genome.fa.s15.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  20  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5618396--5618499	40	2.7	38	80	5	120	48	8	5	37	1.58
5632685--5632875	51	3.8	50	75	12	192	31	27	16	25	1.96
5632686--5632871	101	1.8	99	84	7	241	31	26	16	25	1.96
5640373--5640484	41	2.7	41	84	0	143	21	25	24	29	1.99
5652952--5653081	50	2.6	50	83	2	154	26	25	30	17	1.97
5661172--5661288	24	4.9	24	87	0	126	30	21	22	25	1.98
5661379--5661492	42	2.7	42	88	0	156	38	19	11	30	1.87
5663864--5663939	23	3.3	23	84	0	107	31	21	21	26	1.98
5667402--5667542	32	4.5	32	87	1	160	39	21	18	20	1.93
5667586--5667649	27	2.4	27	85	12	80	31	23	25	20	1.98
5667714--5667771	24	2.4	24	85	0	71	44	24	8	22	1.80
5667728--5667776	24	2.0	24	92	0	80	42	24	8	24	1.81
5667822--5668074	27	9.4	27	84	3	269	20	15	20	43	1.88
5667822--5668167	81	4.3	81	81	4	324	20	15	20	42	1.88
5667889--5668153	27	9.8	26	80	9	173	20	16	21	41	1.90
5667889--5668307	54	7.8	53	78	9	268	19	15	21	43	1.88
5667982--5668307	27	12.1	27	77	8	183	18	15	21	44	1.87
5667888--5668304	81	5.2	79	78	8	308	18	15	22	43	1.88
5670527--5670574	25	1.9	25	87	8	71	58	4	4	33	1.36
5677198--5677253	28	2.0	28	100	0	112	35	10	14	39	1.81
5685398--5685434	18	2.1	18	100	0	74	21	32	18	27	1.97
5691201--5691396	109	1.8	108	82	3	250	35	18	18	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5690856--5691590	113	6.5	116	72	9	381	32	19	21	26	1.97
5691758--5691813	23	2.4	23	93	0	94	16	0	41	42	1.48
5691738--5691858	7	16.7	7	70	16	68	18	0	38	42	1.56
5691802--5691860	22	2.7	22	84	2	75	16	1	38	42	1.59
5691809--5691860	22	2.4	21	90	3	77	19	1	40	38	1.63
5691921--5691989	7	9.3	7	72	12	57	20	2	33	43	1.67
5691921--5691989	15	4.6	14	71	13	57	20	2	33	43	1.67
5692977--5693023	22	2.1	22	92	0	76	25	10	23	40	1.87
5693201--5693302	54	1.9	53	90	6	161	27	2	19	50	1.62
5693504--5693533	14	2.1	14	100	0	60	26	13	6	53	1.64
5694213--5694290	31	2.5	31	87	8	115	47	2	0	50	1.15
5694323--5694872	92	6.0	92	99	0	1084	40	6	4	48	1.49
5694323--5694872	275	2.0	276	99	0	1084	40	6	4	48	1.49
5694869--5695215	9	40.9	9	68	16	125	45	19	4	30	1.70
5695009--5695081	34	2.1	34	97	0	137	43	21	6	27	1.78
5695035--5695206	25	6.8	25	72	5	114	43	20	4	30	1.72
5695070--5695146	16	4.8	16	72	15	68	46	15	6	31	1.71
5700506--5700571	21	3.1	21	80	0	78	36	18	40	4	1.71
5700601--5700700	50	2.0	50	92	0	164	38	22	25	15	1.92
5701107--5702076	42	23.0	42	96	1	1746	27	19	19	34	1.96
5721119--5721195	26	2.8	26	81	12	84	64	1	0	33	1.01
5721118--5721212	37	2.6	37	80	11	90	62	1	0	36	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5721126--5721201	20	4.1	20	71	20	58	63	1	0	35	1.03
5721144--5721230	28	3.1	27	82	12	97	59	0	1	39	1.05
5721391--5721446	26	2.2	26	87	6	78	39	5	7	48	1.54
5721405--5721454	26	1.9	26	95	0	91	36	4	6	54	1.44
5721436--5721494	20	3.0	20	71	14	59	28	6	1	62	1.30
5721537--5721607	18	3.7	18	71	20	63	28	7	4	60	1.42
5721543--5721602	19	3.0	20	75	22	63	31	8	5	55	1.51
5722012--5722111	43	2.3	43	87	3	139	54	12	2	32	1.49
5725123--5725152	16	1.9	16	93	6	53	33	6	13	46	1.69
5730049--5730148	43	2.3	43	87	3	139	54	12	2	32	1.49
5733160--5733189	16	1.9	16	93	6	53	33	6	13	46	1.69
5738189--5738213	13	1.9	13	100	0	50	48	0	0	52	1.00
5738168--5738225	16	3.8	16	71	15	50	53	0	0	46	1.00
5738857--5738895	20	2.0	20	84	0	51	28	0	10	61	1.28
5739844--5739899	29	2.0	28	89	3	85	23	14	28	33	1.94
5740808--5740868	32	1.9	32	96	0	113	31	16	31	21	1.95
