genome.fa.s15.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  47  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13842840--13842887	18	2.6	18	90	6	69	18	25	4	52	1.63
13860045--13860090	20	2.3	20	92	0	74	52	15	4	28	1.61
13860053--13860096	20	2.2	20	83	0	52	52	9	4	34	1.54
13864498--13864536	20	2.0	20	94	0	69	48	15	5	30	1.66
13864499--13864543	20	2.2	20	88	0	63	55	15	4	24	1.59
13875678--13875724	16	3.0	15	81	9	58	63	0	0	36	0.94
13880522--13880581	28	2.1	28	100	0	120	26	23	23	26	2.00
13899741--13899783	21	2.0	21	82	8	52	23	44	6	25	1.78
13901522--13901583	5	12.0	5	73	13	54	75	4	1	17	1.05
13901522--13901583	16	4.0	15	75	10	54	75	4	1	17	1.05
13911533--13911563	12	2.7	12	95	5	55	32	0	19	48	1.49
13914824--13914853	16	1.9	15	93	6	51	66	0	3	30	1.07
13916630--13916761	50	2.6	50	77	9	117	32	18	18	30	1.95
13916498--13916846	188	1.9	189	82	6	449	29	19	18	32	1.96
13916570--13917224	138	4.7	139	81	7	593	28	20	18	31	1.96
13916714--13917254	276	2.0	275	82	4	660	28	21	18	32	1.97
13917006--13917441	182	2.4	182	81	3	522	27	22	18	31	1.97
13917094--13917397	94	3.3	94	69	12	259	27	21	19	31	1.97
13916731--13917428	44	15.3	44	69	16	300	27	21	18	32	1.97
13920759--13920847	43	2.1	43	91	0	142	17	25	19	37	1.94
13929093--13929137	21	2.3	19	84	7	54	71	6	2	20	1.20
13934797--13934838	21	2.0	21	100	0	84	52	14	4	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13935243--13935285	22	2.0	22	95	0	77	44	16	9	30	1.79
13937837--13937886	18	2.7	19	74	17	52	74	0	10	16	1.08
13941868--13941935	33	2.0	34	85	2	93	32	2	2	61	1.26
13945827--13945861	3	11.7	3	100	0	70	68	0	31	0	0.90
13952798--13953062	103	2.6	104	90	3	417	29	29	20	19	1.97
13953390--13953454	30	2.2	29	81	8	76	30	27	6	35	1.81
13953397--13953454	30	1.9	30	85	0	80	31	24	6	37	1.82
13960291--13960555	103	2.6	104	90	3	417	29	29	20	19	1.97
13960883--13960947	30	2.2	29	81	8	76	30	27	6	35	1.81
13960890--13960947	30	1.9	30	85	0	80	31	24	6	37	1.82
13964511--13964544	15	2.3	15	100	0	68	44	5	0	50	1.26
13966026--13966050	12	2.1	12	100	0	50	48	8	0	44	1.32
13973219--13973313	45	2.1	45	92	0	163	26	18	24	30	1.98
13999124--13999153	13	2.3	13	94	0	51	60	20	16	3	1.50
14003595--14003643	18	2.6	18	83	6	62	48	2	4	44	1.33
14003725--14003773	18	2.6	18	83	6	62	48	2	4	44	1.33
14003855--14003903	18	2.6	18	83	6	62	48	2	4	44	1.33
14003520--14003907	130	3.0	130	98	0	753	38	8	10	42	1.70
14004513--14004542	14	2.1	14	93	0	51	16	43	0	40	1.48
14005094--14005366	137	2.0	138	81	3	327	32	27	17	21	1.96
14012666--14012722	26	2.2	27	87	6	82	40	7	19	33	1.78
14019013--14019079	31	2.2	31	83	0	80	35	4	14	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14023007--14023031	13	1.9	13	100	0	50	40	4	8	48	1.51
14027377--14027464	42	2.1	42	93	0	149	36	15	23	23	1.94
14029391--14029427	18	2.1	18	100	0	74	27	29	16	27	1.97
14033313--14033347	5	7.0	5	100	0	70	80	0	0	20	0.72
14038133--14038166	17	2.1	16	94	5	59	85	0	14	0	0.60
14043859--14043997	69	2.0	69	94	2	244	33	10	26	29	1.89
14046496--14046549	21	2.6	20	88	5	72	74	3	5	16	1.16
14046516--14046545	15	1.9	16	93	6	53	73	6	3	16	1.18
14046496--14046560	21	3.2	20	82	8	69	73	3	4	18	1.13
14056506--14057399	41	21.8	41	99	0	1754	31	22	19	26	1.98
14064630--14064693	33	2.0	32	87	3	92	39	23	9	28	1.86
14064908--14065063	41	3.8	41	88	6	226	28	22	19	28	1.98
14071759--14071856	33	2.9	33	84	7	108	36	22	10	30	1.87
14072071--14072463	41	9.6	41	99	0	777	26	22	21	29	1.99
14081381--14081424	13	3.5	13	84	6	54	52	9	2	36	1.46
