genome.fa.s15.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  177  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54183229--54183290	31	2.0	31	96	0	115	32	9	14	43	1.78
54183825--54183886	9	6.8	9	73	10	54	74	11	14	0	1.08
54183827--54183886	27	2.3	25	88	8	84	73	11	15	0	1.10
54184436--54184497	31	2.0	31	100	0	124	41	16	9	32	1.80
54185251--54185281	16	1.9	16	93	0	53	32	25	3	38	1.72
54185741--54185947	107	1.9	107	92	1	344	32	19	18	29	1.96
54186602--54186636	15	2.4	15	90	4	54	57	0	8	34	1.29
54187529--54187553	13	1.9	13	100	0	50	68	0	8	24	1.16
54187933--54187970	17	2.2	17	90	9	60	5	0	28	65	1.14
54188206--54188347	44	3.1	44	72	18	126	27	17	22	32	1.96
54188924--54189119	108	1.8	108	100	0	392	47	10	16	25	1.79
54189448--54189487	19	2.2	17	91	8	62	0	17	2	80	0.83
54189464--54189501	12	3.2	12	85	10	51	0	13	5	81	0.85
54189446--54189501	24	2.3	24	81	9	60	0	16	5	78	0.92
54189935--54189983	10	4.7	10	78	9	53	0	6	12	81	0.86
54194151--54194192	22	2.0	21	95	4	75	7	35	9	47	1.64
54195963--54196001	20	2.0	20	85	10	53	58	2	0	38	1.12
54198115--54198141	11	2.5	11	100	0	54	22	7	18	51	1.70
54199538--54199745	91	2.3	91	92	0	335	45	3	4	46	1.39
54199660--54199720	28	2.2	28	85	5	81	45	0	3	50	1.17
54199578--54199720	44	3.2	43	69	20	121	46	2	3	48	1.31
54199772--54200080	66	5.2	57	66	20	184	42	2	4	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54199761--54200173	120	3.4	120	96	0	738	42	2	4	50	1.35
54199886--54200057	15	11.6	15	67	21	62	43	0	4	51	1.27
54200135--54200176	15	2.7	16	82	14	52	45	0	2	52	1.13
54200126--54200167	15	2.9	15	82	10	52	47	0	0	52	1.00
54200390--54200443	16	3.4	16	89	0	81	31	33	0	35	1.58
54202841--54202885	13	3.4	14	79	14	51	62	0	2	35	1.08
54224312--54224375	24	2.6	24	73	7	58	73	4	12	9	1.23
54227768--54228038	135	2.0	134	97	0	515	25	18	21	35	1.96
54228578--54228673	45	2.1	45	86	9	133	45	37	2	14	1.57
54228578--54228673	23	4.2	23	80	10	117	45	37	2	14	1.57
54228736--54228829	41	2.3	41	76	10	95	38	23	2	36	1.67
54233105--54233200	50	1.9	50	89	0	147	26	25	31	17	1.97
54234092--54234124	17	1.9	17	88	11	50	27	0	12	60	1.32
54240843--54240886	22	2.0	23	81	4	54	22	6	15	54	1.65
54241140--54241179	8	5.0	8	90	0	62	30	10	35	25	1.88
54242909--54242950	16	2.4	17	84	15	59	47	11	14	26	1.78
54244265--54244439	30	6.0	30	73	10	139	36	17	17	29	1.92
54244270--54244459	57	3.3	59	77	10	169	38	17	17	26	1.92
54244265--54244467	30	7.0	29	75	7	107	37	17	16	28	1.92
54252178--54252235	27	2.1	27	80	0	62	39	18	13	27	1.89
54271301--54271392	39	2.3	39	88	5	132	25	28	22	23	2.00
54271282--54271445	40	4.1	40	78	10	167	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54272624--54272743	56	2.1	56	98	0	231	22	23	9	45	1.81
54279884--54279945	27	2.3	27	78	18	74	43	3	0	53	1.17
54292096--54292148	26	2.0	27	88	3	81	37	20	5	35	1.77
54292965--54293016	10	5.0	10	77	9	50	78	1	13	5	1.01
54295020--54295058	20	1.9	20	85	15	53	33	0	15	51	1.44
54295012--54295066	22	2.5	21	75	19	51	32	0	16	50	1.45
54295207--54295290	24	3.5	23	78	13	80	19	28	20	32	1.96
54295365--54295436	25	2.8	25	79	10	83	22	26	16	34	1.95
54295365--54295473	27	4.2	26	79	6	105	22	24	16	36	1.94
54295351--54295462	52	2.2	53	85	4	156	23	23	16	36	1.94
54295365--54295473	52	2.1	52	92	0	182	22	24	16	36	1.94
54295501--54295575	25	2.9	25	78	7	71	21	25	22	30	1.99
54297243--54297282	21	1.9	21	94	0	71	40	0	2	57	1.12
54310347--54310428	34	2.4	34	82	8	87	53	2	3	40	1.32
54311061--54311120	18	3.2	18	69	17	50	35	6	5	53	1.49
54311060--54311138	38	2.1	38	87	0	113	34	7	5	53	1.51
