genome.fa.s15.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  121  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35865723--35865773	11	4.6	11	81	16	52	7	9	5	76	1.15
35865719--35865774	10	5.2	11	79	14	55	8	12	7	71	1.30
35865746--35865781	10	3.2	12	85	14	51	13	5	8	72	1.27
35868011--35868448	223	2.0	223	98	0	849	27	26	20	25	1.99
35873363--35873567	27	7.6	27	84	4	189	28	28	15	27	1.96
35873363--35873566	54	3.8	54	81	6	225	28	28	15	26	1.96
35873362--35873566	109	1.9	109	84	4	272	28	28	15	26	1.96
35876555--35876618	27	2.4	28	81	7	78	35	9	26	28	1.87
35876783--35876811	5	5.8	5	100	0	58	58	0	0	41	0.98
35876837--35876874	19	2.1	18	85	9	51	26	0	5	68	1.11
35877452--35877492	11	3.7	11	87	9	57	0	9	2	87	0.62
35877452--35877492	22	1.9	21	90	5	64	0	9	2	87	0.62
35878424--35878498	29	2.6	29	80	6	89	28	20	32	20	1.97
35878822--35878988	84	2.0	85	84	5	223	40	9	19	29	1.84
35882188--35882354	59	2.8	58	85	3	217	52	8	5	33	1.56
35882717--35882752	18	2.0	18	94	0	63	41	5	27	25	1.77
35889443--35889479	8	4.8	8	96	3	67	0	24	0	75	0.80
35900563--35900595	17	2.0	17	94	5	59	48	0	0	51	1.00
35900552--35900633	19	4.2	20	73	21	77	41	0	1	57	1.06
35905090--35905114	13	1.9	13	100	0	50	56	12	0	32	1.36
35905939--35905991	21	2.5	21	90	6	81	30	35	9	24	1.87
35908001--35908067	13	5.1	13	81	3	89	29	7	25	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35915239--35915438	41	4.9	41	82	6	217	30	21	27	21	1.98
35915626--35915687	31	2.0	31	96	0	115	27	9	27	35	1.88
35922943--35923142	41	4.9	41	83	3	224	28	21	29	20	1.98
35923330--35923391	31	2.0	31	93	0	106	27	8	27	37	1.85
35923336--35923412	31	2.4	31	84	4	91	28	10	27	33	1.90
35940446--35940507	31	2.0	31	96	0	115	19	22	24	33	1.97
35948766--35948914	25	6.0	25	74	12	126	22	14	26	36	1.92
35948786--35948904	50	2.4	50	88	0	184	22	15	25	36	1.93
35953666--35953701	18	2.1	18	89	5	56	44	22	0	33	1.53
35954425--35954767	85	4.0	85	99	0	679	29	15	14	41	1.86
35955699--35955744	22	2.1	22	100	0	92	36	13	4	45	1.63
35956402--35956440	19	2.1	19	95	0	69	20	7	15	56	1.63
35963305--35963356	22	2.4	22	83	0	68	15	15	17	51	1.76
35965091--35965138	25	1.9	25	82	0	60	35	18	22	22	1.96
35965180--35965228	24	2.0	25	84	4	64	30	22	26	20	1.98
35968788--35968813	3	8.7	3	100	0	52	30	0	0	69	0.89
35969963--35970008	18	2.6	18	86	6	67	39	0	4	56	1.19
35970108--35970191	27	3.0	26	73	10	69	33	1	2	63	1.15
35972579--35972631	25	2.1	25	82	0	61	30	11	15	43	1.81
35982944--35982985	20	2.1	20	90	0	66	23	21	23	30	1.99
36003172--36003212	20	2.0	21	90	4	66	46	21	0	31	1.52
36005573--36005643	27	2.6	27	82	12	92	40	23	14	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36005905--36005976	33	2.2	33	82	5	83	26	26	22	25	2.00
36008788--36008833	15	3.1	15	79	17	51	80	0	2	17	0.81
36013879--36013924	23	2.0	23	87	8	67	23	6	2	67	1.25
36013874--36013932	23	2.8	20	75	22	50	28	6	1	62	1.30
36028166--36028228	28	2.3	28	81	15	78	61	3	1	33	1.21
36031262--36031302	21	2.0	21	90	0	64	70	4	0	24	1.06
36040940--36040992	21	2.5	21	81	9	63	30	30	1	37	1.68
36040957--36041011	21	2.7	21	78	15	62	36	32	0	30	1.58
36049143--36049178	15	2.4	15	90	0	54	38	13	0	47	1.44
36049186--36049221	3	12.0	3	100	0	72	33	0	0	66	0.92
36049648--36049694	18	2.7	18	86	3	60	48	4	6	40	1.48
36051699--36051843	67	2.2	67	84	0	200	37	16	23	22	1.94
36057644--36057686	10	4.1	10	82	11	50	58	6	0	34	1.25
36070457--36070499	20	2.2	20	82	0	50	41	0	23	34	1.55
36073739--36073816	20	3.9	20	82	0	93	11	28	17	42	1.84
36081053--36081098	20	2.2	20	81	11	58	28	28	23	19	1.98