14081381--14081430	25	2.0	26	84	11	68	54	8	4	34	1.49
14084938--14085038	18	5.1	19	70	20	73	58	0	1	39	1.09
14084962--14085030	11	6.9	10	75	18	54	56	0	1	42	1.08
14084954--14084991	11	3.5	11	85	7	51	52	0	2	44	1.14
14084974--14085058	17	4.8	17	71	16	64	61	0	1	37	1.04
14084938--14085045	39	2.7	38	87	9	137	59	0	1	38	1.08
14085016--14085058	16	2.6	16	81	3	50	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14085065--14085095	5	6.0	5	92	7	53	0	41	58	0	0.98
14088726--14088789	29	2.2	29	91	0	101	31	3	17	48	1.62
14088725--14088796	31	2.4	29	82	11	83	29	4	19	47	1.68
14089543--14089589	17	2.8	17	83	6	60	31	8	14	44	1.76
14089578--14089650	18	4.2	17	78	13	67	21	6	20	50	1.71
14092355--14092714	27	13.4	27	86	1	445	45	20	14	18	1.85
14096571--14096638	19	3.7	18	81	14	68	35	0	0	64	0.94
14096591--14096638	6	8.0	6	78	17	55	35	0	0	64	0.94
14099812--14099844	17	1.9	18	88	11	52	45	9	0	45	1.35
14100415--14100448	17	2.0	17	100	0	68	47	29	17	5	1.71
14101589--14101621	5	6.6	5	92	0	57	39	21	15	24	1.91
14102382--14102433	27	1.9	27	88	0	77	48	0	30	21	1.51
14102646--14102682	9	4.1	9	92	0	65	29	10	13	45	1.77
14102736--14102775	9	4.4	9	90	0	62	37	22	10	30	1.87
14115317--14115592	107	2.6	107	81	2	295	30	23	19	26	1.98
14117878--14117907	13	2.3	13	94	0	51	50	6	13	30	1.67
14119720--14119754	18	2.0	17	88	5	52	45	0	0	54	0.99
14119911--14120007	45	2.2	45	85	5	126	32	28	6	31	1.82
14119987--14120019	16	2.1	16	100	0	66	21	36	6	36	1.78
14129881--14129927	24	1.9	25	86	4	69	48	4	0	46	1.21
14129879--14129937	24	2.3	25	80	8	66	47	5	0	47	1.24
14140808--14140837	14	2.1	14	100	0	60	33	6	10	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14140999--14141058	29	2.1	29	100	0	120	35	11	23	30	1.90
14144234--14144276	21	2.0	21	91	8	70	34	0	4	60	1.17
14144229--14144286	21	2.5	22	81	18	66	37	1	6	53	1.38
14144293--14144338	18	2.6	18	86	3	58	43	0	2	54	1.12
14144241--14144414	59	2.9	59	72	11	176	40	1	4	53	1.29
14144324--14144543	102	2.2	102	94	0	386	41	2	4	52	1.33
14144259--14144442	64	3.1	57	73	19	187	42	1	4	52	1.28
14144234--14144460	119	1.9	119	88	4	345	42	0	3	52	1.26
14144720--14144812	45	2.1	44	90	9	145	34	29	4	32	1.77
14144794--14144831	16	2.4	16	95	0	67	26	34	2	36	1.71
14144874--14144916	16	2.7	16	96	0	77	41	2	32	23	1.67
14144874--14144924	16	3.2	15	86	10	66	39	3	31	25	1.74
14144906--14144998	44	2.1	44	88	6	134	31	5	29	34	1.80
14145544--14145592	24	2.0	24	96	0	89	26	16	18	38	1.91
14146595--14146655	24	2.4	26	81	10	90	52	16	8	22	1.70
14149898--14149958	24	2.7	23	78	12	63	31	4	1	62	1.26
14152416--14152449	18	2.0	16	88	11	50	32	8	0	58	1.29
14154531--14154580	12	4.4	11	80	14	57	20	2	0	78	0.86
14154528--14154580	22	2.4	22	81	9	63	20	1	0	77	0.87
14154543--14154586	22	2.0	22	82	13	54	18	4	2	75	1.09
14166499--14166791	45	6.7	45	68	13	155	28	20	23	27	1.99
14166413--14166791	44	8.7	44	68	14	164	28	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14166499--14166967	89	5.4	87	68	12	341	29	18	23	28	1.98
14166499--14167092	174	3.4	174	86	3	778	29	19	22	28	1.98
14168455--14168484	14	2.2	13	94	5	51	16	0	0	83	0.65
14169039--14169080	19	2.2	20	82	4	50	30	7	11	50	1.66
14171595--14171626	16	1.9	17	93	6	57	53	0	6	40	1.26
14176222--14176266	22	2.2	20	88	8	63	64	2	4	28	1.25
14179877--14180188	168	1.8	169	84	4	423	33	15	14	37	1.87
14189103--14189137	14	2.5	14	90	0	52	28	17	0	54	1.43
14190681--14190726	19	2.3	20	78	14	51	43	2	15	39	1.59
14191195--14191219	6	4.2	6	100	0	50	84	0	16	0	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187