genome.fa.s15.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  16  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4290251--4290405	36	4.0	36	79	15	184	36	14	20	28	1.92
4290206--4290540	82	4.0	81	86	7	442	34	15	22	28	1.94
4290287--4290540	46	5.8	45	84	10	332	33	15	22	28	1.95
4290170--4290540	128	2.9	125	77	16	411	34	14	22	28	1.93
4291641--4291675	18	2.0	18	88	5	54	54	20	14	11	1.70
4303969--4304011	19	2.4	17	80	7	50	20	0	4	74	1.00
4306764--4306991	40	5.7	40	93	0	384	30	20	27	21	1.98
4314699--4314846	40	3.7	41	87	3	167	23	21	28	26	1.99
4314703--4314853	80	1.9	79	82	5	187	23	21	29	25	1.99
4318833--4318956	61	2.0	62	95	1	223	22	16	16	45	1.85
4322643--4322672	15	1.9	16	93	6	53	16	23	26	33	1.96
4324342--4324375	10	3.3	10	91	4	50	52	8	0	38	1.33
4324776--4324814	16	2.4	16	100	0	78	25	17	10	46	1.80
4326437--4326494	30	1.9	30	82	6	73	24	31	29	15	1.95
4331239--4331265	6	4.5	6	100	0	54	14	0	0	85	0.61
4337207--4337409	41	5.0	41	89	3	268	21	25	21	32	1.98
4345850--4346058	44	4.9	42	76	15	196	25	18	24	30	1.98
4352692--4352780	45	2.0	45	100	0	178	28	8	26	35	1.87
4353612--4353659	16	3.1	16	69	6	53	43	14	2	39	1.57
4353599--4353659	31	2.0	31	100	0	122	42	14	3	39	1.62
4353599--4353649	15	3.3	15	72	5	57	43	17	3	35	1.68
4357097--4357134	20	1.9	20	100	0	76	15	63	15	5	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4357344--4357426	37	2.2	37	91	4	132	38	33	6	21	1.78
4357670--4357710	21	2.0	21	90	0	64	41	17	7	34	1.77
4357676--4357719	21	2.1	21	86	0	61	45	13	4	36	1.64
4362361--4362468	26	4.2	26	91	0	180	33	7	24	35	1.83
4365822--4365860	21	1.9	20	89	5	60	58	7	5	28	1.47
4366021--4366090	14	5.5	13	69	24	51	64	1	1	32	1.11
4365998--4366109	37	3.0	36	83	6	134	58	3	4	33	1.36
4366024--4366090	25	2.6	24	80	15	73	64	1	1	32	1.12
4366157--4366201	22	2.2	20	88	8	63	64	6	2	26	1.30
4366162--4366335	3	58.0	3	67	14	58	58	3	6	31	1.41
4366295--4366344	21	2.4	21	83	3	57	60	2	2	36	1.20
4366851--4366875	13	1.9	13	100	0	50	12	56	32	0	1.36
4368349--4368509	46	3.5	45	80	11	175	26	21	30	22	1.99
4374839--4374893	25	2.2	26	96	3	103	36	25	7	30	1.83
4375582--4375664	34	2.4	35	84	8	98	37	6	14	42	1.70
4378520--4378829	46	6.9	46	86	7	415	22	23	14	39	1.91
4378520--4378829	91	3.5	91	88	4	420	22	23	14	39	1.91
4378520--4378829	137	2.3	130	87	6	417	22	23	14	39	1.91
4378744--4378817	38	1.9	38	100	0	148	22	25	18	32	1.97
4380956--4381003	11	4.2	11	79	10	51	62	2	0	35	1.07
4381934--4381995	22	2.9	22	83	11	67	48	22	0	29	1.51
4382433--4382532	42	2.4	42	85	6	139	22	1	34	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4382509--4382582	7	10.4	7	77	8	62	17	1	36	44	1.57
4382516--4382575	21	2.8	22	80	7	79	18	1	35	45	1.60
4382470--4382593	49	2.5	48	87	7	169	16	1	35	45	1.58
4382886--4383113	84	2.7	84	85	3	273	31	16	22	29	1.96
4382913--4383113	84	2.4	84	88	0	303	33	16	21	27	1.95
4383473--4383505	16	2.1	16	94	0	57	15	12	15	57	1.65
4385463--4385569	50	2.1	51	82	5	128	36	10	6	46	1.64
4385989--4386031	3	14.0	3	95	4	77	0	0	32	67	0.91
4386456--4386485	13	2.3	13	100	0	60	53	10	0	36	1.35
4386487--4386551	9	7.2	9	75	6	60	44	20	3	32	1.67
4391697--4391725	14	2.1	14	93	6	51	34	0	6	58	1.25
4392426--4392507	31	2.5	33	78	7	96	14	4	19	60	1.51
4394572--4394607	15	2.5	14	86	8	54	33	16	11	38	1.84
4397780--4397856	9	7.8	10	75	16	54	31	1	1	66	1.08
4397791--4397844	20	2.7	19	75	16	56	29	1	1	66	1.12
4398369--4398417	25	1.9	26	87	4	73	75	20	2	2	1.00
