genome.fa.s15.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  23  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6650406--6650439	17	1.9	18	88	5	52	35	0	23	41	1.55
6651230--6651277	23	2.1	23	84	0	60	20	33	16	29	1.95
6651388--6651457	25	2.8	25	82	8	88	21	27	17	34	1.95
6659110--6659212	25	4.2	25	65	22	65	20	23	21	34	1.96
6659229--6659276	25	1.9	25	91	0	78	22	25	16	35	1.95
6660588--6660837	130	1.9	130	85	6	346	31	15	20	33	1.93
6661233--6661281	6	8.0	6	90	4	62	57	0	26	16	1.40
6661232--6661280	12	4.0	12	86	2	71	59	0	24	16	1.37
6662899--6662943	21	2.1	21	84	8	56	8	24	44	22	1.81
6666970--6667036	24	2.8	23	73	11	64	19	8	7	64	1.46
6667341--6667424	24	3.3	24	77	14	71	39	3	3	53	1.36
6667618--6667656	15	2.6	15	80	15	53	25	7	7	58	1.52
6679568--6679687	44	2.7	45	82	8	147	26	21	25	26	2.00
6679571--6679688	45	2.7	44	81	9	141	26	22	25	26	2.00
6681541--6681580	15	2.7	15	81	14	55	25	7	7	60	1.50
6682598--6682759	53	3.2	49	76	12	143	22	12	28	36	1.91
6686482--6686653	45	3.8	45	83	4	204	44	18	15	20	1.86
6686479--6686664	90	2.1	90	85	8	245	45	18	16	20	1.86
6686629--6686700	36	2.0	36	91	5	119	40	19	18	22	1.92
6686494--6686743	45	5.9	43	77	8	201	42	19	16	20	1.89
6686629--6686739	42	2.9	36	76	14	114	39	20	18	20	1.92
6693079--6693110	10	3.2	10	90	0	55	40	6	0	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6694130--6694268	66	2.1	65	90	6	219	47	2	2	48	1.26
6697561--6697601	16	2.6	16	84	0	64	43	4	2	48	1.37
6697592--6697636	23	1.9	24	95	4	83	48	0	0	51	1.00
6701225--6701269	21	2.2	20	84	4	54	37	2	11	48	1.51
6701629--6701723	47	2.0	49	85	4	131	29	8	26	35	1.86
6705109--6705178	27	2.6	27	90	0	113	34	30	15	20	1.93
6708840--6708895	21	2.7	20	77	5	58	16	21	17	44	1.86
6708860--6708966	42	2.5	42	81	3	117	17	21	16	43	1.87
6708938--6708992	20	2.7	20	80	5	56	20	20	14	45	1.85
6715861--6715996	42	3.2	42	79	7	116	19	19	16	44	1.87
6715909--6715980	21	3.4	21	64	0	54	19	20	15	44	1.86
6719931--6720066	42	3.2	42	79	7	116	19	19	16	44	1.87
6719979--6720050	21	3.4	21	64	0	54	19	20	15	44	1.86
6729305--6729441	42	3.5	41	72	24	132	23	16	25	35	1.95
6729267--6729518	75	3.4	75	90	1	380	22	17	24	35	1.95
6729419--6729620	102	2.0	102	86	1	280	21	19	25	33	1.97
6739110--6739179	24	2.8	25	75	10	72	20	22	22	34	1.97
6740727--6740760	4	8.5	4	100	0	68	23	0	0	76	0.79
6746706--6746738	9	3.7	9	95	0	57	36	9	6	48	1.60
6751639--6751675	18	2.1	18	94	0	65	35	10	5	48	1.61
6752653--6754285	816	2.0	816	97	0	3095	31	17	22	29	1.96
6753890--6755353	730	2.0	733	97	0	2772	28	16	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6756630--6756808	96	1.8	96	80	9	211	34	20	8	36	1.84
6757274--6757461	88	2.1	89	85	6	256	36	10	19	34	1.86
6763566--6763637	29	2.4	29	84	6	83	44	8	13	33	1.74
6767663--6767707	21	2.1	21	84	8	56	35	6	0	57	1.25
6768541--6768580	20	2.0	20	85	9	55	22	0	5	72	1.04
6773634--6773675	11	4.0	11	81	12	52	71	7	0	21	1.09
6776039--6776176	69	2.0	69	100	0	276	28	15	11	43	1.82
6777284--6777318	3	11.7	3	93	0	61	62	0	37	0	0.95
6792454--6792536	27	3.0	27	75	15	89	56	2	0	40	1.12
6792428--6792489	20	3.2	20	76	17	60	59	1	1	37	1.17
6792485--6792524	18	2.2	18	86	4	53	62	0	0	37	0.95
6792502--6792575	37	2.1	36	85	10	98	64	4	1	29	1.20
6795206--6795232	7	3.9	7	100	0	54	14	0	40	44	1.46
6795965--6796029	32	2.1	32	94	2	114	30	9	10	49	1.69
6802166--6802230	32	2.1	32	97	2	123	30	9	12	47	1.72
6803993--6804024	7	4.6	7	96	0	55	62	12	0	25	1.30
