genome.fa.s15.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  90  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26313326--26313368	22	2.0	22	90	0	68	48	23	13	13	1.79
26315039--26315536	249	2.0	249	97	0	951	42	10	16	30	1.82
26317240--26317358	57	2.1	58	82	4	143	29	20	5	45	1.72
26319881--26320037	49	3.2	49	75	13	137	35	14	27	23	1.93
26319826--26320014	98	1.9	98	81	8	224	35	13	24	26	1.92
26323295--26323339	20	2.2	20	84	0	54	22	17	0	60	1.37
26325392--26325565	87	2.0	87	97	0	330	48	8	19	23	1.75
26328124--26328215	23	3.8	26	80	12	99	41	21	21	15	1.90
26328135--26328215	23	3.4	23	87	5	108	40	22	22	14	1.90
26328252--26328342	26	3.5	26	82	7	105	36	18	21	23	1.95
26328399--26328527	64	2.0	64	90	0	204	35	24	20	19	1.95
26330021--26330155	71	1.9	71	100	0	270	30	7	11	50	1.66
26331219--26331294	21	3.7	21	75	10	93	40	0	10	48	1.38
26331221--26331298	41	1.9	41	97	0	147	39	0	10	50	1.37
26335847--26335892	23	1.9	25	86	8	69	41	6	0	52	1.27
26335833--26335990	79	2.0	79	98	0	307	34	12	8	44	1.73
26335926--26335971	23	1.9	25	86	8	69	41	6	0	52	1.27
26337273--26337306	15	2.3	15	94	0	59	55	11	0	32	1.36
26341947--26342260	159	2.0	158	99	0	610	20	38	20	20	1.94
26347093--26347159	31	2.2	31	83	5	82	56	1	4	37	1.29
26348971--26349085	45	2.6	45	91	5	189	27	24	15	32	1.95
26354212--26354287	22	3.5	22	68	13	57	46	3	17	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26356142--26356180	18	2.2	18	86	9	53	20	15	35	28	1.93
26357386--26357454	31	2.3	31	89	2	113	44	14	8	31	1.75
26359273--26359302	15	2.0	15	100	0	60	33	26	0	40	1.57
26362853--26362878	6	4.3	6	100	0	52	84	0	0	15	0.62
26376484--26376525	16	2.6	16	88	3	57	28	11	30	28	1.92
26378910--26378959	20	2.5	21	77	9	59	26	4	4	66	1.27
26381033--26381126	25	3.8	25	78	10	104	51	0	0	48	1.00
26381033--26381126	17	5.7	16	75	9	82	51	0	0	48	1.00
26381033--26381124	41	2.2	41	96	1	166	51	0	0	48	1.00
26381033--26381126	8	11.4	8	76	13	84	51	0	0	48	1.00
26381704--26381766	24	2.6	24	84	0	81	46	9	28	15	1.78
26391789--26391826	20	2.0	20	89	5	60	26	13	2	57	1.49
26393223--26393336	56	2.0	56	94	0	201	36	10	22	29	1.88
26395923--26395971	18	2.6	19	84	12	57	51	2	22	24	1.59
26395928--26395992	19	3.4	18	78	19	62	47	0	24	27	1.52
26396892--26396998	54	2.0	54	83	3	135	28	21	30	19	1.98
26398764--26398832	8	8.2	8	75	12	50	15	1	4	78	0.98
26410402--26410503	42	2.4	42	80	9	109	27	24	19	28	1.99
26410520--26410698	20	8.1	20	65	18	88	26	31	20	21	1.98
26410491--26410722	68	3.4	68	100	0	464	27	27	20	24	1.99
26411940--26411965	8	3.2	8	100	0	52	23	38	26	11	1.89
26416706--26416910	109	1.9	106	87	5	295	42	13	17	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26419285--26419314	2	15.0	2	100	0	60	0	50	0	50	1.00
26434222--26434265	17	2.5	17	82	10	54	40	2	18	38	1.63
26435106--26435490	128	3.0	128	100	0	770	50	22	3	24	1.63
26442245--26442554	135	2.2	138	78	10	305	45	12	9	32	1.74
26442693--26442751	31	1.9	31	92	0	100	52	6	15	25	1.67
26445642--26445683	18	2.3	18	80	8	50	59	0	2	38	1.10
26445773--26445839	34	1.9	35	87	3	100	44	14	8	31	1.76
26447865--26447902	17	2.2	18	85	4	51	63	0	2	34	1.09
26447851--26448150	24	12.8	24	67	13	142	55	5	6	34	1.46
26447941--26448133	70	2.8	68	76	8	174	54	5	6	33	1.47
26450533--26450581	22	2.2	22	92	0	80	26	6	28	38	1.80
26460538--26460583	20	2.3	20	88	3	67	52	2	2	43	1.25
26460664--26460714	22	2.3	22	86	0	84	37	0	3	58	1.16
26460894--26460962	19	3.6	19	74	5	59	24	1	7	66	1.25
26462733--26462822	26	3.6	26	73	13	89	16	26	17	38	1.91
26462839--26462889	24	2.1	24	85	7	68	19	25	17	37	1.94
