genome.fa.s15.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  106  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31097097--31097124	12	2.3	12	100	0	56	28	0	17	53	1.44
31098698--31098731	11	3.2	11	83	8	52	14	26	5	52	1.64
31099151--31099268	33	3.5	33	80	2	128	38	33	8	18	1.81
31104851--31104884	5	6.6	5	86	6	50	61	0	0	38	0.96
31105521--31105568	19	2.6	18	87	12	62	22	31	4	41	1.73
31106926--31106976	27	1.9	27	84	4	68	50	17	1	29	1.57
31110386--31110438	18	3.0	17	72	8	52	32	28	3	35	1.75
31118112--31118144	17	2.1	17	88	11	52	54	24	9	12	1.66
31119918--31119965	25	2.0	25	88	12	73	43	0	2	54	1.12
31123899--31124232	45	7.6	45	75	13	243	26	23	20	29	1.99
31123938--31124358	44	9.7	43	70	13	159	26	23	21	28	1.99
31123931--31124375	217	2.0	218	89	2	680	25	24	20	29	1.99
31124637--31125841	88	13.7	88	97	0	2232	23	23	25	27	2.00
31127169--31127201	14	2.3	15	89	5	50	27	33	12	27	1.92
31130968--31131024	29	1.9	30	82	10	73	52	7	14	26	1.66
31132082--31132271	95	2.0	95	98	0	371	51	10	20	18	1.74
31132411--31132458	22	2.2	22	85	7	62	33	16	6	43	1.73
31132747--31132841	44	2.1	45	86	1	129	27	23	18	30	1.98
31132991--31133482	169	2.9	167	83	3	617	27	27	17	28	1.97
31133715--31133850	45	3.0	46	78	4	159	29	23	18	28	1.98
31135126--31135156	6	5.2	6	100	0	62	16	16	0	67	1.23
31138581--31138607	8	3.4	8	100	0	54	25	11	11	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31139164--31139208	23	2.0	23	90	0	72	57	4	6	31	1.44
31139321--31139556	24	10.0	24	70	9	139	54	5	6	33	1.48
31139306--31139551	70	3.5	68	78	8	201	54	4	6	34	1.47
31143154--31143204	21	2.7	18	75	18	50	68	0	0	31	0.90
31144761--31144846	25	3.5	25	77	13	106	45	5	5	43	1.52
31144783--31144867	24	3.5	24	74	13	84	48	8	4	38	1.54
31144757--31144858	50	2.0	50	98	0	195	46	7	5	40	1.57
31145380--31145451	36	2.0	36	84	10	94	38	4	4	52	1.40
31146653--31146742	32	2.8	32	96	0	162	54	16	3	25	1.57
31146650--31146755	32	3.5	30	89	6	128	52	17	2	26	1.58
31146715--31146769	27	2.0	27	86	6	76	50	18	3	27	1.63
31146648--31146787	59	2.3	62	80	8	162	52	17	2	26	1.58
31149903--31149955	17	3.4	17	72	20	60	54	18	11	15	1.70
31149898--31149956	30	2.0	30	93	0	100	54	18	11	15	1.71
31150502--31150637	8	15.6	8	68	19	69	66	4	2	25	1.24
31150470--31150603	56	2.4	56	78	9	157	64	4	2	27	1.27
31150556--31150616	19	3.6	17	75	20	56	70	3	0	26	1.02
31150575--31150635	30	2.0	32	83	6	81	67	3	0	29	1.07
31158702--31158785	20	4.4	19	73	23	70	33	5	1	59	1.29
31158707--31158756	16	2.8	17	85	11	57	36	8	0	56	1.29
31160490--31160526	18	2.1	18	89	0	56	54	0	24	21	1.45
31179401--31179425	13	1.9	13	100	0	50	28	8	8	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31183965--31184014	25	2.0	25	100	0	100	40	8	16	36	1.77
31186717--31186755	21	1.9	20	89	5	60	28	20	25	25	1.99
31187572--31187653	28	2.8	30	79	3	96	47	17	12	23	1.80
31190363--31190392	15	1.9	16	93	6	53	46	0	0	53	1.00
31191976--31192001	3	8.7	3	100	0	52	65	0	34	0	0.93
31199587--31199650	33	1.9	33	83	0	83	28	26	25	20	1.99
31200004--31200219	27	8.1	27	81	11	250	24	13	18	44	1.85
31200425--31200467	19	2.4	17	80	7	50	18	41	23	16	1.89
31203020--31203082	25	2.5	25	84	5	74	31	17	14	36	1.90
31203425--31203463	18	2.1	19	86	13	55	30	10	2	56	1.46
31208845--31208904	30	2.0	30	93	0	102	43	15	20	21	1.88
31210255--31210286	16	2.0	16	93	0	55	40	6	15	37	1.73
31214288--31214396	42	2.6	43	83	2	141	24	18	23	33	1.97
31214249--31214404	42	3.7	42	77	8	138	25	17	25	32	1.97
31217913--31217999	44	2.0	44	90	4	140	25	13	19	41	1.88
31221175--31221199	13	1.9	13	100	0	50	32	4	24	40	1.73
