genome.fa.s15.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  62  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18375270--18375304	18	2.0	17	88	5	52	54	0	0	45	0.99
18375366--18375648	91	3.0	93	84	7	317	48	3	3	44	1.35
18375466--18375526	28	2.2	28	85	5	81	50	3	0	45	1.17
18375473--18375616	47	3.1	46	65	23	113	49	4	2	44	1.33
18375441--18375648	91	2.3	90	90	4	326	46	4	3	45	1.39
18375466--18375608	44	3.2	43	68	16	119	48	3	2	46	1.31
18375491--18375629	47	3.0	47	68	17	137	49	4	2	43	1.34
18380530--18380568	20	2.0	20	94	0	69	10	30	17	41	1.83
18380571--18380609	20	2.0	20	85	10	53	12	28	20	38	1.89
18383444--18383765	139	2.4	134	81	7	360	26	19	18	35	1.94
18384791--18384831	20	2.0	20	85	0	55	14	53	2	29	1.54
18386090--18386193	13	7.8	13	86	3	127	33	4	7	53	1.50
18386106--18386193	40	2.2	40	93	0	149	36	5	7	50	1.56
18387463--18387619	43	3.7	41	78	11	176	22	17	29	29	1.97
18387464--18387619	84	1.9	84	84	10	212	23	17	29	30	1.97
18390085--18390151	35	1.9	35	90	0	107	38	4	8	47	1.55
18394502--18394567	28	2.4	28	78	0	78	28	27	24	19	1.99
18394675--18394737	26	2.5	26	92	2	101	36	23	25	14	1.93
18394675--18394748	25	2.9	25	89	2	103	37	22	22	16	1.93
18394940--18395147	27	7.7	27	82	6	235	19	21	17	41	1.90
18394912--18395147	81	2.9	81	84	3	278	21	21	17	40	1.92
18396089--18396217	44	3.0	43	75	13	122	32	27	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18409473--18409942	238	2.0	238	95	1	845	23	22	24	28	1.99
18410684--18410792	45	2.4	45	92	0	191	32	18	11	38	1.86
18410746--18410821	34	2.3	34	93	2	127	34	17	7	40	1.78
18413251--18413309	26	2.2	28	85	8	79	57	8	3	30	1.45
18413260--18413309	12	3.9	12	79	20	57	58	10	2	30	1.42
18413748--18413814	32	2.1	32	94	0	116	35	26	1	35	1.66
18414221--18414263	19	2.2	20	83	4	52	9	11	4	74	1.20
18414220--18414263	20	2.2	20	84	8	54	9	11	4	75	1.19
18422711--18422755	22	2.0	22	100	0	90	13	22	17	46	1.83
18436015--18436053	15	2.5	15	91	4	60	51	0	5	43	1.24
18436819--18436867	25	2.0	25	87	0	71	42	0	12	44	1.41
18437264--18437348	43	2.0	43	88	4	127	50	1	24	23	1.56
18465625--18465824	68	2.9	68	79	5	226	19	15	31	33	1.93
18465788--18465962	69	2.5	69	84	1	208	24	13	29	32	1.93
18479288--18479477	50	3.7	50	78	4	173	24	27	20	27	1.99
18481741--18481781	21	1.9	22	85	5	57	43	14	14	26	1.84
18487883--18487970	33	2.7	33	83	0	113	19	36	4	39	1.72
18497663--18497730	21	3.3	21	76	13	70	29	13	20	36	1.91
18497677--18497730	21	2.6	21	85	8	76	31	12	22	33	1.92
18499605--18499745	39	3.6	39	89	0	201	31	4	20	43	1.71
18502703--18502750	21	2.2	21	85	3	60	56	2	4	37	1.30
18502718--18502756	16	2.5	15	84	8	51	56	2	2	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18504258--18504292	17	2.1	17	89	10	54	28	28	5	37	1.80
18509424--18509456	15	2.1	17	88	11	52	24	0	3	72	0.98
18509446--18509490	22	2.0	22	100	0	90	35	4	0	60	1.17
18512505--18512529	13	1.9	13	100	0	50	56	0	0	44	0.99
18514666--18514734	24	2.8	25	82	8	79	30	21	23	24	1.99
18523971--18524013	19	2.2	20	83	8	52	32	20	16	30	1.95
18526051--18526105	27	2.0	28	82	3	67	23	23	16	36	1.94
18526147--18526217	24	2.9	24	74	17	74	15	25	23	35	1.94
18526154--18526217	25	2.6	24	80	2	83	15	26	21	35	1.94
18526858--18526895	18	2.1	18	85	9	51	21	2	21	55	1.56
18527235--18527271	9	4.1	9	89	0	56	45	10	10	32	1.74
18536921--18537002	41	2.0	41	97	2	157	20	19	7	52	1.70
18538500--18538632	57	2.3	57	88	0	185	28	9	15	47	1.75
18543683--18543749	21	3.2	21	93	0	116	14	28	28	28	1.96
18546386--18546496	14	8.2	14	68	20	60	52	1	14	31	1.52
18546446--18546508	27	2.3	27	97	0	117	49	0	15	34	1.45