5746054--5746080	11	2.5	11	100	0	54	40	22	22	14	1.90
5747696--5747809	48	2.4	48	83	0	138	42	22	13	21	1.88
5750684--5750829	36	4.1	36	79	3	143	47	12	13	26	1.78
5750684--5750821	71	1.9	72	82	1	170	44	13	14	27	1.82
5756408--5756450	10	4.2	10	80	14	52	18	0	2	79	0.85
5763131--5763277	41	3.6	41	87	0	204	35	16	28	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5777624--5777673	23	2.2	21	80	13	55	4	14	8	74	1.20
5781861--5782411	47	11.6	47	91	3	809	28	29	8	33	1.87
5781861--5782411	143	3.9	141	88	4	809	28	29	8	33	1.87
5782271--5782393	22	5.3	22	63	18	70	26	30	9	33	1.89
5784022--5784046	13	1.9	13	100	0	50	36	16	16	32	1.90
5785600--5785677	39	2.0	39	97	0	147	24	14	23	38	1.91
5799574--5799689	62	1.9	61	84	5	155	53	3	4	38	1.38
5799665--5799729	20	3.5	19	78	12	64	55	4	1	38	1.30
5801387--5801418	15	2.1	15	100	0	64	68	6	6	18	1.32
5805567--5805596	12	2.5	12	94	0	51	6	30	40	23	1.80
5808839--5809481	319	2.0	320	95	0	1155	28	19	17	33	1.95
5820562--5820637	37	2.1	36	83	11	93	51	2	2	43	1.29
5823530--5823611	28	3.0	28	75	8	87	25	14	20	39	1.91
5824383--5824426	18	2.5	17	78	10	52	40	11	2	45	1.53
5827467--5827500	16	2.0	18	88	11	54	41	11	0	47	1.40
5836811--5836940	70	1.9	70	88	4	201	20	23	6	50	1.72
5839123--5839158	18	2.0	18	100	0	72	16	5	22	55	1.62
5842282--5842546	40	6.7	40	85	5	286	26	27	21	24	1.99
5842249--5842546	80	3.7	80	79	9	263	25	27	21	25	1.99
5842478--5842555	40	1.9	41	82	10	97	26	28	20	24	1.99
5850271--5850573	40	7.6	40	87	4	353	26	27	20	25	1.99
5861942--5861991	11	4.5	11	78	9	57	40	48	2	10	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5861941--5862013	22	3.3	21	74	11	58	34	49	4	12	1.59
5876398--5876475	40	1.9	41	86	5	113	34	10	2	52	1.49
5882109--5882153	23	2.0	23	82	8	56	42	4	24	28	1.74
5885892--5885921	12	2.5	12	94	0	51	23	40	30	6	1.80
5889224--5889408	40	4.7	40	79	5	160	27	28	20	24	1.99
5894507--5894590	30	2.8	30	81	0	105	19	28	29	22	1.98
5909396--5909437	20	2.2	19	83	12	50	16	14	4	64	1.45
5910078--5910221	25	5.8	25	80	3	121	25	25	24	25	2.00
5910082--5910214	50	2.7	50	82	2	151	26	26	23	24	2.00
5914671--5914715	22	2.0	22	87	8	65	40	15	2	42	1.59
5914671--5914713	12	3.8	11	81	12	52	37	16	2	44	1.60
5919434--5919460	13	2.1	13	100	0	54	29	14	7	48	1.71
5921714--5921753	21	2.0	20	85	5	53	7	30	7	55	1.56
5924689--5924762	20	3.2	20	68	31	58	64	10	2	21	1.37
5924673--5924777	50	2.1	50	98	0	201	61	11	4	21	1.47
5924934--5924976	5	8.2	5	80	10	50	72	0	2	25	0.97
5924929--5924976	10	4.7	10	85	12	62	70	0	2	27	0.98
5926009--5926056	21	2.1	21	85	11	60	72	2	4	20	1.11
5926819--5926914	46	2.1	46	94	0	165	22	16	22	37	1.94
5928745--5928787	20	2.2	20	83	8	52	76	0	0	23	0.78
5930256--5930308	21	2.5	21	76	14	56	50	3	0	45	1.19
5930415--5930495	10	8.4	9	76	10	54	35	3	1	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5930844--5930873	15	2.0	15	100	0	60	53	20	0	26	1.46
5931018--5931083	34	2.0	34	93	3	116	51	9	16	22	1.72
5940484--5940508	5	5.0	5	100	0	50	80	0	0	20	0.72
5947212--5947266	27	2.1	26	86	10	76	45	0	0	54	0.99
5948193--5948228	18	1.9	19	88	5	56	75	2	16	5	1.12
5951051--5951126	38	2.1	35	83	11	91	65	9	2	22	1.34
5951867--5951915	12	4.5	11	78	21	59	34	0	0	65	0.93
5951871--5951922	20	2.6	20	84	6	70	34	0	0	65	0.93
5954310--5954371	20	3.1	20	80	0	70	37	8	8	46	1.63
5959247--5959317	34	2.1	34	81	5	81	39	0	4	56	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187