genome.fa.s15.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  141  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42552128--42552238	38	2.9	38	94	2	188	19	2	38	38	1.66
42552166--42552235	21	3.5	21	71	15	76	20	2	37	40	1.67
42553297--42553341	17	2.6	17	92	0	81	22	0	44	33	1.53
42555859--42555958	9	11.4	9	76	9	66	49	19	0	32	1.49
42556054--42556125	17	4.2	17	72	13	58	44	13	1	40	1.53
42556062--42556125	25	2.5	26	87	2	94	43	14	1	40	1.54
42557863--42557932	21	3.4	21	90	2	106	31	17	47	4	1.67
42558274--42558454	43	4.2	43	91	2	249	29	19	25	25	1.98
42558676--42558792	41	2.8	43	80	6	141	28	26	18	26	1.98
42560468--42560545	29	2.7	28	84	11	104	25	15	30	28	1.96
42560498--42560826	175	1.9	174	95	0	595	30	14	24	30	1.95
42563649--42563919	136	2.0	136	98	0	524	38	9	23	29	1.86
42570789--42571050	39	6.7	40	87	7	337	25	22	27	24	2.00
42572475--42572528	28	1.9	28	81	7	65	46	5	1	46	1.37
42581144--42581969	28	29.5	28	99	0	1618	35	28	10	25	1.90
42590891--42591001	42	2.6	43	81	5	127	48	19	17	14	1.81
42595397--42595431	18	2.0	18	88	5	54	20	25	0	54	1.45
42599562--42599626	25	2.6	26	85	7	98	27	24	18	29	1.98
42608282--42608372	25	3.6	25	76	8	76	34	17	20	27	1.95
42608328--42608391	27	2.4	27	83	0	83	40	21	15	21	1.91
42610648--42610705	26	2.2	26	93	0	98	44	3	1	50	1.29
42612371--42614279	967	2.0	953	85	3	2564	27	19	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615416--42615683	27	9.9	27	81	1	295	44	21	15	19	1.87
42617101--42617143	22	2.0	22	90	0	68	41	30	9	18	1.82
42637918--42637977	28	2.1	28	90	6	95	50	8	3	38	1.49
42640355--42640406	26	2.0	26	100	0	104	46	15	11	26	1.80
42640561--42640601	21	2.0	21	90	9	66	24	9	12	53	1.68
42640928--42640965	20	1.9	20	94	0	67	44	0	0	55	0.99
42640981--42641040	20	3.2	19	81	9	70	36	1	5	56	1.31
42645122--42645170	15	3.2	16	72	18	50	67	2	2	28	1.13
42646863--42646897	16	2.2	16	90	10	54	82	5	0	11	0.82
42646874--42646910	10	3.5	11	85	10	51	81	8	0	10	0.89
42646868--42646910	21	2.0	21	86	8	61	79	9	0	11	0.95
42646978--42647316	68	5.0	68	89	3	418	23	19	18	38	1.93
42654049--42654105	25	2.3	25	100	0	114	14	28	33	24	1.94
42662573--42663118	275	2.0	275	94	1	961	24	17	24	33	1.96
42663701--42663731	7	4.4	7	100	0	62	38	0	16	45	1.47
42674331--42674440	50	2.2	51	88	6	179	43	6	23	26	1.77
42676888--42677329	51	8.7	50	78	4	372	29	16	25	29	1.96
42676888--42677333	102	4.4	102	86	3	580	29	16	25	29	1.96
42682067--42682526	124	3.7	124	94	0	762	29	15	22	33	1.94
42688334--42688382	20	2.4	20	79	3	53	24	20	4	51	1.65
42691196--42691252	29	1.9	30	82	10	73	0	26	7	66	1.17
42692584--42692613	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42696980--42697122	65	2.2	65	81	2	153	26	17	20	35	1.95
42697177--42697228	26	2.0	26	84	0	68	23	19	19	38	1.93
42712195--42712252	26	2.2	26	87	0	80	27	17	15	39	1.90
42712301--42712357	26	2.2	26	84	6	71	15	17	24	42	1.88
42717154--42717303	44	3.4	44	71	9	126	36	9	18	36	1.83
42719858--42719955	37	2.6	36	74	20	92	28	19	20	31	1.97
42722573--42722640	34	2.0	34	100	0	136	44	14	17	23	1.86
42723800--42723837	13	3.0	13	84	3	51	39	21	0	39	1.53
42726948--42727039	47	2.0	46	89	2	139	35	21	10	31	1.88
42727085--42727125	20	2.0	21	90	4	66	36	12	0	51	1.40
42728456--42728504	21	2.3	20	80	16	55	30	16	20	32	1.94
42735657--42735755	53	1.9	52	80	12	114	32	4	3	60	1.30
42735805--42735872	10	6.6	10	74	15	50	33	4	2	58	1.33
42735826--42735864	10	3.8	10	86	6	51	30	2	2	64	1.21
42740507--42740580	37	2.0	37	100	0	148	21	21	8	48	1.76
42743030--42743068	19	2.1	19	90	0	60	38	0	17	43	1.50
