genome.fa.s15.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  105  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30765371--30765432	26	2.4	26	83	2	81	35	9	20	33	1.86
30780854--30780912	26	2.2	26	96	3	109	59	0	3	37	1.14
30791102--30791335	10	23.4	10	69	21	102	1	28	0	70	0.96
30791159--30791261	18	5.3	18	67	24	57	1	28	0	69	0.99
30791104--30791332	40	5.6	41	88	8	308	1	28	0	69	0.96
30791250--30791312	5	13.0	5	75	6	58	0	33	0	66	0.92
30791387--30791450	27	2.4	27	89	0	101	18	28	21	31	1.97
30795308--30795351	21	2.0	22	86	4	63	61	0	0	38	0.96
30803670--30803725	11	5.3	11	73	14	55	28	0	3	67	1.07
30805321--30805377	18	3.1	18	73	9	51	24	14	14	47	1.80
30811957--30812001	18	2.4	19	81	3	56	33	0	17	48	1.48
30821713--30821882	85	2.0	85	95	0	304	32	24	13	30	1.93
30829026--30829504	89	5.4	89	91	2	739	26	24	19	29	1.99
30831842--30832824	89	11.1	89	88	3	1397	25	24	18	30	1.98
30831843--30832772	44	20.9	47	68	12	349	25	24	19	30	1.98
30845081--30845140	3	19.3	3	81	6	50	60	0	6	33	1.23
30845077--30845141	18	3.9	18	72	27	63	58	0	9	32	1.30
30846223--30846253	16	1.9	16	93	0	53	35	6	12	45	1.68
30849400--30849447	24	2.0	24	84	8	62	18	2	14	64	1.38
30851798--30851828	7	4.4	7	91	0	53	29	0	0	70	0.87
30852860--30852885	12	2.2	12	100	0	52	7	15	0	76	0.99
30853888--30854016	63	2.0	63	92	2	215	35	13	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30854892--30854964	35	2.1	34	92	2	119	32	6	35	24	1.82
30855131--30855259	57	2.2	59	78	10	142	41	0	4	53	1.27
30857912--30857945	17	2.1	17	88	5	52	41	5	8	44	1.60
30865512--30865600	35	2.5	35	78	5	99	39	34	12	13	1.82
30868193--30868229	18	2.1	19	85	10	51	59	5	10	24	1.52
30873926--30874030	20	5.3	19	71	6	84	33	16	34	16	1.91
30873906--30874085	79	2.2	81	87	1	247	32	16	31	20	1.94
30873906--30874088	40	4.6	41	88	3	248	32	16	31	20	1.94
30876815--30876931	34	3.4	34	81	4	101	31	9	15	43	1.78
30879770--30879802	17	1.9	17	100	0	66	48	12	21	18	1.80
30881423--30881489	21	3.3	20	71	8	55	61	1	5	31	1.29
30885412--30885436	3	8.3	3	100	0	50	0	32	0	68	0.90
30886060--30886129	30	2.3	30	82	0	77	47	5	5	41	1.51
30886116--30886181	22	2.9	23	77	11	64	54	0	1	43	1.09
30887645--30887684	20	2.0	21	85	5	55	55	10	2	32	1.47
30889856--30889923	33	2.1	33	100	0	136	48	11	26	13	1.76
30896250--30896323	29	2.3	30	80	19	80	60	4	2	32	1.29
30896274--30896336	29	2.2	28	81	16	67	66	4	3	25	1.26
30897819--30897877	29	2.1	27	84	9	75	44	13	15	27	1.84
30899070--30899198	63	2.0	63	81	0	150	31	31	8	28	1.87
30903313--30903346	17	2.0	17	88	0	50	38	14	0	47	1.45
30906815--30906851	17	2.1	18	90	5	58	43	8	8	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30908834--30908943	20	5.6	20	74	14	86	35	13	9	41	1.76
30908855--30908943	39	2.2	40	90	5	137	37	14	5	42	1.69
30916889--30917033	68	2.1	71	79	10	156	51	3	4	40	1.40
30917411--30917453	19	2.3	19	87	0	59	39	2	4	53	1.34
30918925--30918991	25	2.9	22	79	12	80	38	16	23	20	1.92
30918941--30918999	25	2.4	25	91	0	100	38	16	22	22	1.93
30928764--30928879	12	9.5	11	70	25	74	81	3	11	4	0.96
30928764--30928879	9	13.6	8	69	20	67	81	3	11	4	0.96
30928765--30928814	7	6.7	7	84	11	64	86	2	12	0	0.67
30928832--30928880	6	8.0	6	80	19	57	81	0	14	4	0.83
30929645--30929773	61	2.1	61	84	8	165	51	13	17	17	1.77
30931112--30931397	131	2.2	132	87	2	416	27	20	26	25	1.99
30931329--30931441	44	2.6	43	84	2	127	28	18	23	30	1.98
30931741--30932140	44	9.1	44	66	7	150	31	18	24	26	1.98
30931722--30931972	131	1.9	131	79	4	283	31	18	23	26	1.98
30931898--30932141	44	5.6	44	70	13	171	29	18	25	27	1.98
