genome.fa.s15.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  81  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23698704--23698908	39	5.3	39	87	0	293	32	14	20	33	1.92
23701413--23701540	13	9.7	13	73	5	105	35	18	2	42	1.63
23701410--23701528	40	3.0	39	86	7	152	36	17	2	43	1.63
23701381--23701540	26	6.2	26	74	7	128	37	17	2	42	1.63
23701413--23701549	40	3.4	39	83	4	123	35	18	2	43	1.63
23701554--23701825	135	2.0	135	95	0	490	36	18	4	41	1.70
23709896--23709929	2	17.0	2	100	0	68	0	50	0	50	1.00
23719547--23719589	22	2.0	22	100	0	86	18	16	23	41	1.89
23723469--23723502	17	1.9	18	88	5	52	55	5	0	38	1.24
23725124--23725151	7	4.0	7	100	0	56	42	0	28	28	1.56
23726458--23726544	43	2.0	43	100	0	174	43	20	17	18	1.88
23726738--23726783	11	4.2	11	100	0	92	30	26	0	43	1.55
23734101--23734223	61	2.1	57	80	8	131	52	7	8	30	1.60
23749216--23749324	17	5.8	17	73	15	65	64	2	2	30	1.22
23749216--23749295	9	8.6	9	71	17	56	65	2	1	31	1.14
23749276--23749371	27	3.4	27	76	11	95	62	4	6	27	1.38
23749276--23749371	28	3.4	28	76	13	99	62	4	6	27	1.38
23749218--23749343	28	4.5	28	74	11	80	65	3	3	26	1.25
23749219--23749379	19	8.6	18	68	18	53	63	3	4	28	1.31
23749417--23749534	17	6.9	16	69	18	62	66	0	5	27	1.17
23749417--23749535	8	14.0	8	71	20	73	67	0	5	26	1.17
23749455--23749552	20	5.6	17	71	20	60	67	2	4	26	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23749623--23749665	20	2.2	20	86	0	59	65	0	0	34	0.93
23749601--23749654	29	2.0	27	85	10	74	59	0	0	40	0.98
23750025--23750076	22	2.4	22	81	9	63	34	1	1	61	1.18
23750120--23750192	19	3.8	19	77	14	62	41	0	2	56	1.14
23750127--23750190	28	2.3	28	75	5	67	42	0	1	56	1.09
23750299--23750346	19	2.8	16	84	15	60	22	6	4	66	1.32
23753053--23753081	10	2.7	11	94	5	51	17	0	0	82	0.66
23766328--23766388	21	2.9	20	80	9	68	19	29	3	47	1.65
23770130--23770166	18	2.0	19	89	5	58	13	8	5	72	1.24
23771613--23771646	16	2.1	16	88	0	50	64	11	0	23	1.26
23774878--23774946	31	2.2	31	92	0	111	42	10	14	33	1.79
23777778--23777837	29	2.0	30	87	9	88	53	6	6	33	1.53
23778071--23778111	20	2.0	20	86	9	57	68	0	9	21	1.18
23786077--23786145	33	2.1	33	94	0	120	34	39	8	17	1.80
23788567--23788598	7	4.6	7	96	0	55	75	15	0	9	1.05
23789309--23789352	23	2.0	22	95	4	79	15	9	4	70	1.30
23790962--23791034	26	2.8	26	87	4	76	32	19	8	39	1.81
23794443--23794493	14	3.8	13	79	10	50	11	3	3	80	0.98
23800841--23800886	24	1.9	24	86	0	65	39	13	17	30	1.87
23801210--23801948	50	14.9	50	66	4	321	30	21	23	25	1.99
23801201--23801948	100	7.5	100	84	2	905	30	21	23	25	1.99
23801969--23802201	40	5.8	40	87	4	324	28	24	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23801967--23802203	82	2.9	80	86	6	325	28	24	21	25	1.99
23807521--23807558	11	3.5	11	82	3	51	36	0	0	63	0.95
23835825--23835858	10	3.4	10	91	0	50	8	41	29	20	1.82
23836521--23836641	58	2.1	59	89	4	183	32	23	20	23	1.98
23837037--23837088	24	2.2	24	96	0	95	11	42	32	13	1.80
23837324--23837692	85	4.4	85	83	2	456	15	34	33	16	1.91
23837302--23837692	42	9.2	43	81	3	434	16	34	32	16	1.91
23837277--23837692	127	3.3	127	81	4	471	15	34	32	17	1.92
23837842--23838603	85	9.0	86	81	5	822	16	32	33	17	1.92
23837842--23838603	42	18.0	43	83	4	822	16	32	33	17	1.92
23838626--23838860	43	5.5	43	85	4	253	14	30	36	19	1.91
23838626--23838864	85	2.8	86	80	6	263	14	30	35	19	1.92
23838624--23838896	128	2.1	129	83	4	338	13	29	38	18	1.90
23838624--23838896	43	6.4	43	80	8	220	13	29	38	18	1.90
23841133--23841181	20	2.5	20	93	0	80	20	30	34	14	1.92
23843050--23843566	259	2.0	259	93	0	874	21	27	35	14	1.93
