genome.fa.s15.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  133  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39557845--39557909	31	2.1	31	91	5	105	16	3	0	80	0.85
39557850--39557929	31	2.6	31	86	5	101	20	3	0	76	0.94
39560835--39560867	13	2.6	13	90	4	50	39	0	12	48	1.40
39562226--39562253	13	2.2	13	100	0	56	42	14	7	35	1.73
39574908--39575821	40	22.9	40	99	0	1765	25	29	22	22	1.99
39577318--39577454	46	3.0	46	79	0	148	24	29	10	35	1.90
39577448--39577550	47	2.2	47	85	3	136	29	29	8	33	1.87
39577489--39578276	66	11.9	66	95	2	1415	25	31	12	30	1.92
39578105--39578142	19	2.0	19	94	0	67	26	39	10	23	1.87
39578124--39578345	47	4.3	47	73	21	212	25	31	12	31	1.92
39578190--39578229	19	2.1	19	100	0	80	27	30	10	32	1.89
39583453--39583481	13	2.2	13	100	0	58	55	13	0	31	1.39
39594211--39594683	49	9.8	48	92	3	729	30	9	30	28	1.89
39594817--39594895	37	2.1	37	90	0	122	24	18	31	25	1.98
39596748--39596849	43	2.4	43	96	0	186	24	13	35	26	1.93
39596832--39596905	29	2.6	29	89	4	105	25	16	32	25	1.96
39597715--39597771	29	1.9	30	85	3	80	19	3	21	56	1.57
39599083--39599148	26	2.5	26	80	7	71	22	10	0	66	1.22
39620182--39620400	46	4.7	46	79	9	239	29	28	20	21	1.98
39620236--39620407	93	1.8	93	93	0	299	29	28	20	22	1.98
39627298--39627474	47	3.8	47	86	0	237	30	29	16	23	1.96
39627299--39627474	94	1.9	94	89	0	271	30	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39628861--39628932	24	3.0	24	78	6	67	19	23	19	37	1.94
39633808--39633938	47	2.8	47	88	1	181	23	15	28	32	1.95
39633809--39633957	47	3.1	47	74	10	135	24	15	26	32	1.95
39636403--39636533	39	3.4	39	89	1	201	26	23	27	22	1.99
39636403--39636552	39	3.8	39	82	6	144	26	26	26	21	1.99
39646245--39646328	40	2.1	40	91	4	134	22	29	25	22	1.99
39648386--39648445	29	2.1	29	100	0	120	30	28	11	30	1.92
39658478--39658646	48	3.5	48	78	7	153	26	15	28	28	1.96
39658574--39658717	42	3.3	42	81	5	135	26	15	28	29	1.96
39658623--39658736	42	2.7	42	84	0	138	25	14	30	28	1.95
39658654--39658821	90	1.9	90	83	2	221	28	19	27	23	1.98
39663029--39663188	38	4.2	38	84	4	169	20	20	26	33	1.97
39663000--39663188	76	2.4	78	83	6	206	21	21	25	31	1.98
39667715--39667779	28	2.3	28	83	0	85	40	9	23	27	1.85
39667852--39668073	39	5.7	39	87	2	286	18	20	29	31	1.97
39668105--39668194	39	2.3	40	90	1	137	14	18	30	36	1.91
39667996--39668207	105	2.0	105	100	0	424	15	16	32	35	1.90
39674331--39674396	28	2.4	28	81	0	87	43	7	19	28	1.78
39674471--39674719	39	6.4	39	88	3	324	19	20	27	31	1.97
39674473--39674834	117	3.2	117	82	10	364	19	19	27	33	1.96
39674654--39674868	107	2.0	107	100	0	430	15	16	27	39	1.90
39692039--39692389	47	7.4	47	95	1	594	32	7	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39693262--39693378	60	1.9	61	92	1	200	25	26	17	29	1.98
39695589--39695724	68	2.0	67	88	1	200	31	20	25	22	1.98
39697362--39697573	40	5.3	40	77	2	230	25	20	26	27	1.99
39697366--39697573	80	2.6	80	87	2	294	24	20	27	27	1.99
39700683--39700865	79	2.3	81	84	7	232	24	21	27	26	1.99
39700684--39700867	40	4.6	40	82	9	216	23	21	28	26	1.99
39700684--39700890	79	2.6	79	79	12	228	25	21	27	26	1.99
39707087--39707128	21	2.0	21	85	0	57	38	9	7	45	1.64
39708825--39708980	40	3.9	40	85	6	217	25	28	21	24	1.99
39708825--39708974	80	1.9	80	90	2	239	24	30	22	23	1.99
39719795--39720059	40	6.7	40	85	5	286	26	27	21	24	1.99
39719762--39720059	80	3.7	80	79	9	263	25	27	21	25	1.99
39719991--39720068	40	1.9	41	82	10	97	26	28	20	24	1.99
39723302--39723340	20	2.0	20	100	0	78	51	25	10	12	1.71
39749275--39749459	44	4.2	44	68	13	119	32	20	21	25	1.97