42743109--42743147	18	2.2	18	90	0	60	41	2	7	48	1.45
42744720--42744765	16	2.9	16	81	12	58	19	4	4	71	1.20
42750092--42750139	24	2.0	24	100	0	96	37	0	12	50	1.41
42750101--42750152	24	2.2	24	82	0	59	42	3	9	44	1.55
42756583--42756642	19	3.1	19	82	2	66	31	3	3	61	1.28
42759460--42759509	24	2.0	25	85	11	68	60	0	10	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42759535--42759577	22	2.0	22	86	4	61	72	0	11	16	1.13
42759986--42760031	6	7.5	6	90	4	74	17	2	0	80	0.81
42759979--42760031	18	2.9	19	86	8	83	16	3	0	79	0.88
42761180--42761212	16	2.1	16	94	0	57	12	0	9	78	0.95
42761153--42761210	24	2.5	23	88	5	82	13	3	8	74	1.19
42766668--42766761	47	2.0	48	85	6	129	32	28	15	22	1.95
42769784--42769808	9	2.8	9	100	0	50	56	0	12	32	1.36
42788033--42788076	20	2.2	20	85	14	65	52	31	4	11	1.57
42790758--42790804	24	2.0	24	86	0	67	38	23	2	36	1.67
42791160--42791213	26	2.1	26	100	0	108	46	11	14	27	1.79
42792487--42792524	19	2.0	19	100	0	76	52	10	0	36	1.36
42796238--42797452	49	25.1	49	97	1	2242	32	8	29	29	1.87
42797571--42797649	37	2.1	37	90	0	122	24	18	31	25	1.98
42799811--42799843	16	2.1	16	100	0	66	36	6	36	21	1.78
42800057--42800098	15	2.7	16	82	14	52	52	2	0	45	1.13
42800066--42800107	15	2.9	15	82	10	52	52	0	0	47	1.00
42800179--42800231	16	3.4	17	73	21	53	56	0	0	43	0.99
42800105--42800291	60	3.1	59	66	13	157	49	6	2	41	1.42
42800057--42800351	119	2.5	120	93	2	486	50	4	2	42	1.35
42802588--42802721	46	3.3	38	81	16	171	54	11	29	4	1.55
42806335--42806363	13	2.2	13	100	0	58	34	13	0	51	1.42
42814724--42814790	25	2.7	25	83	0	80	32	16	25	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42814901--42814971	26	2.8	26	82	2	90	36	22	23	16	1.94
42819857--42819881	12	2.1	12	100	0	50	56	0	36	8	1.29
42834093--42834170	31	2.5	31	85	2	95	33	3	10	52	1.53
42843562--42843588	11	2.5	11	100	0	54	22	7	18	51	1.70
42844988--42845181	92	2.1	92	88	5	286	44	4	4	46	1.41
42845159--42845257	52	2.0	52	80	11	118	45	6	2	46	1.39
42845214--42845247	17	2.0	17	94	0	59	44	5	0	50	1.26
42845219--42845266	17	3.0	16	79	17	55	45	6	2	45	1.40
42845259--42845446	61	3.1	61	66	17	165	42	2	6	48	1.41
42845311--42845362	15	3.6	15	80	12	56	44	0	1	53	1.11
42845256--42845478	120	1.9	120	96	0	410	42	2	6	48	1.40
42845427--42845461	18	2.0	17	88	5	52	45	0	0	54	0.99
42845418--42845686	144	1.8	147	94	4	481	46	2	3	46	1.34
42845571--42845605	18	2.0	17	88	5	52	45	0	0	54	0.99
42845767--42845861	45	2.1	45	88	1	138	32	27	5	34	1.79
42845840--42845872	16	2.1	16	94	0	57	30	36	0	33	1.58
42845853--42845895	21	2.0	21	95	0	77	34	37	0	27	1.57
42849238--42849365	25	5.0	25	88	2	166	42	9	16	31	1.80
42849280--42849384	25	4.2	24	90	4	104	40	4	19	35	1.72
42859323--42859431	54	2.0	54	92	3	184	26	11	14	47	1.77
42862625--42862691	27	2.3	29	92	7	111	41	14	8	34	1.78
42869978--42870036	29	2.0	29	96	0	109	32	13	18	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42880299--42880368	27	2.4	29	76	9	72	31	14	8	45	1.75
42897534--42897587	28	1.9	28	82	14	67	59	0	0	40	0.98
42897521--42897587	21	3.1	21	80	4	71	55	0	1	43	1.09
42927186--42927320	33	3.8	34	71	21	105	21	20	25	32	1.98
42927107--42927318	76	2.8	74	85	3	262	23	20	24	32	1.98
42930435--42930759	162	2.0	162	97	0	614	25	16	22	36	1.94
42935257--42935308	27	1.9	27	92	0	86	21	25	28	25	1.99
42935321--42935425	43	2.5	43	90	1	158	22	17	27	32	1.96
42942373--42942578	33	5.6	33	70	20	142	22	19	26	31	1.98
42942367--42942576	76	2.8	76	89	1	323	22	19	26	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187