genome.fa.s15.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  186  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57202833--57203057	80	2.8	79	80	7	231	25	28	21	24	1.99
57202989--57203066	40	1.9	41	82	10	97	26	28	20	24	1.99
57218577--57218640	27	2.4	27	87	7	87	17	18	18	45	1.86
57218577--57218650	26	2.8	25	80	11	85	17	17	20	44	1.87
57218577--57218660	27	3.2	26	80	8	80	17	16	20	45	1.86
57225060--57225151	28	3.3	28	87	0	130	29	19	23	27	1.98
57225486--57225647	27	6.0	27	81	2	182	16	16	21	46	1.84
57225491--57225647	81	1.9	81	84	5	210	15	15	21	47	1.83
57229766--57229803	19	2.0	19	89	0	58	5	26	21	47	1.71
57251453--57251714	39	6.7	40	87	7	337	25	22	27	24	2.00
57259637--57259675	21	1.9	21	89	5	62	38	5	10	46	1.60
57262355--57262379	12	2.1	12	100	0	50	44	48	8	0	1.32
57265553--57265593	13	3.4	13	74	19	52	36	0	14	48	1.44
57265544--57265595	23	2.3	23	93	3	88	38	0	13	48	1.43
57274867--57274896	16	1.9	16	93	6	53	53	6	33	6	1.53
57278518--57278791	137	2.0	137	96	0	503	39	6	14	40	1.72
57284606--57284692	45	2.0	44	95	0	147	29	33	17	18	1.94
57285107--57285213	23	5.0	21	77	7	99	36	24	20	18	1.95
57285146--57285216	23	3.0	24	85	6	101	36	21	19	22	1.95
57286622--57286679	30	2.0	30	86	6	84	67	3	24	5	1.27
57287756--57287801	23	2.0	23	91	0	74	17	19	19	43	1.88
57287755--57287830	21	3.5	21	80	7	80	17	22	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57291300--57291369	20	3.5	20	79	13	72	47	12	8	31	1.72
57294251--57294518	43	6.3	43	81	4	303	30	30	18	20	1.96
57294263--57294515	129	2.0	127	88	3	373	32	30	16	20	1.95
57294421--57294554	42	3.2	42	77	5	108	32	26	16	23	1.96
57295256--57295307	23	2.3	23	79	0	59	34	7	30	26	1.85
57297642--57297759	59	2.0	59	95	3	213	49	10	18	22	1.77
57299322--57299382	10	5.8	10	79	14	61	40	4	0	54	1.22
57300136--57300197	21	2.9	21	75	15	65	38	37	0	24	1.56
57300298--57300350	7	7.4	7	80	4	52	37	39	1	20	1.64
57300289--57300358	29	2.4	30	81	11	83	37	41	1	20	1.61
57301020--57301159	41	3.4	41	92	1	235	28	24	25	22	1.99
57306088--57306649	98	5.5	104	77	14	496	53	14	1	30	1.49
57306088--57306387	111	2.8	111	80	8	313	55	14	1	29	1.46
57306202--57306945	98	7.8	96	73	16	559	54	15	1	29	1.50
57307070--57307099	15	1.9	16	93	6	53	50	0	0	50	1.00
57309273--57309313	21	2.0	21	95	0	73	63	0	0	36	0.95
57309515--57309542	12	2.3	12	100	0	56	35	14	10	39	1.81
57309533--57309612	12	5.6	16	73	19	63	22	16	11	50	1.76
57309521--57309624	28	3.8	28	91	2	149	25	16	10	47	1.79
57309546--57309645	28	3.9	25	88	5	112	26	18	9	47	1.78
57309546--57309645	12	7.8	12	73	12	83	26	18	9	47	1.78
57311999--57312088	40	2.2	40	84	0	126	33	17	23	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57312136--57312245	40	2.7	40	87	1	157	30	21	21	26	1.99
57312618--57312659	14	2.9	15	79	10	52	21	0	35	42	1.53
57312630--57312680	21	2.4	22	83	9	61	19	0	45	35	1.51
57312647--57312688	22	2.0	21	81	13	50	21	2	42	33	1.66
57313253--57313752	84	6.0	83	77	4	423	30	16	16	36	1.91
57313308--57313720	168	2.5	168	81	4	476	29	15	17	37	1.91
57318881--57318938	22	2.7	21	71	10	62	41	18	6	32	1.78
57326465--57326517	21	2.6	21	76	5	65	37	13	43	5	1.67
57326873--57327152	43	6.5	43	89	0	425	31	22	21	25	1.98
57332721--57332825	27	3.9	27	78	2	113	41	33	10	14	1.80
57342160--57342280	39	3.1	39	93	0	197	14	17	34	33	1.90
57342188--57342260	23	3.5	22	66	24	59	12	19	34	34	1.89
57346075--57346102	14	2.0	14	100	0	56	42	21	7	28	1.79
57349225--57349258	17	2.0	17	100	0	68	41	0	0	58	0.98
57349224--57349308	27	3.2	27	78	6	84	42	0	2	55	1.12
