genome.fa.s15.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  125  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37267484--37267593	57	1.9	57	83	3	141	25	15	9	50	1.73
37268477--37268549	36	2.0	36	97	0	137	35	13	15	35	1.87
37274854--37275040	50	3.8	48	70	9	126	29	22	25	21	1.99
37287413--37287484	27	2.7	27	82	2	92	30	18	18	33	1.94
37289703--37289824	31	3.6	32	75	14	93	55	1	0	41	1.15
37289761--37289806	22	2.1	22	87	0	65	52	2	0	45	1.13
37289703--37289794	11	8.6	11	66	23	54	55	1	1	42	1.14
37292539--37292579	21	2.0	21	85	9	57	36	2	4	56	1.34
37292922--37292963	9	4.7	9	90	0	66	30	11	21	35	1.90
37296038--37296093	30	1.9	28	86	13	78	76	5	10	7	1.14
37296792--37296836	3	15.0	3	90	0	72	35	0	2	62	1.08
37296907--37297002	39	2.5	39	80	6	108	20	23	28	27	1.99
37296866--37296999	39	3.4	38	72	12	103	22	20	27	29	1.99
37302068--37302123	30	1.9	28	86	13	78	76	7	8	7	1.15
37302687--37302821	39	3.5	38	71	11	96	22	19	26	31	1.97
37310740--37310796	30	1.9	30	85	0	78	17	36	28	17	1.93
37310697--37310797	43	2.4	42	86	5	141	19	33	28	17	1.95
37313280--37313313	17	2.0	17	94	0	59	47	11	14	26	1.79
37318417--37318447	13	2.4	13	94	0	53	64	0	3	32	1.09
37321546--37321621	22	3.4	23	81	17	81	26	26	1	46	1.61
37321547--37321621	11	6.7	12	72	18	72	26	26	1	45	1.62
37321583--37321680	51	1.9	51	83	4	126	25	23	3	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37322824--37322856	7	4.7	7	100	0	66	27	0	15	57	1.38
37323477--37323516	18	2.2	18	86	0	53	17	30	7	45	1.76
37324060--37324785	21	33.0	22	78	10	686	44	31	0	23	1.60
37324060--37324785	43	16.5	42	76	13	630	44	31	0	23	1.60
37324111--37324186	27	3.0	27	72	23	92	42	38	0	19	1.52
37324198--37324252	28	2.0	28	92	0	92	41	34	0	23	1.55
37324201--37324250	15	3.5	15	74	20	52	42	34	0	24	1.55
37324416--37324494	6	11.4	7	69	22	51	44	36	1	17	1.57
37324417--37324482	27	2.4	28	82	7	82	40	39	1	18	1.60
37324438--37324482	13	3.4	13	87	6	63	40	42	2	15	1.59
37324437--37324477	14	3.0	14	89	7	66	41	41	2	14	1.59
37326126--37326177	22	2.4	22	96	0	95	19	26	21	32	1.97
37327675--37328241	126	4.5	125	85	2	742	30	22	17	29	1.96
37327675--37328241	251	2.3	250	88	1	823	30	22	17	29	1.96
37330303--37330335	17	1.9	17	100	0	66	36	0	3	60	1.12
37331129--37331170	21	2.0	21	100	0	84	47	4	0	47	1.23
37335597--37335673	19	3.7	21	76	13	68	41	16	3	37	1.67
37335597--37335654	22	2.6	22	81	7	64	41	17	5	36	1.72
37335633--37335686	19	2.8	19	88	0	90	37	16	7	38	1.77
37335895--37335938	22	2.0	22	100	0	88	50	9	4	36	1.55
37344351--37344419	25	2.8	26	82	10	83	33	21	21	23	1.97
37344337--37344456	25	4.9	24	75	15	79	33	19	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37354035--37354079	20	2.3	19	85	7	63	75	2	0	22	0.91
37354869--37354970	51	2.0	51	96	0	186	43	12	11	32	1.79
37355832--37355895	9	6.8	9	75	16	58	31	1	0	67	1.00
37357640--37357681	7	6.3	7	94	2	61	61	7	2	28	1.35
37358152--37358198	3	15.7	3	100	0	94	68	0	0	31	0.90
37361242--37361287	24	1.9	24	90	0	74	10	45	6	36	1.65
37361310--37361339	14	2.1	14	93	0	51	10	43	10	36	1.72
37362860--37362905	23	1.9	25	86	8	69	54	13	2	30	1.50
37363920--37363958	19	2.1	19	85	9	53	28	5	17	48	1.68
37366257--37366287	15	2.1	15	93	0	53	48	3	6	41	1.45
37372638--37372691	16	3.5	16	70	10	58	42	5	27	24	1.76
37372629--37372693	30	2.2	30	94	0	112	36	4	29	29	1.77
37373157--37373593	50	8.7	50	85	2	545	31	16	24	27	1.96
37379374--37379428	24	2.2	26	81	12	71	45	0	1	52	1.11
37379566--37379660	45	2.1	45	88	1	138	32	27	5	34	1.79
37379641--37379692	16	3.2	16	94	0	86	34	36	0	28	1.58