31222306--31222408	42	2.4	43	81	1	118	30	14	21	33	1.93
31222265--31222428	43	3.8	42	77	7	152	26	14	25	33	1.94
31225588--31225629	21	2.0	21	85	0	57	35	23	9	30	1.87
31229399--31229571	27	6.4	27	86	0	211	20	16	20	42	1.89
31232880--31233050	27	6.4	27	89	2	256	17	16	21	43	1.87
31232880--31233050	53	3.2	53	92	1	288	17	16	21	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31238573--31238715	41	3.5	40	86	5	198	24	18	24	32	1.97
31239753--31239798	23	2.0	22	87	4	65	36	4	4	54	1.40
31241782--31241861	41	2.0	40	90	7	126	20	18	8	52	1.71
31241918--31242054	70	2.0	70	86	2	195	29	20	24	26	1.99
31245051--31245128	37	2.1	36	88	6	113	19	11	32	37	1.87
31248792--31248860	36	1.9	36	96	0	129	26	10	23	40	1.86
31257224--31257248	6	4.2	6	100	0	50	32	0	68	0	0.90
31259101--31259135	18	1.9	18	88	11	54	54	34	2	8	1.46
31268706--31268818	44	2.6	43	81	8	120	38	0	31	30	1.58
31268750--31268818	23	3.3	19	73	21	57	36	0	31	31	1.58
31270415--31270456	20	2.1	20	95	0	75	47	0	7	45	1.30
31270483--31270534	3	17.0	3	76	11	52	30	5	1	61	1.30
31274726--31274804	37	2.1	37	88	4	115	25	30	18	25	1.98
31274923--31275208	47	6.1	47	92	0	464	27	30	9	32	1.88
31283335--31283636	139	2.2	141	85	1	410	28	27	17	26	1.98
31288031--31288069	20	2.1	19	85	9	53	61	0	12	25	1.31
31290088--31290168	41	2.0	41	97	0	153	16	22	28	33	1.95
31290694--31290748	27	2.0	27	100	0	110	40	14	14	30	1.86
31292561--31292735	45	3.9	45	87	3	235	18	22	22	36	1.95
31293463--31293558	50	2.0	48	86	8	133	44	12	14	28	1.81
31295427--31295619	94	2.1	94	98	0	377	40	17	18	23	1.91
31300840--31300899	24	2.4	23	86	10	75	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31301536--31301577	11	3.4	12	81	15	50	38	2	0	59	1.10
31301719--31301757	14	2.8	14	88	0	60	46	5	12	35	1.65
31302200--31302238	19	2.1	19	85	0	51	51	0	2	46	1.14
31302273--31302309	16	2.3	16	86	13	58	40	0	0	59	0.97
31302321--31302373	22	2.5	21	84	6	63	54	0	0	45	0.99
31320291--31320485	106	1.8	106	85	2	275	38	18	17	25	1.92
31323157--31323267	19	5.8	19	90	0	168	37	12	9	40	1.75
31323157--31323260	38	2.7	38	96	0	190	38	11	8	41	1.72
31327492--31327522	11	2.8	11	95	0	53	41	0	19	38	1.51
31330872--31330904	16	2.1	16	88	11	50	30	18	3	48	1.63
31337438--31337562	43	2.9	43	80	5	146	30	26	15	28	1.96
31344807--31344853	24	2.0	24	87	8	69	27	4	10	57	1.51
31345049--31345661	87	7.1	87	89	2	959	31	23	21	23	1.98
31345985--31346498	257	2.0	258	96	0	940	32	34	20	12	1.89
31346697--31347069	186	2.0	185	97	0	710	26	17	27	28	1.98
31347127--31347385	130	2.0	130	98	0	500	21	29	24	24	1.99
31360254--31360796	87	6.2	87	96	0	924	31	23	21	23	1.98
31360254--31361529	174	7.5	174	89	3	1991	31	23	21	23	1.98
31360254--31361529	261	5.0	260	89	4	1973	31	23	21	23	1.98
31360724--31360868	72	2.0	72	100	0	290	33	23	16	26	1.96
31360800--31361529	87	8.5	87	90	1	1157	31	23	21	23	1.98
31365426--31365470	22	2.1	21	83	4	54	35	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31367699--31367806	44	2.4	44	87	3	144	29	23	13	33	1.93
31368131--31368162	4	8.0	4	100	0	64	0	25	0	75	0.81
31368212--31368258	15	2.9	16	84	9	60	4	17	2	76	1.04
31368222--31368263	20	2.0	21	90	4	68	2	14	2	80	0.90
31368267--31368339	5	14.6	5	76	20	64	56	4	0	39	1.19
31368268--31368310	19	2.3	19	92	8	70	58	0	0	41	0.98
31368274--31368338	24	2.6	25	80	9	71	58	4	0	36	1.19
31370889--31370927	20	2.0	20	89	0	60	38	5	2	53	1.37
31371943--31372004	17	3.6	17	72	12	63	45	17	0	37	1.49
31371937--31372006	35	2.0	35	100	0	140	42	17	0	40	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187