genome.fa.s15.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  172  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52480397--52480431	17	2.0	18	88	5	54	57	25	5	11	1.56
52483967--52484150	80	2.3	81	84	4	230	26	17	19	36	1.94
52483953--52484150	27	7.4	27	82	1	209	25	18	19	36	1.94
52491415--52491468	27	2.0	27	85	3	74	35	20	22	22	1.96
52491469--52491668	27	7.4	27	87	0	283	25	21	18	34	1.96
52491487--52491668	81	2.2	81	94	1	312	24	20	19	35	1.96
52537126--52537297	47	3.7	47	77	13	210	23	19	27	29	1.98
52537179--52537348	46	3.7	46	75	14	179	22	19	27	30	1.98
52537130--52537343	93	2.3	93	94	2	376	22	19	27	29	1.98
52539267--52539362	42	2.3	42	75	13	99	31	26	15	27	1.96
52539286--52539365	41	1.9	43	87	5	119	28	27	17	26	1.98
52539285--52539385	42	2.4	41	81	8	114	29	28	16	24	1.97
52541191--52541258	29	2.3	30	84	2	84	20	25	30	23	1.98
52547139--52547687	47	11.6	47	80	9	546	33	8	27	30	1.86
52547488--52547565	22	3.3	22	65	22	59	35	10	26	26	1.89
52547322--52547687	190	1.9	188	89	2	563	33	9	29	27	1.88
52550077--52550133	23	2.4	23	85	2	69	40	17	19	22	1.91
52550077--52550145	24	3.0	23	82	4	75	37	17	20	24	1.93
52560712--52560885	40	4.4	40	90	3	246	24	21	27	26	2.00
52560851--52561271	209	2.0	209	98	0	815	26	18	20	33	1.96
52568767--52568982	40	5.4	40	87	4	287	24	20	26	27	1.99
52573046--52573260	108	2.0	108	94	0	376	34	23	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52573507--52573726	112	2.0	112	96	0	404	30	29	15	25	1.96
52574088--52574191	52	2.0	52	92	0	172	25	24	19	30	1.98
52576671--52576752	41	2.0	41	92	0	137	26	25	14	32	1.95
52580407--52580486	23	3.4	23	69	16	74	31	21	8	38	1.84
52580389--52580508	47	2.6	47	100	0	240	31	21	8	38	1.83
52584156--52584609	231	2.0	231	98	0	872	31	8	25	34	1.85
52584910--52584995	40	2.2	40	91	0	136	23	24	24	27	2.00
52584619--52585379	382	2.0	382	97	0	1443	30	12	22	34	1.92
52585292--52585393	40	2.6	40	86	7	138	24	24	28	22	1.99
52591866--52592010	27	5.4	27	76	3	121	41	18	13	26	1.87
52591858--52591969	54	2.1	54	89	0	170	42	21	9	25	1.83
52591858--52592010	54	2.8	54	85	2	164	40	20	12	26	1.88
52591989--52592042	27	2.0	27	85	0	72	33	22	22	22	1.97
52592445--52592513	35	2.0	33	88	5	102	26	21	21	30	1.99
52594002--52594054	27	2.0	27	92	0	88	32	22	24	20	1.98
52594223--52594336	27	4.2	27	80	4	131	21	21	21	36	1.95
52594223--52594336	54	2.1	54	85	3	149	21	21	21	36	1.95
52596360--52596413	27	2.0	27	85	0	72	38	7	14	38	1.75
52600449--52600518	34	2.1	34	81	10	81	25	18	25	30	1.98
52605506--52605615	54	2.1	53	87	1	157	17	24	21	36	1.94
52605506--52605615	27	4.1	26	87	5	139	17	24	21	36	1.94
52611891--52611946	24	2.3	24	90	3	94	35	5	39	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52614476--52614623	43	3.4	43	77	3	129	33	22	14	29	1.94
52618773--52618900	25	5.1	25	96	0	238	39	18	19	21	1.92
52621487--52621541	28	2.0	28	89	7	85	25	25	16	32	1.96
52621514--52621597	43	2.0	43	88	4	125	33	22	14	29	1.93
52630998--52631283	43	6.7	43	85	3	387	28	25	17	28	1.98
52632752--52632918	43	3.9	41	76	8	154	32	26	14	26	1.94
52632752--52632908	86	1.8	85	83	6	210	31	26	15	26	1.95
52636482--52636619	42	3.4	42	83	6	169	24	18	25	31	1.97
52636600--52636658	28	2.1	28	87	0	82	30	13	28	27	1.94
52638283--52638372	43	2.1	41	87	4	126	31	33	23	12	1.91
52638344--52638446	38	2.7	38	89	0	143	31	27	19	22	1.98
52641951--52642037	33	2.6	33	88	0	120	24	28	21	25	1.99
52642412--52642603	27	7.2	27	81	5	194	27	18	19	34	1.95
52642412--52642520	51	2.1	52	82	5	130	26	19	19	34	1.95
52642412--52642603	81	2.4	80	86	4	255	27	18	19	34	1.95