39749131--39749530	132	3.0	132	94	0	667	31	20	23	24	1.98
39749513--39749684	45	3.8	45	76	5	141	26	20	27	24	1.99
39749539--39749684	44	3.2	44	82	4	159	25	23	26	25	2.00
39749699--39749960	50	5.2	50	74	1	247	34	22	19	23	1.97
39749674--39749960	100	2.9	100	89	0	412	32	23	20	23	1.98
39752866--39752958	25	3.7	25	78	5	91	24	23	23	27	2.00
39752840--39752960	50	2.4	50	81	8	131	25	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39752915--39752965	25	2.0	24	85	7	66	25	23	25	25	2.00
39754127--39754159	17	1.9	17	93	0	57	45	6	0	48	1.27
39761824--39761855	16	2.0	16	93	0	55	25	15	0	59	1.36
39761979--39762077	46	2.2	43	81	12	110	33	25	18	23	1.97
39762073--39762273	51	4.0	51	78	8	221	29	28	17	24	1.97
39762269--39762296	6	4.7	6	100	0	56	17	35	0	46	1.49
39765365--39765441	25	3.1	25	77	7	93	25	23	23	27	2.00
39765524--39765596	25	2.9	25	77	0	83	26	20	21	31	1.98
39765291--39765600	155	2.0	155	96	0	566	27	23	18	31	1.97
39765527--39765604	25	3.1	24	77	3	75	25	20	23	30	1.98
39765986--39766020	17	2.1	17	89	5	54	34	20	5	40	1.76
39767355--39767407	26	2.1	24	83	16	63	16	7	3	71	1.24
39770021--39770052	6	5.3	6	100	0	64	68	0	31	0	0.90
39783224--39783254	9	3.4	9	90	0	53	25	12	22	38	1.90
39783308--39783353	9	5.1	9	89	0	74	47	13	8	30	1.72
39783389--39783431	21	2.0	21	82	8	52	25	32	0	41	1.56
39792195--39792256	20	3.2	19	81	6	79	53	4	27	14	1.61
39792186--39792256	19	3.6	19	78	12	81	52	4	30	12	1.58
39793063--39793124	24	2.7	22	75	9	70	32	3	8	56	1.44
39793028--39793198	23	7.5	22	71	10	103	33	6	5	54	1.49
39793257--39793315	24	2.4	23	77	22	59	35	1	3	59	1.24
39796960--39797014	22	2.5	22	80	14	67	70	10	5	12	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39798265--39798291	11	2.5	11	100	0	54	51	25	7	14	1.68
39799234--39799992	44	17.7	41	71	12	336	31	19	21	28	1.97
39799488--39799732	129	1.9	129	81	6	300	31	20	19	28	1.97
39799327--39799993	173	3.9	173	85	3	794	31	18	21	28	1.97
39800404--39800444	18	2.2	19	83	16	59	41	4	36	17	1.71
39800412--39800465	18	2.9	17	79	15	54	48	5	29	16	1.69
39800413--39800465	20	2.8	18	80	8	61	49	5	28	16	1.69
39801244--39801506	24	11.4	24	69	17	146	34	6	4	53	1.47
39801284--39801452	70	2.4	69	77	6	180	33	5	4	56	1.44
39801247--39801498	69	3.6	68	76	10	208	34	6	4	54	1.47
39801850--39802001	42	3.6	42	84	5	191	31	25	17	25	1.97
39801845--39802000	43	3.7	43	87	5	210	32	25	17	24	1.97
39801845--39802000	85	1.8	85	86	5	226	32	25	17	24	1.97
39801843--39802021	85	2.1	85	82	8	222	33	26	16	23	1.96
39806786--39806818	15	2.3	15	94	5	59	33	33	0	33	1.58
39807077--39807181	41	2.6	41	86	6	158	32	27	17	22	1.96
39809088--39809117	12	2.4	13	94	5	53	66	6	6	20	1.38
39815461--39815499	20	2.0	20	90	10	62	15	23	5	56	1.59
39815756--39815891	50	2.8	49	83	1	164	20	27	22	28	1.99
39815790--39815891	49	2.1	50	88	1	152	17	32	23	26	1.97
39823180--39823302	50	2.4	50	78	6	122	37	14	14	33	1.87
39824823--39824861	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39825064--39825305	50	4.7	50	76	3	171	25	25	20	28	1.99
39834622--39834863	50	4.8	50	76	5	227	29	28	16	26	1.97
39834621--39834860	101	2.4	101	83	4	295	29	27	16	26	1.97
39842301--39842407	37	2.9	37	66	5	99	36	23	16	23	1.94
39844242--39844271	16	1.9	15	93	6	51	36	13	23	26	1.92
39845628--39845771	42	3.4	42	84	3	191	29	18	18	32	1.95
39852015--39852224	40	5.3	39	89	4	242	25	21	27	25	1.99
39851962--39852224	120	2.2	120	82	4	309	25	21	27	25	1.99
39851963--39852259	80	3.7	80	81	6	230	26	21	27	24	1.99
39859965--39860174	40	5.3	39	89	4	242	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187