92	0	239	42	14	11	31	1.80
14419484--14419575	37	2.5	35	77	15	87	53	5	2	39	1.36
14419443--14419575	48	2.6	50	77	10	130	51	6	2	39	1.39
14421147--14421177	16	1.9	16	93	0	53	74	6	9	9	1.23
14421278--14421346	24	2.9	24	77	0	75	46	2	37	13	1.58
14421453--14421496	18	2.4	18	81	7	54	20	36	2	40	1.65
14422634--14422678	21	2.1	21	83	4	54	64	8	0	26	1.23
14426329--14426355	11	2.5	11	100	0	54	92	0	7	0	0.38
14453111--14453341	27	8.6	27	85	0	302	35	18	21	24	1.95
14453381--14453463	24	3.5	24	75	4	71	21	10	22	44	1.83
14453634--14453772	32	4.4	32	89	0	190	20	20	19	38	1.93
14453764--14453827	22	2.9	21	74	4	56	18	21	15	43	1.87
14457129--14457786	342	1.9	336	82	5	824	36	12	15	35	1.85
14467447--14467613	86	2.0	85	91	1	271	30	6	24	38	1.81
14468369--14468422	25	2.2	25	89	0	81	35	16	14	33	1.90
14468403--14468481	25	3.2	25	73	7	88	30	12	24	32	1.92
14470327--14470352	2	13.0	2	100	0	52	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14489231--14489271	6	6.8	6	97	0	73	0	46	0	53	1.00
14504073--14504100	5	5.6	5	100	0	56	17	0	0	82	0.68
14510738--14510889	29	5.2	29	83	0	151	26	26	11	36	1.90
14518486--14518604	20	5.9	20	73	7	89	8	27	21	42	1.81
14518486--14518601	60	1.9	60	80	3	135	8	28	20	42	1.82
14518578--14518623	22	2.2	20	84	7	56	10	26	19	43	1.84
14528098--14528130	16	2.0	17	88	5	50	57	0	3	39	1.14
14529479--14529531	21	2.6	21	84	3	72	32	26	16	24	1.97
14539884--14539943	30	1.9	33	83	10	81	56	0	3	40	1.16
14540591--14540643	18	3.0	18	73	13	56	64	3	7	24	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187