23844406--23845250	43	19.5	42	68	14	330	16	30	33	19	1.93
23844406--23844700	85	3.5	84	85	2	369	14	31	34	20	1.92
23844548--23844793	128	1.9	128	94	0	438	16	30	32	20	1.95
23844794--23845250	85	5.4	85	81	3	526	16	30	34	18	1.93
23844569--23844997	228	1.9	228	83	5	555	15	31	32	20	1.94
23844481--23845058	313	1.8	313	92	1	980	16	30	33	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23844819--23845249	128	3.4	128	74	9	403	16	30	34	18	1.93
23846765--23846983	114	1.9	115	79	12	245	20	8	19	52	1.72
23862591--23862852	93	2.8	90	77	12	269	30	18	19	32	1.96
23863015--23863046	15	2.1	15	94	0	55	21	6	34	37	1.79
23865063--23865872	6	135.0	6	100	0	1620	33	0	0	66	0.92
23874184--23874209	13	2.0	13	100	0	52	30	0	15	53	1.42
23874853--23874924	20	3.8	20	77	14	80	43	2	1	52	1.24
23874910--23875026	62	1.9	59	86	8	164	43	2	3	50	1.32
23879495--23879622	9	13.9	9	68	16	50	32	7	3	57	1.42
23884085--23884165	29	2.8	29	74	18	80	23	16	3	56	1.55
23884454--23884487	16	2.1	16	88	0	50	41	2	11	44	1.56
23886831--23886873	22	2.0	22	95	0	77	44	11	4	39	1.62
23888456--23888504	5	9.0	5	79	16	53	20	2	4	73	1.10
23889268--23889466	109	1.8	109	81	4	249	27	24	19	29	1.98
23889743--23889790	16	3.0	15	76	11	51	83	4	8	4	0.90
23901791--23901831	18	2.4	18	88	11	61	60	4	0	34	1.18
23902341--23902408	31	2.2	31	86	5	93	47	2	2	47	1.32
23902357--23902537	93	1.9	93	85	2	247	44	4	6	45	1.48
23908605--23909116	254	2.0	253	89	1	792	32	15	16	34	1.91
23909339--23909405	34	1.9	34	85	8	91	58	13	7	20	1.59
23909475--23909514	21	1.9	21	85	10	55	70	5	5	20	1.26
23914531--23914615	31	2.8	29	77	18	84	34	9	14	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23917156--23917206	15	3.5	14	72	17	50	66	0	1	31	1.03
23917136--23917228	29	3.0	31	82	7	118	61	0	1	37	1.03
23917191--23917256	11	6.4	11	70	19	52	60	0	3	36	1.12
23917161--23917271	40	2.7	40	80	8	127	63	0	2	33	1.08
23918953--23918997	20	2.2	20	84	7	56	64	11	0	24	1.26
23920033--23920077	19	2.2	21	84	11	58	48	4	2	44	1.35
23921872--23921914	18	2.4	18	80	7	52	51	0	2	46	1.13
23925002--23925036	17	2.1	17	88	0	52	65	2	5	25	1.28
23930838--23930880	13	3.3	12	81	15	50	37	0	2	60	1.10
23930841--23930870	14	2.1	14	100	0	60	46	0	0	53	1.00
23934117--23934184	16	4.2	16	94	0	118	25	0	33	41	1.56
23934408--23934454	16	2.8	18	78	21	57	55	0	0	44	0.99
23934307--23934622	156	2.0	157	94	0	553	44	3	5	46	1.43
23934556--23934597	15	2.7	16	82	14	52	52	2	0	45	1.13
23934565--23934606	15	2.9	15	82	10	52	52	0	0	47	1.00
23934772--23934819	26	1.9	25	84	16	64	52	2	0	45	1.12
23934727--23934955	92	2.5	92	83	8	236	47	3	3	44	1.38
23937502--23937546	20	2.2	20	80	0	54	17	17	44	20	1.87
23939116--23939225	33	3.3	33	81	11	136	31	8	17	42	1.78
23939172--23939376	51	4.0	51	97	1	385	28	7	18	45	1.75
23939451--23939717	86	3.1	86	99	0	527	47	7	4	40	1.53
23950286--23950329	17	2.4	18	88	7	63	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23950403--23950451	25	2.0	24	92	4	80	61	2	0	36	1.08
23950410--23950449	19	2.0	20	86	13	57	62	2	0	35	1.09
23950777--23950819	10	4.0	10	77	16	50	46	0	0	53	1.00
23950772--23950810	18	2.2	18	90	9	62	46	0	0	53	1.00
23950909--23950994	29	3.1	29	66	20	83	46	2	2	48	1.27
23950916--23951005	26	3.3	26	73	8	90	46	4	2	46	1.35
23950879--23951003	55	2.2	56	87	4	171	46	3	3	47	1.34
23951551--23951601	22	2.3	22	82	0	57	7	13	13	64	1.48
23954932--23954981	21	2.4	21	80	3	57	44	0	14	42	1.44
23957122--23957178	18	3.0	18	76	14	69	29	24	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187