52642586--52642664	27	2.9	27	79	5	88	31	15	18	34	1.92
52659665--52659871	53	3.8	54	77	1	209	20	22	17	39	1.93
52667008--52667199	55	3.6	54	77	3	181	20	22	19	36	1.95
52672666--52672850	41	4.6	41	83	4	216	27	27	21	24	1.99
52677438--52677609	40	4.3	40	88	2	222	25	27	21	25	1.99
52687408--52687440	12	2.7	12	95	4	57	3	48	6	42	1.43
52689133--52689179	24	2.0	24	100	0	94	34	21	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52694274--52694329	15	3.7	15	81	9	51	55	17	12	14	1.69
52699553--52699589	14	2.7	13	84	15	56	45	0	0	54	1.00
52700316--52700354	19	2.1	18	86	13	53	17	0	15	66	1.25
52701861--52701907	24	2.0	24	100	0	94	34	21	17	27	1.95
52707002--52707057	15	3.7	15	81	9	51	55	17	12	14	1.69
52712281--52712317	14	2.7	13	84	15	56	45	0	0	54	1.00
52713044--52713082	19	2.1	18	86	13	53	17	0	15	66	1.25
52721416--52721444	10	2.9	10	100	0	58	20	51	17	10	1.74
52722768--52722821	22	2.5	21	77	11	56	50	3	22	24	1.65
52726718--52726792	38	2.0	38	100	0	150	42	5	16	36	1.70
52727689--52727810	43	2.9	42	81	2	145	29	16	23	30	1.96
52727894--52727941	20	2.4	20	82	0	60	31	2	31	35	1.70
52729608--52729690	29	2.9	29	94	1	150	16	18	28	36	1.93
52739175--52739237	31	2.0	31	100	0	126	38	12	11	38	1.79
52739854--52739942	44	2.0	44	89	4	135	47	3	10	39	1.54
52754328--52754357	6	5.0	6	95	0	51	46	16	0	36	1.47
52755018--52755353	3	111.0	3	68	17	117	29	7	3	59	1.42
52755481--52755515	15	2.3	15	90	0	52	37	11	0	51	1.38
52755499--52755540	18	2.3	18	91	0	66	33	16	0	50	1.46
52755506--52755543	6	6.3	6	100	0	76	34	15	0	50	1.45
52762899--52762966	29	2.3	29	82	5	84	27	29	13	29	1.94
52763073--52763140	29	2.3	29	82	5	84	27	29	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52763242--52763320	29	2.7	30	82	13	110	29	30	15	25	1.96
52762788--52763289	174	2.9	174	98	0	959	31	24	14	29	1.94
52766924--52766957	17	2.0	17	94	0	59	29	32	11	26	1.92
52773351--52773453	40	2.6	40	77	0	107	22	30	15	32	1.95
52782730--52782880	50	2.9	50	87	5	185	26	20	31	21	1.98
52783182--52783220	20	2.0	20	89	0	60	53	2	25	17	1.56
52789825--52790017	50	3.7	50	80	6	190	26	22	27	23	2.00
52791550--52791795	40	6.1	40	85	3	316	19	29	18	32	1.95
52791550--52791795	80	3.1	79	88	2	350	19	29	18	32	1.95
52791687--52791750	20	3.2	20	65	0	56	15	34	17	32	1.91
52793850--52793923	20	3.7	20	87	0	94	9	31	22	36	1.86
52798595--52798774	50	3.5	50	80	4	171	26	22	28	22	1.99
52803114--52803154	18	2.3	18	100	0	82	24	4	31	39	1.76
52805101--52806115	96	10.6	96	97	0	1781	26	27	9	35	1.88
52807563--52807735	56	3.1	56	99	0	337	23	23	8	45	1.80
52817028--52817105	23	3.4	23	85	7	104	48	11	5	34	1.61
52820784--52821083	154	2.0	150	87	3	431	22	19	18	39	1.92
52828020--52828046	13	2.1	13	100	0	54	44	0	14	40	1.46
52828061--52828180	10	12.7	9	66	19	57	31	3	3	61	1.28
52828059--52828110	18	2.9	18	81	16	63	28	1	1	67	1.12
52828061--52828141	9	8.6	10	67	16	57	29	2	2	65	1.18
52828331--52828502	95	1.8	92	82	6	220	34	6	13	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52833144--52833180	19	1.9	19	89	10	58	2	8	18	70	1.25
52834888--52834921	18	1.9	17	88	5	50	20	5	11	61	1.50
52846060--52846354	51	5.8	50	79	6	317	30	26	14	28	1.95
52846060--52846354	102	2.9	102	90	0	430	30	26	14	28	1.95
52846061--52846346	153	1.9	151	83	5	369	30	26	14	28	1.95
52847075--52847562	249	2.0	249	96	0	895	39	18	16	25	1.91
52851048--52851252	40	5.1	40	84	4	236	26	27	21	24	1.99
52856119--52856312	51	3.8	51	79	9	243	29	27	17	24	1.97
52856117--52856301	101	1.8	102	92	3	320	30	27	18	24	1.98
52856113--52856335	101	2.2	103	82	7	287	30	28	16	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187