18546386--18546536	67	2.3	67	87	5	209	48	1	16	33	1.58
18546461--18546536	40	1.9	39	84	12	102	43	1	19	35	1.60
18553426--18553460	6	5.8	6	100	0	70	34	0	65	0	0.93
18554633--18554684	24	2.2	24	82	0	59	34	5	9	50	1.59
18556445--18556477	13	2.3	15	90	10	52	54	0	3	42	1.15
18556772--18556817	22	2.1	22	100	0	92	17	23	8	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18561428--18561464	18	2.0	19	85	15	51	32	18	5	43	1.73
18573547--18573730	27	6.8	27	83	0	206	33	20	22	23	1.97
18573547--18573730	81	2.3	81	85	1	244	33	20	22	23	1.97
18573714--18573766	26	2.0	27	85	3	72	24	16	20	37	1.93
18573726--18573791	26	2.7	24	83	9	71	25	12	21	40	1.88
18576704--18576757	23	2.4	22	84	9	72	31	20	14	33	1.93
18576827--18576905	23	3.4	23	75	3	70	26	25	13	34	1.94
18581003--18581187	101	1.8	101	90	3	300	24	17	27	30	1.97
18580999--18581196	51	3.9	51	78	5	240	25	17	27	29	1.98
18588378--18588492	8	13.8	8	77	10	115	23	4	0	72	1.03
18588442--18588496	4	13.8	4	77	21	53	21	5	0	72	1.04
18588716--18588773	6	9.8	6	83	3	64	12	3	5	79	1.02
18588708--18588773	18	3.9	17	82	9	73	12	3	4	80	0.98
18588707--18588796	23	4.0	21	77	18	76	14	2	5	77	1.04
18588708--18588796	29	3.1	27	78	16	83	13	2	5	78	1.02
18588757--18588801	23	2.0	23	86	8	65	15	2	8	73	1.18
18591670--18591728	16	3.7	16	83	0	82	20	44	10	25	1.83
18591671--18591743	32	2.3	32	81	9	96	17	45	10	26	1.82
18591765--18591835	33	2.2	33	89	0	106	32	14	28	25	1.94
18598416--18598453	17	2.2	17	86	9	51	26	2	2	68	1.16
18643000--18643027	12	2.3	12	100	0	56	75	0	7	17	1.03
18646555--18646595	20	2.0	20	85	0	55	51	2	7	39	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18652661--18652725	21	3.3	21	62	16	57	30	9	9	50	1.65
18652664--18652746	38	2.2	38	100	0	166	28	8	8	54	1.60
18657023--18657059	15	2.5	15	80	20	51	59	0	0	40	0.97
18657023--18657058	16	2.2	16	90	9	56	61	0	0	38	0.96
18666728--18667121	201	2.0	201	96	0	734	39	13	16	29	1.87
18670548--18670582	18	2.0	17	88	5	52	54	0	0	45	0.99
18670668--18670702	18	2.0	17	88	5	52	54	0	0	45	0.99
18670694--18670723	15	1.9	16	93	6	53	50	6	0	43	1.28
18670537--18670919	120	3.2	120	96	0	694	50	4	1	43	1.30
18670769--18670822	15	3.4	16	80	19	53	53	0	0	46	1.00
18670788--18670822	18	2.0	17	88	5	52	54	0	0	45	0.99
18670814--18670843	15	1.9	16	93	6	53	50	6	0	43	1.28
18670563--18670883	61	5.3	61	70	17	258	50	5	1	42	1.34
18672304--18672406	49	2.1	49	92	0	170	49	10	8	31	1.68
18673605--18674253	324	2.0	323	97	0	1226	25	25	24	23	2.00
18681127--18681230	41	2.5	41	93	0	172	24	29	19	26	1.98
18681209--18681321	40	2.8	40	76	11	115	29	24	21	24	1.99
18681762--18682004	114	2.1	114	93	3	411	40	14	3	41	1.62
18689375--18689399	13	1.9	13	100	0	50	68	24	0	8	1.16
18690422--18690495	31	2.4	31	95	0	139	13	33	37	14	1.86
18691767--18692058	44	6.8	43	73	15	183	26	23	19	29	1.98
18692022--18692301	141	2.0	141	92	1	472	25	23	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18692173--18692278	40	2.5	40	77	6	113	29	24	23	22	1.99
18692258--18692413	44	3.5	43	77	14	140	25	22	23	29	1.99
18692295--18692416	45	2.7	45	79	13	119	25	23	20	30	1.99
18691806--18692499	358	1.9	357	91	0	1138	26	22	21	28	1.99
18709720--18709790	27	2.5	28	77	20	69	45	2	5	46	1.41
18710472--18710521	26	1.9	26	88	8	75	60	6	4	30	1.39
18712430--18712491	31	2.0	31	96	0	115	33	9	16	40	1.81
18715250--18715281	16	2.0	16	100	0	64	25	18	12	43	1.85
18718778--18718808	15	2.1	14	94	5	53	70	0	9	19	1.14
18719233--18719269	19	1.9	19	94	0	65	29	8	54	8	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187