6803987--6804024	14	2.7	14	87	0	58	60	13	0	26	1.33
6813181--6813222	21	2.0	22	85	4	59	38	23	4	33	1.76
6818474--6818609	33	4.1	33	95	0	227	16	8	32	42	1.78
6820942--6821021	41	2.0	41	94	0	142	40	23	7	28	1.82
6829919--6829964	20	2.2	20	84	3	56	39	8	6	45	1.61
6830806--6830845	9	4.2	9	84	12	53	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6830792--6830824	15	2.1	17	88	11	52	60	0	0	39	0.97
6838145--6838170	7	3.7	7	100	0	52	53	0	0	46	1.00
6838321--6838382	31	2.0	31	90	6	99	53	17	4	24	1.63
6862371--6862501	43	3.0	43	85	4	174	31	28	16	24	1.96
6862858--6862988	66	2.0	65	83	8	167	16	26	14	41	1.87
6867717--6867816	9	11.6	9	71	12	59	34	1	17	48	1.54
6870949--6871000	23	2.2	24	89	3	79	50	7	28	13	1.69
6871207--6871332	41	3.1	40	83	3	153	24	19	18	38	1.93
6876159--6876191	11	2.8	12	81	9	50	15	15	15	54	1.71
6884553--6884668	29	3.9	30	72	9	94	28	14	16	40	1.88
6889495--6889534	19	2.1	19	95	0	71	17	22	17	42	1.89
6892858--6893117	51	5.3	51	87	8	342	31	15	24	28	1.95
6893011--6893115	43	2.4	44	91	1	176	30	13	26	29	1.94
6906096--6906139	17	2.6	17	78	10	54	52	4	6	36	1.49
6907412--6907465	27	1.9	29	81	7	67	42	0	0	57	0.98
6907832--6907889	29	2.0	28	83	12	73	63	6	0	29	1.20
6911511--6911550	2	20.0	2	89	0	62	0	52	2	45	1.14
6911654--6911690	6	6.3	6	96	3	67	35	51	13	0	1.41
6916415--6916467	26	2.0	26	85	7	72	35	28	5	30	1.80
6919136--6919549	202	2.0	202	92	0	693	34	20	13	31	1.92
6919725--6919756	15	2.1	15	94	0	55	62	9	12	15	1.54
6921349--6921389	19	2.2	19	91	4	66	70	0	2	26	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6921498--6921553	29	2.1	28	83	12	73	66	3	1	28	1.19
6922963--6922995	2	16.5	2	100	0	66	0	51	0	48	1.00
6923712--6923740	5	5.8	5	100	0	58	20	0	17	62	1.33
6924950--6924979	15	2.0	15	93	0	51	70	10	20	0	1.16
6926938--6926982	21	2.1	21	84	8	56	35	2	0	62	1.08
6936159--6936817	131	5.0	131	86	1	746	41	12	14	31	1.83
6936449--6936658	64	3.2	64	68	11	192	46	13	10	30	1.76
6936513--6936723	67	3.2	67	67	11	200	43	11	12	32	1.79
6936582--6937014	226	1.9	226	86	0	614	39	13	14	32	1.85
6936713--6936915	95	2.1	95	88	0	298	37	14	16	32	1.88
6936971--6937052	36	2.3	36	93	0	137	41	18	10	29	1.84
6943851--6943910	21	2.9	21	74	0	66	18	28	15	38	1.91
6943838--6943938	42	2.4	42	83	3	114	17	27	15	38	1.91
6946607--6946739	50	2.6	51	87	1	187	33	30	12	23	1.92
6946607--6946793	51	3.7	50	80	3	187	32	28	13	25	1.93
6946708--6946741	14	2.6	13	90	9	52	41	26	8	23	1.83
6953157--6953213	22	2.6	23	83	8	82	42	19	24	14	1.88
6954091--6954141	26	1.9	27	84	11	70	3	29	0	66	1.09
6954194--6954226	5	7.0	5	86	13	52	57	0	0	42	0.98
6957553--6957618	22	3.0	22	78	12	73	39	15	25	19	1.91
6958603--6958628	7	3.7	7	100	0	52	57	0	0	42	0.98
6960438--6960546	42	2.6	42	84	5	123	16	22	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6967010--6967055	22	2.1	22	95	0	83	60	4	15	19	1.51
6967151--6967289	69	2.0	69	100	0	278	24	15	22	37	1.93
6967425--6967540	56	2.1	57	88	3	173	24	20	10	44	1.82
6970045--6970106	30	2.0	33	84	9	85	19	41	20	17	1.90
6970280--6970318	9	4.3	9	93	0	69	10	17	35	35	1.84
6970337--6970396	24	2.6	24	82	7	72	31	11	33	23	1.91
6970383--6970432	24	2.1	24	92	0	82	38	14	34	14	1.85
6971148--6971289	69	2.1	69	94	0	248	38	16	5	39	1.72
6971644--6971687	21	2.0	21	83	12	54	50	2	18	29	1.59
6973720--6974270	181	3.0	181	98	0	1066	38	18	15	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187