genome.fa.s15.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  36  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10478868--10478903	16	2.3	16	90	4	56	33	0	5	61	1.19
10479728--10479860	61	2.2	61	80	8	146	39	13	5	42	1.67
10480122--10480803	233	2.9	233	100	0	1364	42	7	14	36	1.73
10484308--10484345	18	2.1	18	100	0	76	28	23	21	26	1.99
10486353--10486568	87	2.4	87	84	7	265	39	20	7	32	1.80
10486941--10487068	9	14.0	9	71	16	77	32	3	0	62	1.19
10486942--10487048	10	11.3	10	72	15	57	30	4	0	63	1.21
10486933--10487063	38	3.6	37	78	13	112	33	3	0	61	1.19
10486897--10487068	55	3.1	55	83	9	181	32	5	1	60	1.28
10487134--10487352	89	2.4	88	84	9	291	32	9	20	37	1.84
10488984--10489018	16	2.2	16	89	0	52	65	17	14	2	1.38
10489170--10489214	23	2.0	23	95	0	81	44	13	4	37	1.64
10490917--10491067	45	3.4	45	76	9	146	28	14	21	35	1.93
10490907--10491106	45	4.5	45	75	6	122	27	13	25	35	1.92
10496326--10496558	47	4.8	48	86	3	292	27	21	31	19	1.98
10501037--10501185	76	2.0	76	86	2	210	40	14	23	20	1.90
10504009--10504096	44	2.0	42	87	8	124	30	12	3	53	1.55
10504787--10504853	32	1.9	33	82	14	82	65	10	8	14	1.46
10512447--10512481	17	2.1	17	88	0	52	45	2	5	45	1.41
10518940--10518964	7	3.6	7	100	0	50	28	16	40	16	1.89
10519104--10519139	3	11.3	3	88	11	54	63	0	2	33	1.08
10522248--10522333	42	2.0	42	95	0	154	33	23	25	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10526841--10526865	2	12.5	2	100	0	50	48	0	0	52	1.00
10555578--10555607	15	2.0	15	93	0	51	73	3	10	13	1.21
10556560--10557377	44	18.2	44	66	8	333	26	24	18	30	1.98
10556554--10557383	89	9.2	89	88	3	1101	26	24	18	30	1.98
10556554--10557389	181	4.6	180	86	3	1105	26	24	18	30	1.98
10565744--10565784	21	2.0	21	95	0	73	26	26	12	34	1.92
10569827--10569856	16	1.9	15	93	6	51	30	3	0	66	1.07
10571532--10572243	237	3.0	237	99	0	1397	39	14	13	31	1.85
10573428--10573457	15	2.0	15	93	0	51	73	0	10	16	1.09
10573893--10574586	154	4.6	150	85	7	888	51	7	9	30	1.63
10573893--10574575	307	2.3	305	88	5	1019	51	7	9	30	1.62
10577087--10577120	18	1.9	18	88	5	52	29	0	8	61	1.26
10579273--10579332	31	1.9	31	86	0	84	45	10	13	31	1.76
10580885--10580932	25	1.9	25	86	0	69	18	20	20	39	1.92
10582589--10582656	34	2.0	34	91	0	109	30	19	20	29	1.97
10583535--10583596	15	4.3	15	82	12	76	38	38	8	14	1.76
10587349--10587393	22	2.0	22	86	0	63	17	11	17	53	1.72
10588470--10588503	17	2.0	17	100	0	68	52	0	5	41	1.25
10591002--10591044	16	2.6	16	81	3	50	13	32	2	51	1.54
10596578--10596744	88	1.9	90	92	2	284	26	23	16	33	1.95
10607106--10607131	6	4.3	6	100	0	52	19	50	15	15	1.79
10620461--10620548	41	2.1	42	85	2	115	34	21	21	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10630761--10630839	33	2.4	32	83	4	95	44	17	11	26	1.83
10630825--10630901	14	5.0	15	71	20	52	42	14	9	33	1.77
10630841--10630880	20	2.0	20	90	0	62	50	12	10	27	1.72
10630829--10630895	34	1.9	35	90	3	109	46	13	8	31	1.74
10631237--10631311	38	2.0	37	85	10	100	30	8	29	32	1.86
10633098--10633156	23	2.4	25	83	11	86	38	1	0	59	1.08
10634145--10634205	20	3.1	20	71	17	56	40	8	11	39	1.71
10636160--10636242	43	1.9	43	97	0	157	33	10	12	43	1.77
10636500--10636547	22	2.3	22	86	13	66	56	8	0	35	1.30
10636624--10636671	2	24.0	2	100	0	96	50	0	50	0	1.00
10637008--10637046	12	3.6	12	74	25	50	46	0	0	53	1.00
10637017--10637105	8	10.0	8	68	20	52	48	1	1	49	1.16
10637008--10637073	20	3.3	20	89	4	98	48	1	0	50	1.10
10637015--10637149	9	14.6	9	67	18	64	51	1	1	45	1.19
10637510--10637572	19	3.3	19	80	10	67	55	6	0	38	1.25