37380399--37380519	9	13.8	9	68	21	53	54	1	2	41	1.23
37380398--37380449	17	3.0	16	76	15	50	55	0	0	44	0.99
37380402--37380538	19	7.5	19	68	14	58	55	1	3	39	1.26
37380398--37380570	71	2.4	71	86	5	226	50	1	3	43	1.29
37380547--37380616	20	3.4	20	73	25	65	41	1	1	55	1.17
37380636--37380826	90	2.1	90	81	5	228	47	4	4	43	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37380718--37380766	18	2.7	18	79	14	57	48	2	2	46	1.25
37420550--37420636	45	1.9	45	88	4	131	42	2	20	34	1.65
37420639--37420682	6	7.2	6	92	2	52	59	0	25	15	1.37
37420640--37420682	12	3.5	12	90	3	68	58	0	25	16	1.38
37420640--37420682	18	2.3	19	84	4	61	58	0	25	16	1.38
37437556--37437601	15	3.0	15	87	3	56	56	23	2	17	1.52
37453924--37454263	44	7.8	44	73	8	239	28	23	17	29	1.97
37454250--37454486	131	1.8	130	87	0	357	24	23	22	29	1.99
37456578--37456645	29	2.4	28	82	4	82	13	7	10	69	1.37
37456578--37456645	28	2.4	27	80	9	73	13	7	10	69	1.37
37460733--37460762	10	3.0	10	100	0	60	50	20	0	30	1.49
37460856--37460895	21	1.9	21	85	10	55	55	5	12	27	1.58
37460866--37460895	11	2.8	11	95	5	53	56	0	13	30	1.37
37464380--37464412	16	2.1	16	100	0	66	42	6	33	18	1.75
37464636--37464677	16	2.6	17	82	17	54	54	0	0	45	0.99
37464623--37464994	120	3.1	120	90	1	568	51	5	1	41	1.34
37464789--37464818	15	1.9	16	93	6	53	50	6	0	43	1.28
37464853--37464893	13	3.2	12	80	12	55	58	0	0	41	0.98
37464881--37464915	17	2.1	17	100	0	70	65	0	0	34	0.93
37466712--37466741	13	2.3	13	94	0	51	30	13	6	50	1.67
37466946--37467006	31	2.0	31	96	0	113	36	13	18	32	1.89
37474570--37474629	3	20.0	3	80	0	66	60	3	5	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37474560--37474620	21	2.9	20	81	13	70	57	1	4	36	1.30
37474562--37474624	9	6.7	9	81	13	56	58	1	4	34	1.29
37476263--37476545	92	3.1	95	71	11	298	31	19	15	33	1.93
37476171--37476557	181	2.1	181	88	0	560	31	19	16	33	1.94
37476341--37476695	137	2.6	137	87	1	525	30	19	17	32	1.95
37476026--37476875	318	2.7	315	86	2	1127	30	19	17	32	1.95
37476522--37476876	92	3.8	93	77	10	379	29	19	18	32	1.96
37476478--37476880	181	2.2	183	91	1	641	29	19	17	33	1.95
37481622--37481656	18	1.9	18	94	0	61	62	8	8	20	1.49
37489549--37489605	12	4.8	12	80	0	60	61	7	3	28	1.39
37491517--37491598	34	2.4	34	89	0	119	40	28	13	18	1.88
37498222--37498267	21	2.2	21	100	0	92	45	8	4	41	1.55
37498374--37498414	19	2.2	19	100	0	82	43	14	4	36	1.67
37517762--37517806	16	2.8	16	82	0	54	60	2	4	33	1.29
37518167--37518372	92	2.3	91	82	7	253	41	20	7	30	1.80
37518394--37518440	20	2.3	21	85	3	60	74	0	6	19	1.03
37518464--37518506	18	2.3	19	84	4	61	44	0	4	51	1.22
37518460--37518506	19	2.5	19	82	0	67	44	0	4	51	1.21
37518707--37518829	56	2.2	57	85	5	160	29	7	4	58	1.46
37518753--37518806	27	2.0	26	82	10	65	27	5	3	62	1.34
37518811--37518848	20	1.9	20	88	0	58	26	5	2	65	1.27
37518944--37519134	89	2.1	90	86	6	280	32	10	20	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37523169--37523224	27	2.1	27	100	0	112	37	3	30	28	1.74
37532384--37532495	40	2.8	40	88	0	152	22	26	20	30	1.98
37532207--37532744	289	1.9	288	99	0	1067	30	23	16	29	1.96
37533652--37533864	107	2.0	107	99	0	417	29	16	11	42	1.83
37535655--37535806	29	5.3	29	82	4	168	26	32	14	26	1.94
37535660--37535806	57	2.6	57	84	5	174	25	33	14	26	1.94
37542542--37542649	57	1.9	56	83	7	137	26	31	12	28	1.93
37542527--37542653	29	4.5	28	78	9	141	26	32	13	27	1.94
37542528--37542673	29	5.1	28	76	11	111	28	30	12	28	1.93
37550954--37551046	48	1.9	48	97	0	177	22	11	18	47	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187