30932073--30932155	44	2.0	44	83	7	109	34	19	21	24	1.96
30931243--30932146	175	5.2	175	88	1	1341	29	19	24	26	1.98
30940242--30940275	17	2.0	17	94	0	59	32	29	5	32	1.81
30949360--30949425	28	2.4	27	78	12	71	24	4	4	66	1.29
30955463--30955547	44	1.9	44	97	0	161	41	14	14	30	1.85
30956175--30956250	9	8.4	9	82	5	82	28	7	18	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30968257--30969211	64	14.9	64	99	0	1892	40	4	14	40	1.66
30969350--30969377	13	2.2	13	100	0	56	46	7	0	46	1.30
30969399--30969516	54	2.1	54	96	3	218	33	10	12	43	1.77
30973007--30973143	49	2.8	50	80	6	154	30	21	24	24	1.99
30973182--30973280	50	2.0	50	83	0	126	28	24	28	19	1.98
30973206--30973334	49	2.6	49	79	6	136	31	20	24	24	1.98
30973014--30973369	191	1.9	191	100	0	712	31	19	23	25	1.98
30975287--30975329	18	2.4	18	88	0	59	23	25	9	41	1.84
30978835--30979480	126	5.1	126	88	2	931	27	17	17	37	1.92
30979552--30979651	34	2.9	32	81	11	101	48	15	0	37	1.45
30979703--30979773	21	3.4	21	66	14	65	46	25	0	28	1.53
30979694--30979788	42	2.2	42	85	7	129	47	26	1	25	1.59
30980092--30980134	19	2.3	20	84	11	56	46	2	0	51	1.13
30980106--30980143	19	2.0	20	84	5	51	50	2	0	47	1.15
30983058--30983257	100	2.0	100	99	0	391	43	17	13	26	1.86
30983481--30983596	43	2.7	43	85	1	153	31	27	17	23	1.97
30989275--30989430	42	3.7	43	72	16	137	30	26	17	25	1.98
30990845--30990982	72	1.9	73	90	1	224	31	18	19	30	1.96
30991800--30991838	12	3.2	12	85	0	51	56	2	2	38	1.27
30994747--30994946	100	2.0	100	100	0	400	43	17	13	27	1.85
30995170--30995285	43	2.7	43	85	1	153	31	27	17	23	1.97
31000456--31000531	4	18.5	4	75	17	50	21	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31000447--31000531	16	5.2	16	73	17	52	21	5	0	72	1.05
31000456--31000539	25	3.3	25	75	18	84	21	7	0	71	1.09
31001561--31001603	13	3.4	13	80	3	52	76	0	0	23	0.78
31001561--31001603	18	2.5	17	88	7	61	76	0	0	23	0.78
31003811--31003948	27	5.1	27	85	0	150	37	18	18	25	1.93
31003811--31003952	54	2.6	54	80	4	169	36	19	19	24	1.95
31003821--31003967	27	5.5	26	80	7	136	36	17	21	24	1.95
31004218--31004387	32	5.4	32	79	4	166	20	22	20	37	1.95
31004379--31004427	22	2.2	22	77	0	53	20	16	16	46	1.83
31013299--31013344	24	1.9	24	86	0	65	43	17	13	26	1.85
31013306--31013346	18	2.3	18	86	0	55	43	17	17	21	1.87
31015772--31015878	26	4.1	26	83	4	135	20	18	24	36	1.95
31015968--31016029	28	2.2	28	86	8	83	20	22	25	30	1.98
31019600--31019640	17	2.4	17	88	8	57	73	0	7	19	1.07
31028069--31028208	41	3.4	41	86	3	192	32	15	22	29	1.94
31034837--31034968	50	2.6	51	86	1	176	25	22	31	21	1.98
31038462--31038684	109	2.0	109	95	0	401	20	29	16	34	1.94
31043161--31043339	96	1.8	98	81	7	222	20	18	16	44	1.87
31052769--31052816	22	2.2	22	81	7	53	47	8	20	22	1.77
31052782--31052819	11	3.3	12	78	14	53	44	5	26	23	1.74
31053541--31053570	14	2.1	14	93	6	51	76	0	23	0	0.78
31053541--31053570	5	6.2	5	92	7	53	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31054911--31054947	19	1.9	19	88	0	56	18	16	21	43	1.88
31063258--31063307	8	6.4	8	84	11	68	24	2	0	74	0.93
31063258--31063324	16	4.3	15	83	7	80	25	2	0	71	1.00
31063258--31063324	31	2.2	31	83	5	82	25	2	0	71	1.00
31064986--31065090	6	16.8	6	87	9	104	14	0	7	77	1.04
31070076--31070132	29	1.9	30	82	10	73	38	7	12	42	1.70
31072273--31072319	22	2.1	22	84	0	58	57	14	8	19	1.63
31076769--31076830	31	2.0	31	96	0	115	12	30	27	29	1.93
31076779--31076826	14	3.2	14	72	16	51	12	35	22	29	1.91
31086963--31087010	17	2.8	17	87	6	62	29	20	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187