57355756--57355814	26	2.3	26	84	0	82	37	15	8	38	1.78
57365404--57365511	44	2.4	44	87	3	144	29	23	13	33	1.93
57372792--57372899	44	2.4	44	87	3	144	29	23	13	33	1.93
57378903--57379017	40	2.9	39	81	7	117	37	16	19	26	1.93
57378953--57379037	40	2.1	40	80	4	91	40	17	21	21	1.92
57379061--57379293	41	5.7	41	77	3	191	23	18	26	31	1.97
57379590--57379623	14	2.4	14	90	0	50	14	0	35	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57379822--57380009	7	26.4	7	72	9	94	22	1	29	46	1.62
57379822--57380038	14	15.2	14	71	11	100	23	1	30	44	1.62
57379890--57379958	22	3.2	22	83	4	86	20	0	31	47	1.50
57379941--57380038	43	2.3	44	77	8	103	21	1	35	41	1.60
57379911--57380039	7	18.1	7	75	9	73	20	0	35	42	1.58
57380851--57380896	20	2.3	20	92	0	74	30	28	13	28	1.94
57380968--57380996	13	2.2	13	100	0	58	0	13	0	86	0.58
57380966--57380999	17	2.1	17	94	5	61	0	14	0	85	0.60
57389646--57389817	47	3.4	48	67	23	118	42	1	3	52	1.25
57389700--57389798	44	2.3	41	75	17	92	45	1	3	50	1.23
57389733--57389796	28	2.4	28	86	5	87	43	0	0	56	0.99
57389646--57389905	117	2.3	105	86	10	301	43	1	3	51	1.29
57389852--57389885	17	2.0	17	100	0	68	41	0	0	58	0.98
57389852--57389899	15	3.0	15	81	9	51	41	2	0	56	1.11
57390672--57390923	42	6.0	42	77	2	184	28	17	25	29	1.97
57392654--57392713	23	2.6	22	81	5	66	31	28	20	20	1.97
57392677--57392749	36	2.0	36	94	0	128	30	26	21	21	1.99
57392713--57392764	23	2.3	23	93	0	86	30	26	21	21	1.98
57400829--57400853	13	1.9	13	100	0	50	40	0	16	44	1.47
57415917--57415946	15	2.0	15	93	0	51	70	0	10	20	1.16
57416740--57417833	547	2.0	547	92	0	1814	25	14	23	35	1.93
57418083--57418125	18	2.3	19	80	8	52	62	0	4	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57418386--57418449	31	2.1	31	96	0	119	28	4	26	40	1.76
57423908--57424004	50	1.9	50	97	0	185	32	9	23	34	1.87
57438029--57438108	20	3.9	20	83	9	90	11	25	21	42	1.85
57438909--57438979	36	2.0	36	100	0	142	40	16	11	30	1.84
57440329--57440464	41	3.5	40	81	6	145	33	22	17	26	1.96
57441462--57441500	19	2.0	20	85	5	53	43	7	5	43	1.55
57442755--57442824	19	3.4	19	77	12	68	74	0	20	5	1.02
57443462--57443510	20	2.5	20	90	3	73	63	22	2	12	1.39
57453893--57454438	87	6.3	87	93	0	878	25	22	22	29	1.99
57460715--57460761	18	2.7	18	81	15	62	59	0	4	36	1.17
57463424--57463495	20	3.7	20	85	7	85	54	6	0	38	1.28
57466359--57466409	26	2.0	26	92	0	84	43	1	5	49	1.38
57469531--57469567	17	2.2	17	90	0	56	67	0	21	10	1.21
57473632--57473661	16	1.9	15	93	6	51	53	13	3	30	1.56
57490586--57490763	27	6.6	27	83	3	205	26	15	28	29	1.96
57490587--57490742	82	1.9	81	88	3	233	26	15	28	29	1.96
57490583--57490763	82	2.2	81	83	2	229	27	15	27	29	1.96
57492855--57492879	12	2.1	12	100	0	50	52	0	0	48	1.00
57493176--57493253	39	2.0	39	100	0	156	43	10	12	33	1.77
57501373--57501482	54	2.0	56	83	7	143	43	4	9	42	1.56
57501390--57501518	54	2.4	54	80	7	127	43	5	10	41	1.61
57505000--57505686	374	1.8	375	94	0	1216	39	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57509111--57509144	3	11.3	3	100	0	68	35	0	0	64	0.94
57520423--57520544	55	2.2	56	82	5	142	40	0	31	26	1.62
57521659--57521683	10	2.5	10	100	0	50	20	0	8	72	1.10
57523054--57523078	5	5.0	5	100	0	50	20	0	0	80	0.72
57527787--57527852	33	2.0	33	93	0	114	37	18	24	19	1.93
57531319--57531365	22	2.2	22	81	11	53	23	10	10	55	1.65
57532153--57532200	25	1.9	25	83	8	62	33	2	2	62	1.18
57538013--57538058	20	2.2	20	84	7	56	13	10	8	67	1.42
57538873--57538970	51	1.9	51	95	0	178	22	14	26	36	1.92
57539624--57539663	20	2.1	19	90	4	62	2	17	5	75	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187