4399574--4399618	21	2.1	21	100	0	90	40	28	11	20	1.86
4405746--4406789	132	7.9	132	93	0	1674	28	18	25	28	1.98
4406032--4406482	45	10.2	45	65	11	153	28	17	25	27	1.98
4407158--4407205	24	2.0	25	87	4	71	75	20	2	2	1.02
4409656--4410109	131	3.5	131	89	1	626	29	19	17	33	1.95
4422178--4422437	130	2.0	129	94	0	457	31	10	19	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4425991--4426039	21	2.5	19	86	6	62	36	6	0	57	1.24
4425991--4426041	19	2.5	21	84	6	70	37	7	0	54	1.29
4429575--4429601	5	5.4	5	100	0	54	59	0	0	40	0.98
4431201--4431504	151	2.0	150	96	1	556	37	17	7	36	1.79
4438383--4438426	2	22.0	2	100	0	88	50	0	50	0	1.00
4442920--4442958	15	2.6	15	79	0	51	7	25	2	64	1.33
4462419--4462484	15	4.4	14	74	11	51	7	19	1	71	1.18
4468556--4468617	30	2.1	30	82	11	74	59	0	19	20	1.38
4475232--4475286	19	2.8	19	74	15	58	63	3	0	32	1.12
4478960--4478985	11	2.4	11	100	0	52	15	7	7	69	1.35
4480898--4480930	18	1.9	17	88	11	50	48	0	21	30	1.50
4483016--4483200	40	4.7	40	80	4	178	24	22	27	25	2.00
4491008--4491231	79	2.8	80	85	4	294	24	22	28	25	2.00
4491008--4491231	40	5.7	40	87	3	294	24	22	28	25	2.00
4493352--4493395	22	1.9	24	86	9	65	45	2	11	40	1.53
4498693--4498745	17	3.4	17	65	20	51	58	9	5	26	1.52
4498693--4498753	30	2.0	30	100	0	122	54	9	6	29	1.59
4500422--4500474	24	2.2	25	93	3	90	26	28	16	28	1.97
4510573--4510835	40	6.6	40	87	3	309	26	28	20	23	1.99
4517236--4517269	16	2.1	16	88	0	50	38	2	20	38	1.68
4522901--4522934	18	1.9	18	94	5	61	11	32	44	11	1.77
4526924--4526966	11	3.9	11	81	0	50	79	2	11	6	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4526922--4526967	22	2.1	22	87	0	65	76	2	15	6	1.09
4527355--4527657	42	7.3	42	86	4	389	35	24	18	21	1.95
4528060--4528136	7	10.4	8	78	16	51	0	12	5	81	0.84
4528061--4528145	20	4.3	19	75	21	68	0	11	4	83	0.79
4528075--4528144	14	4.8	14	80	16	63	0	10	5	84	0.78
4531877--4531928	19	2.7	18	77	11	59	42	11	3	42	1.59
4532265--4532308	3	14.7	3	100	0	88	0	0	31	68	0.90
4532408--4532450	22	1.9	23	85	4	61	60	2	4	32	1.30
4540089--4540199	32	3.7	30	73	16	95	52	2	3	41	1.33
4540129--4540174	19	2.2	21	85	11	60	54	2	0	43	1.12
4540091--4540217	58	2.2	58	88	2	184	51	3	3	41	1.33
4540505--4540547	20	2.2	20	91	4	70	9	16	25	48	1.75
4543642--4543734	46	2.0	46	89	0	141	22	5	11	60	1.52
4545154--4545248	46	2.1	46	84	4	120	25	6	8	60	1.50
4554697--4554745	16	3.1	16	75	18	50	57	0	2	40	1.10
4555056--4555108	24	2.2	24	83	6	63	37	7	11	43	1.69
4558510--4558594	43	2.0	43	83	0	107	25	12	25	35	1.92
4558917--4558970	19	2.8	19	88	0	90	37	11	16	35	1.84
4558917--4558993	19	3.7	22	76	13	67	36	9	16	37	1.81
4564852--4565113	39	6.7	40	87	7	337	25	22	27	24	2.00
4575522--4575573	24	2.2	24	89	0	77	38	1	5	53	1.36
4575539--4575585	24	2.0	24	87	8	69	40	4	10	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4575782--4575831	24	2.1	24	92	0	82	50	6	4	40	1.46
4575793--4575835	12	3.6	12	75	12	52	51	2	4	41	1.35
4576209--4576267	27	2.2	27	84	6	75	42	1	1	54	1.20
4576474--4576504	15	2.1	15	93	0	53	58	6	0	35	1.24
4576639--4576679	21	1.9	21	90	5	64	39	4	9	46	1.58
4579874--4580218	129	2.7	129	82	2	406	38	12	16	31	1.86
4581692--4581728	18	2.1	18	89	0	56	29	10	10	48	1.72
4588601--4588722	23	5.3	23	82	3	156	22	18	25	33	1.97
4588601--4588722	46	2.7	46	89	0	181	22	18	25	33	1.97
4592377--4592436	30	2.0	30	100	0	120	30	43	0	26	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187