36092223--36092401	51	3.5	50	76	6	175	24	17	27	30	1.97
36096511--36096604	49	1.9	49	93	0	161	23	19	25	31	1.98
36097599--36097676	20	3.9	19	73	6	66	37	11	5	46	1.62
36098097--36098140	22	2.0	23	86	4	63	72	11	2	13	1.21
36104907--36105013	53	2.0	53	98	0	205	25	25	26	23	2.00
36105724--36105881	43	3.7	42	77	3	163	31	26	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36106299--36106424	63	2.0	63	96	0	234	28	21	26	23	1.99
36106756--36106813	30	1.9	30	89	0	89	41	3	24	31	1.71
36107026--36107056	13	2.4	13	94	0	53	32	0	12	54	1.38
36111773--36111831	29	2.1	28	93	3	100	27	10	28	32	1.89
36113979--36114010	13	2.5	13	94	0	55	31	0	12	56	1.37
36114105--36114346	50	4.7	50	84	4	288	26	24	28	19	1.99
36114105--36114354	100	2.4	103	87	6	355	26	24	28	20	1.99
36115357--36115457	43	2.4	42	93	1	175	36	28	13	20	1.91
36115357--36115482	43	3.0	41	87	6	157	34	26	15	24	1.94
36117523--36117599	40	1.9	40	82	10	95	50	10	5	33	1.59
36117675--36117862	86	2.2	85	83	6	252	42	15	9	32	1.79
36117953--36118127	86	2.0	87	82	1	208	46	16	6	30	1.72
36120825--36120876	19	2.7	19	78	21	56	51	0	7	40	1.30
36121129--36121189	10	5.8	10	78	7	59	42	4	0	52	1.23
36121158--36121190	12	2.9	12	86	13	52	42	6	0	51	1.26
36121123--36121195	30	2.4	29	80	14	85	45	4	1	49	1.29
36122097--36122137	21	2.0	21	85	0	55	43	34	0	21	1.53
36122146--36122198	21	2.4	23	79	17	60	30	49	1	18	1.59
36122798--36123072	41	6.7	42	79	7	246	29	26	22	21	1.99
36122818--36123072	123	2.1	123	84	2	325	29	26	22	21	1.99
36123392--36123440	18	2.8	18	87	3	64	46	4	6	42	1.47
36125499--36125563	18	3.4	18	78	18	69	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36125533--36125570	18	2.1	18	90	5	58	36	0	0	63	0.95
36127359--36127397	21	1.9	20	84	5	51	43	0	5	51	1.24
36129755--36130319	297	1.9	293	79	6	631	39	9	13	37	1.77
36131114--36131178	21	3.1	21	75	18	73	24	1	32	41	1.64
36132289--36132347	30	2.0	30	86	0	82	15	28	28	27	1.96
36135841--36135881	17	2.4	17	87	4	55	78	7	0	14	0.96
36135854--36135879	11	2.4	11	100	0	52	84	7	0	7	0.77
36139223--36139510	151	1.9	152	87	6	433	42	7	5	44	1.56
36139442--36139579	69	2.0	69	98	0	267	42	7	7	42	1.61
36140387--36140465	39	2.0	39	92	0	131	39	29	15	16	1.89
36140391--36140850	42	11.1	42	88	1	624	34	23	19	22	1.96
36141265--36141297	8	4.2	8	84	7	50	0	12	0	87	0.53
36141265--36141296	15	2.2	14	94	5	55	0	12	0	87	0.54
36143803--36143941	51	2.7	51	80	4	147	25	15	26	31	1.96
36170262--36170295	16	2.2	15	89	5	50	44	0	0	55	0.99
36170957--36171010	25	2.1	26	83	10	67	33	3	1	61	1.25
36176734--36176926	41	4.7	41	90	1	296	26	20	29	23	1.99
36181494--36181568	27	2.6	28	85	10	91	32	21	4	42	1.71
36181517--36181579	27	2.3	27	86	5	83	30	20	4	44	1.72
36183137--36183331	51	3.9	50	82	4	230	31	29	16	23	1.96
36183144--36183328	101	1.8	101	89	3	291	31	28	16	23	1.96
36188294--36188325	15	2.1	15	100	0	64	25	6	28	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36188398--36188467	34	2.1	34	91	0	113	55	21	10	12	1.66
36190125--36190175	23	2.2	23	89	0	75	41	15	9	33	1.80
36205371--36205397	9	3.0	9	100	0	54	33	11	33	22	1.89
36209758--36209795	19	2.0	20	85	10	53	57	0	5	36	1.21
36209963--36209996	15	2.3	15	89	0	50	61	2	14	20	1.46
36211616--36211661	24	1.9	24	100	0	92	50	26	2	21	1.60
36211615--36211672	24	2.4	24	88	5	91	51	27	1	18	1.56
36216610--36216666	29	2.0	28	83	10	71	31	3	7	57	1.42
36219515--36219561	23	2.0	23	100	0	94	51	8	17	23	1.72
36219511--36219555	11	4.0	11	82	5	63	48	13	17	20	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187