26469885--26470330	223	2.0	222	91	0	730	39	6	19	34	1.78
26470822--26470878	26	2.2	26	81	6	62	15	22	26	35	1.94
26478995--26479033	20	2.0	20	89	0	60	51	2	5	41	1.38
26482561--26482800	43	5.7	41	78	9	182	27	27	20	25	1.99
26483226--26483266	21	2.0	21	85	0	55	7	48	12	31	1.68
26483177--26483482	87	3.5	87	99	0	594	13	31	16	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26483313--26483353	21	2.0	21	85	0	55	7	48	12	31	1.68
26483400--26483440	21	2.0	21	85	0	55	7	48	12	31	1.68
26488930--26488995	25	2.6	25	90	0	96	36	0	16	46	1.47
26488933--26489573	16	40.5	16	64	22	118	36	2	16	44	1.61
26488948--26489402	41	10.9	41	81	11	222	37	2	16	43	1.63
26489133--26489339	25	7.7	25	66	21	98	39	2	14	43	1.58
26489128--26489494	82	4.3	82	90	6	549	38	2	15	44	1.59
26489324--26489606	25	11.6	25	73	15	93	36	1	18	44	1.59
26489370--26489606	25	9.4	25	77	12	119	36	1	18	43	1.58
26489323--26489496	94	1.9	92	89	4	269	37	1	16	44	1.58
26489417--26489494	41	1.9	41	94	0	138	39	2	15	42	1.61
26489486--26489606	25	4.9	24	85	9	122	33	0	21	43	1.58
26489486--26489631	49	2.9	51	82	10	153	34	1	21	42	1.62
26490300--26490372	21	3.3	21	68	17	67	58	6	5	28	1.46
26490762--26490832	19	3.9	18	87	8	101	45	18	5	30	1.72
26492866--26492947	7	11.7	7	70	5	58	45	36	0	18	1.50
26492864--26492928	14	4.6	14	82	3	76	43	40	0	16	1.49
26492865--26492928	29	2.2	28	78	5	74	43	39	0	17	1.49
26493421--26494149	113	6.4	114	93	1	1031	24	21	19	33	1.97
26497044--26497532	166	2.9	166	92	0	807	28	17	16	37	1.92
26502991--26503049	24	2.6	23	83	5	66	52	0	1	45	1.10
26503672--26503734	33	1.9	32	87	3	90	57	1	0	41	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26503665--26503729	16	4.1	16	67	13	53	58	1	0	40	1.07
26504270--26504355	45	1.9	45	90	0	136	54	1	2	41	1.20
26505286--26505338	27	2.1	25	82	10	63	35	3	11	49	1.57
26508867--26509105	67	3.6	67	79	5	241	23	21	19	35	1.96
26511782--26511881	39	2.6	39	82	4	114	49	8	5	38	1.54
26537394--26537438	22	2.0	24	86	8	67	66	0	20	13	1.24
26540078--26540115	18	2.0	21	85	15	55	44	0	7	47	1.32
26540086--26540142	29	2.0	29	83	13	73	50	1	7	40	1.40
26542050--26542088	20	1.9	21	89	5	62	53	2	0	43	1.14
26542771--26542810	18	2.2	18	95	0	71	17	17	5	60	1.54
26549303--26549330	5	5.6	5	100	0	56	21	57	0	21	1.41
26552013--26552048	18	2.0	18	100	0	72	50	11	0	38	1.38
26560353--26560407	21	2.7	20	88	8	83	32	5	12	49	1.64
26569389--26569461	14	4.9	14	74	21	60	67	1	2	28	1.13
26569391--26569447	19	2.9	19	84	7	62	66	1	3	28	1.18
26570095--26570149	16	3.4	16	82	7	67	52	0	0	47	1.00
26570096--26570150	17	3.1	17	75	17	58	52	0	0	47	1.00
26570827--26570864	16	2.4	16	82	4	51	65	0	0	34	0.93
26574328--26574394	35	1.9	35	81	0	80	40	34	16	8	1.80
26577785--26577822	19	2.0	19	85	10	51	50	0	5	44	1.24
26578654--26578691	12	2.9	13	81	14	51	44	0	18	36	1.50
26595473--26595519	24	2.0	24	91	0	76	44	14	2	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26597461--26597505	23	2.0	23	95	0	81	28	8	22	40	1.84
26598465--26598781	168	1.9	168	84	1	420	42	12	10	33	1.78
26603231--26603331	1	101.0	1	68	0	58	84	0	0	15	0.63
26603229--26603347	6	19.7	6	97	1	220	81	0	0	18	0.69
26603557--26603602	23	2.2	20	84	11	56	67	13	2	17	1.33
26603802--26603847	19	2.4	19	85	0	56	39	17	10	32	1.84
26603817--26603855	19	2.1	19	95	0	69	38	17	7	35	1.79
26603820--26603866	19	2.6	19	83	6	62	40	14	8	36	1.77
26604400--26604917	45	11.7	45	72	11	232	24	25	21	28	1.99
26604541--26604652	44	2.5	44	85	2	154	28	20	21	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187