10637510--10637567	20	2.8	20	80	12	66	56	6	0	36	1.26
10647104--10647161	18	3.4	18	88	6	77	29	8	24	37	1.85
10647125--10647167	18	2.7	15	77	19	50	27	11	27	32	1.92
10647585--10647862	147	1.9	147	97	0	529	32	22	17	27	1.96
10649236--10649268	15	2.2	15	89	10	50	21	9	0	69	1.15
10649798--10649834	18	2.1	18	89	0	56	24	10	5	59	1.52
10649852--10649895	6	8.2	6	85	14	53	34	0	18	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10649853--10649899	11	4.5	11	87	12	73	34	0	19	46	1.50
10649854--10649899	20	2.2	21	92	7	85	32	0	19	47	1.50
10649860--10649889	15	2.1	14	93	6	51	33	0	20	46	1.51
10651209--10651242	6	5.5	6	86	6	50	82	2	2	11	0.89
10651435--10651534	39	2.6	39	96	0	182	27	31	21	21	1.98
10660392--10660491	40	2.6	41	84	7	129	30	24	19	27	1.98
10660675--10660721	24	2.0	24	84	16	62	51	17	0	31	1.46
10662031--10662075	23	2.0	22	91	8	72	0	17	4	77	0.92
10662097--10662140	5	8.8	5	100	0	88	59	0	0	40	0.98
10663671--10663718	18	2.7	18	90	0	69	35	8	6	50	1.58
10663735--10663779	23	2.0	23	100	0	90	37	0	13	48	1.42
10663737--10663779	13	3.5	13	75	18	56	37	0	13	48	1.43
10665831--10665893	9	6.9	9	74	15	58	71	6	20	1	1.16
10666717--10666829	37	2.9	39	78	9	131	24	15	23	36	1.93
10669900--10669945	18	2.6	18	92	0	74	43	10	23	21	1.84
10677611--10677645	17	2.1	17	94	0	61	22	8	11	57	1.61
10677808--10677873	30	2.3	29	87	10	93	42	10	0	46	1.38
10678010--10678074	22	2.9	22	83	4	67	64	1	33	0	1.03
10678022--10678065	18	2.4	18	81	7	54	68	2	29	0	1.02
10678022--10678119	42	2.2	42	82	7	106	65	1	32	1	1.06
10678030--10678174	60	2.5	54	77	13	146	66	0	31	0	1.01
10678054--10678166	32	3.6	32	68	25	87	66	0	32	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10678581--10678610	14	2.1	14	93	0	51	63	6	10	20	1.47
10682574--10682618	18	2.5	18	88	0	72	15	48	6	28	1.70
10683342--10683387	23	2.0	23	82	0	56	43	10	4	41	1.59
10683559--10683598	11	3.7	11	83	6	55	0	27	0	72	0.85
10683561--10683599	21	1.9	20	89	5	60	0	28	0	71	0.86
10683681--10683781	27	3.7	27	78	5	89	17	28	25	27	1.98
10683828--10683899	30	2.6	27	85	12	101	44	1	8	45	1.42
10691283--10691329	11	4.3	11	83	8	60	55	0	2	42	1.12
10691281--10691314	10	3.2	10	88	12	50	55	0	0	44	0.99
10691281--10691322	21	2.0	22	90	4	68	57	0	0	42	0.99
10691563--10691618	11	5.3	11	81	10	55	44	3	0	51	1.18
10694654--10694749	19	4.7	21	82	10	74	40	15	6	37	1.73
10694654--10694711	22	2.6	22	84	7	73	43	17	3	36	1.66
10694690--10694762	19	3.8	19	94	0	128	36	15	9	38	1.80
10695856--10695899	16	2.6	16	85	7	52	34	0	0	65	0.93
10705555--10705592	19	2.0	20	89	5	60	31	15	42	10	1.81
10705902--10705954	23	2.3	24	87	6	74	47	13	16	22	1.82
10706318--10706523	54	3.8	54	85	2	261	38	14	18	28	1.90
10706514--10706574	26	2.3	26	85	0	77	32	16	19	31	1.94
10707476--10707863	192	2.0	192	98	0	749	29	25	13	31	1.94
10708539--10708582	16	2.6	17	78	7	54	25	13	43	18	1.86
10709540--10709584	13	3.5	13	76	11	56	33	15	8	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10712109--10712181	19	3.8	19	96	0	137	36	9	16	36	1.81
10713848--10713892	23	2.0	23	81	0	54	22	0	15	62	1.33
10718610--10718654	23	2.0	23	81	0	54	22	0	15	62	1.33
10721363--10721414	21	2.5	21	80	0	59	40	13	30	15	1.86
10726822--10726945	18	7.2	18	75	10	116	0	33	14	51	1.43
10726840--10726964	33	3.9	33	87	3	166	0	32	15	52	1.43
10726828--10726975	51	3.0	51	86	6	180	0	34	15	50	1.45
10726843--10726978	15	8.4	17	71	17	85	0	34	15	50	1.45
10737470--10737527	22	2.7	22	71	12	57	39	1	3	55	1.27
10737516--10737564	25	1.9	26	84	12	66	38	2	6	53	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187