54321157--54321342	41	4.5	41	89	1	221	26	17	26	30	1.97
54321324--54321424	41	2.5	41	91	0	166	27	19	29	22	1.98
54322768--54322801	17	2.1	17	88	5	52	50	0	17	32	1.47
54323672--54323771	42	2.4	42	94	0	173	35	10	28	27	1.89
54327670--54328108	215	2.0	217	94	0	765	30	21	13	34	1.92
54328111--54328270	33	4.8	34	70	11	123	28	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54328077--54328295	101	2.2	101	88	0	321	27	25	15	31	1.96
54335451--54335709	101	2.6	101	79	3	265	27	24	16	31	1.97
54344260--54344360	28	3.7	26	70	19	71	69	4	3	21	1.24
54344255--54344382	55	2.3	56	89	2	186	68	4	3	23	1.23
54344289--54344356	11	6.2	11	70	13	50	72	2	1	23	1.07
54344289--54344382	28	3.4	28	72	19	88	71	4	1	23	1.10
54345506--54345537	12	2.6	13	90	9	50	6	43	25	25	1.77
54352826--54352882	27	2.1	27	87	6	80	26	5	0	68	1.11
54352898--54352930	12	2.8	12	100	0	66	24	6	6	63	1.40
54380116--54380370	44	5.9	44	86	6	351	41	14	23	21	1.89
54380116--54380370	86	2.9	86	91	2	395	41	14	23	21	1.89
54380117--54380370	130	2.0	129	87	4	368	40	14	23	21	1.89
54380415--54380461	18	2.8	18	78	18	57	4	29	38	27	1.76
54381999--54382054	22	2.5	22	97	2	103	28	32	0	39	1.57
54382026--54382141	51	2.3	51	95	0	205	28	25	0	45	1.54
54382767--54382872	53	2.0	53	98	0	203	26	31	9	33	1.88
54383747--54383781	18	1.9	18	94	0	61	25	31	8	34	1.86
54387207--54387573	125	2.9	124	84	2	502	33	20	14	30	1.93
54389933--54390133	42	4.5	42	76	15	199	23	7	26	42	1.81
54389810--54390112	96	3.2	96	87	3	438	26	6	24	42	1.79
54390035--54390145	42	2.6	42	88	2	152	19	10	24	45	1.82
54392085--54392179	24	4.0	24	90	2	138	38	5	7	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54393765--54393821	25	2.3	25	84	0	69	40	12	5	42	1.65
54394068--54394159	23	3.9	23	88	4	121	29	20	25	25	1.99
54401843--54401930	30	2.6	34	73	24	89	50	1	0	48	1.08
54401857--54401926	30	2.3	31	88	9	101	47	1	0	51	1.09
54402209--54402274	30	2.3	27	80	12	78	40	3	6	50	1.43
54405004--54405047	20	2.3	19	80	7	52	52	2	11	34	1.50
54405549--54405630	24	3.4	24	70	12	60	14	30	21	32	1.94
54407343--54407390	22	2.2	22	85	3	62	20	6	12	60	1.54
54419916--54420169	125	2.0	125	93	0	436	37	21	16	24	1.93
54423459--54423490	17	1.9	17	93	6	57	50	0	3	46	1.17
54440351--54440422	35	2.1	35	97	0	135	40	9	13	36	1.78
54443899--54443929	6	5.2	6	100	0	62	0	0	83	16	0.64
54443983--54444053	24	3.0	23	74	13	72	38	2	2	56	1.29
54444192--54444288	50	1.9	51	83	6	126	37	5	15	42	1.69
54446042--54446078	16	2.3	17	81	13	51	62	8	2	27	1.37
54447510--54447561	26	2.0	26	85	7	70	26	19	21	32	1.97
54448475--54448711	27	8.6	27	78	6	181	55	5	16	23	1.61
54448453--54448913	28	16.2	28	73	11	206	52	5	18	23	1.66
54448459--54448713	53	4.6	53	77	8	181	55	5	15	23	1.60
54448668--54448748	39	2.1	39	92	0	135	55	6	20	17	1.63
54448625--54448806	95	1.9	96	86	1	258	54	6	17	22	1.64
54448558--54448862	150	2.0	150	81	5	348	53	5	18	21	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54448737--54448881	55	2.6	55	82	7	168	51	5	21	22	1.68
54448727--54448881	83	1.9	83	83	2	204	51	5	20	22	1.68
54448721--54448912	83	2.3	83	78	3	197	51	6	18	23	1.69
54449990--54450036	20	2.4	20	82	3	60	44	0	2	53	1.12
54450272--54450314	13	3.3	13	78	12	52	34	23	0	41	1.55
54452075--54452112	20	2.0	20	94	5	69	52	5	0	42	1.24
54452237--54452282	21	2.0	24	84	12	62	47	4	8	39	1.54
54455475--54455502	5	5.6	5	100	0	56	39	21	0	39	1.54
54455696--54455743	25	1.9	25	82	0	60	37	14	22	25	1.92
54455690--54455806	48	2.4	49	77	11	123	35	18	24	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187