genome.fa.s15.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  134  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39859912--39860174	120	2.2	120	82	4	309	25	21	27	25	1.99
39859913--39860209	80	3.7	80	81	6	230	26	21	27	24	1.99
39864049--39864166	48	2.4	49	90	5	186	41	9	0	48	1.41
39864130--39864204	38	2.0	38	97	0	141	45	6	0	48	1.29
39864168--39864334	94	1.8	88	87	6	217	38	10	5	45	1.62
39866353--39866382	16	1.9	16	93	6	53	30	0	20	50	1.49
39866998--39867063	30	2.2	30	94	0	114	18	24	33	24	1.97
39887536--39887565	13	2.2	14	94	5	53	36	6	0	56	1.26
39896809--39897274	232	2.0	232	100	0	932	42	22	15	19	1.89
39911809--39911956	72	2.0	73	84	3	192	29	29	16	25	1.97
39912143--39912174	16	2.0	16	100	0	64	50	25	12	12	1.75
39913954--39914000	20	2.3	20	85	0	67	21	12	36	29	1.91
39915671--39915776	48	2.2	48	85	9	137	14	24	1	59	1.45
39925751--39925939	40	4.8	40	82	3	193	38	16	28	17	1.91
39925763--39925939	80	2.2	79	83	1	219	37	17	28	16	1.92
39925799--39925939	20	7.1	20	66	13	67	36	18	28	17	1.93
39937023--39937783	381	2.0	381	99	0	1513	35	5	9	49	1.58
39937734--39937784	23	2.3	21	80	12	57	33	0	13	52	1.41
39939733--39939994	39	6.7	40	87	7	337	25	22	27	24	2.00
39955378--39955420	14	2.9	14	86	6	59	67	2	9	20	1.30
39955426--39955461	13	2.8	13	91	8	56	66	0	16	16	1.25
39956753--39956911	50	3.2	50	71	8	178	33	23	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39956744--39957057	101	3.1	101	85	4	447	32	23	21	22	1.98
39956744--39957109	199	1.8	199	85	0	516	33	24	19	22	1.97
39956744--39957100	101	3.6	100	81	3	405	32	24	19	22	1.97
39961722--39961855	50	2.7	50	92	0	223	26	22	30	20	1.98
39974206--39974398	50	3.7	50	78	6	172	27	21	29	21	1.99
39978710--39978752	21	2.0	21	100	0	86	34	18	13	32	1.90
39980541--39980591	21	2.4	22	77	9	61	43	7	1	47	1.43
39984684--39984708	4	6.2	4	100	0	50	24	0	76	0	0.80
39986793--39986835	18	2.5	17	85	7	52	25	30	0	44	1.55
39991342--39991380	11	3.5	11	83	16	53	71	12	0	15	1.14
39991343--39991389	23	2.1	22	88	11	69	72	10	2	14	1.21
39992965--39993004	21	2.0	21	85	5	55	22	22	12	42	1.87
39997484--39997668	40	4.7	40	81	5	178	27	28	20	24	1.99
39997451--39997668	40	5.5	39	77	7	165	25	27	20	25	1.99
40003485--40003653	27	6.2	27	84	4	196	30	26	15	27	1.96
40003497--40003652	82	1.9	81	88	3	233	29	28	15	26	1.96
40007624--40008606	502	2.0	503	96	0	1815	28	34	13	22	1.92
40010576--40010616	12	3.5	12	90	3	66	85	0	14	0	0.60
40010578--40010614	16	2.2	16	95	4	65	83	0	16	0	0.64
40010578--40010625	23	2.0	25	88	11	75	79	0	18	2	0.84
40010575--40010615	17	2.4	16	88	11	64	85	0	14	0	0.60
40012147--40012183	20	1.9	18	89	10	56	37	5	8	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40019329--40019566	51	4.7	49	81	4	260	31	28	16	24	1.96
40019329--40019561	101	2.3	102	85	3	310	31	28	15	24	1.96
40025177--40025220	23	1.9	23	100	0	88	36	13	18	31	1.90
40025237--40025292	26	2.2	25	87	3	76	19	21	23	35	1.96
40025424--40025483	28	2.2	26	91	5	93	23	20	25	31	1.98
40032408--40032460	13	4.2	12	81	9	52	24	1	0	73	0.93
40032833--40032873	14	3.0	14	75	17	50	14	21	0	63	1.30
40037566--40037658	24	3.9	24	85	0	132	29	27	19	23	1.98
40045706--40045895	50	3.7	50	81	4	164	23	28	20	28	1.98
40049962--40050154	50	3.8	50	81	0	224	22	29	22	25	1.99
40049962--40050152	100	1.9	101	84	1	258	22	29	23	25	1.99
40053919--40054049	50	2.6	50	79	2	138	20	29	23	26	1.99
40067138--40067190	25	2.1	25	100	0	106	47	22	3	26	1.68
40067138--40067179	13	3.3	13	73	6	50	42	23	4	28	1.74
40068722--40069080	186	1.9	183	83	5	454	37	12	13	35	1.83
40089805--40089861	26	2.2	26	87	9	80	31	0	0	68	0.90
40094286--40094510	113	2.0	111	89	3	344	28	14	18	38	1.90
40104290--40104376	25	3.5	25	81	10	99	24	24	21	29	1.99
40125392--40125442	25	2.0	24	85	7	66	41	5	11	41	1.66
40134883--40134925	21	2.0	21	91	8	70	16	27	4	51	1.64
40137224--40137358	68	2.0	68	88	2	200	22	24	17	35	1.95
40138164--40138222	29	2.0	29	86	0	82	42	1	25	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40138612--40138751	50	2.8	50	81	2	147	27	18	28	25	1.98
40147000--40147092	47	2.0	47	97	0	177	40	8	31	19	1.81
40165749--40165821	31	2.3	31	79	11	78	23	13	0	63	1.30
40169517--40169550	16	2.1	16	88	5	50	8	0	14	76	1.01
40178495--40178756	39	6.7	40	87	7	337	25	22	27	24	2.00
40191067--40191147	5	15.6	5	74	8	56	16	4	4	74	1.17
40209672--40209845	75	2.3	75	86	0	258	31	17	21	28	1.96
40210255--40210438	7	25.9	7	70	11	79	22	0	34	41	1.58
40222847--40223108	39	6.7	40	88	7	337	24	27	22	25	2.00
40246111--40246145	18	2.0	17	88	5	52	45	0	0	54	0.99
40246255--40246289	18	2.0	17	88	5	52	45	0	0	54	0.99
40246451--40246545	45	2.1	45	88	1	138	32	27	5	34	1.79
40246526--40246575	16	3.1	16	94	0	82	34	36	0	30	1.58
40248701--40248730	13	2.3	13	94	0	51	46	13	6	33	1.69
40249739--40249777	20	2.0	20	100	0	78	30	5	0	64	1.15
40254554--40254600	19	2.4	19	76	13	51	4	17	6	72	1.22
40277990--40278106	61	1.9	61	92	0	198	49	5	1	42	1.37
40279334--40279476	71	2.0	71	84	2	189	34	27	12	25	1.92
40303352--40303484	71	1.9	71	85	0	185	33	27	12	26	1.93
40314720--40314845	63	2.0	63	95	0	225	47	4	9	38	1.57
40316601--40316669	36	1.9	36	88	5	104	36	14	23	26	1.93
40317603--40317657	28	2.0	28	92	0	92	47	16	10	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40321170--40321211	20	2.3	19	88	12	61	26	0	4	69	1.08
40329607--40330145	269	2.0	269	100	0	1078	33	18	23	23	1.97
40332380--40332916	44	12.2	44	90	0	788	28	21	24	24	1.99
40337461--40337552	47	1.9	48	82	4	114	25	14	19	41	1.89
40341419--40341462	19	2.4	19	85	11	56	29	2	0	68	1.02
40349869--40349910	20	2.1	20	100	0	84	35	23	7	33	1.82
40350900--40350939	21	1.9	21	89	0	62	27	37	22	12	1.90
40353235--40353274	20	2.0	20	85	5	53	42	0	7	50	1.30
40354006--40354036	15	2.1	15	93	0	53	0	12	3	83	0.75
40354657--40354690	3	11.3	3	87	0	50	32	2	2	61	1.26
40354739--40354793	20	2.5	24	77	22	66	30	5	5	58	1.44
40359573--40359606	14	2.4	14	90	0	50	29	11	29	29	1.92
40359673--40359725	16	3.3	15	81	7	61	81	9	9	0	0.89
40359672--40359725	17	3.2	17	82	10	58	81	9	9	0	0.88
40361502--40361705	88	2.3	88	84	3	259	29	19	23	27	1.98
40361804--40362122	44	7.2	44	75	8	254	27	19	26	27	1.99
40361804--40362122	88	3.6	88	70	9	281	27	19	26	27	1.99
40361677--40362122	220	2.0	220	91	0	712	28	18	25	27	1.98
40361848--40362215	176	2.1	177	90	2	589	28	20	25	26	1.99
40363139--40363177	18	2.1	19	85	4	53	0	20	5	74	1.01
40370672--40370716	20	2.2	20	88	7	65	51	8	6	33	1.59
40372871--40372905	16	2.3	16	90	9	56	8	20	0	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40372854--40372905	13	3.6	15	77	15	56	11	21	0	67	1.22
40372903--40372958	18	3.1	17	87	5	76	7	17	3	71	1.23
40372860--40372958	6	16.0	6	68	8	56	8	19	2	70	1.22
40373823--40373866	18	2.4	18	84	3	52	15	13	4	65	1.41
40373819--40373868	19	2.6	18	78	9	55	14	14	4	68	1.36
40374154--40374291	70	2.0	69	92	1	231	42	2	21	34	1.68
40375149--40375193	20	2.2	20	84	7	56	51	6	6	35	1.55
40377554--40377583	15	2.0	15	93	0	51	26	23	13	36	1.92
40377559--40377595	15	2.5	15	90	0	56	24	21	16	37	1.93
40382407--40382467	30	2.0	30	96	0	113	34	0	21	44	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187